Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003067

Physical Location & Seq

Genomic Coordinates Reverse (-)

5949037 .. 5954316

Gene Structure 5280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3552 bp

ATGGCCACCGTCGACGACCACCACCTCCTCCACCTGGACTCCGTCCCCGTTGTCGACCTCCGCCTCCTCACCCAATCCGAGCTCTACTCCCTCTCCCTCTCCTCCTCCTCCTCCTCCGCATCTCACCGCTTCGACGACGACGTTTTGATCCCCAAAATCGACCGCTCCGTCTTCAACGAATCCGCCGGCAGCCGCAAACAGACCTACTCCCGCCTCCGCCTCGCCCCTCGCAACTCCCAATTCGCCTCCTCCTCCAATTCCAAATCTGCCCTCCCTCCCTCCCACCTCCTCCTCTCCCAGCCGCTCGATCGCGAGAGCCGCCAGATTATCTCGCTCCTCAAGCAGCTCTTCCCCTCCGACGATCAAAACGACGACGTCCTCCTCCCCCAAACCACCACCACCACCCCCACCCCCCCGCAGTACAAAATCCCCGCCGCGCCGGCGCCTTCTCTCAGCGCCTCGGCCGCTGCGGTTTCCGGTGGTGTCGATTCCTCGCTCGGGAAGCGGAAGCGCGGCCGGCCGCGGAAGGATTCCAACGCTGTGATTGCGAAACCGGAGGCGGCTGCGCCGGTCGGCTCTGCTGCGTTGGCTGGCGGTGCCCGCGAGGCTGAGGATGGCAATGCCGGTGTTTTGATTGAGAAGCGTGACGGTGGAGCTACGGCGGTTGGGACTTTTGTGCTGAATAGCGAAGGACAGCTTGTGCCGAGTAGCGAGGGGAAGAGGAAGCGAGGGCGGCCGCGGAAGGATGAGATTAGGGTTAGGGATGAGAGTACAGTGGCGGCTTCGGTGAGGAAACCGCCAAGAGTGAAGAAGGAGGTGAAGGAGGAGGATGGAGAGATGGTGATGGTGAACGTGAACGACGTCGTTGTGGATTTGGAAGCATTGGCCACTGCGGACAGTGTGTTTGTGGAGGAGTTGAGGAAGAGGACAGAGGGGTTGGAGACTGAGGCGAAGTTGTTAGGGTTTCTGGAAGGGTTGGAGGGGGACTGGTCAAGTGCTAGGAAGAAGAGGAAGATTGTGCAGGCGAGTGAGCTCGGAGACTTGTTGCCGAAGTGGTGGAAGATCATGCTGTCTCTCAAGAGGAATGGAGGTCATAAATGGCTTGTGTGTAGGCGGTTTATAAGCCCTAATGGGTTGGAGTTTGTGTCGTGCAAGGAAGTTTCTTCATACTTGCACTCTTATTTTGGACTTGGAAGCCAGTCGATTTCTGTTCATACCGATGGGAATATTCAGATTTCTAATAAAATGGTTTTGGGAGATGGAATGCAACATGATACTAATTTTACCTATAAAGATAACAACAATGGTCATGAGCTTCTTCGCTGCTCCCCAATGCCCATTACCTCTATGAACAGCTATGTCAAGAGCATTGAAGCATCAGGAGAAGTAATGGGTATGCGAAAAAAATTGGATCCTGTAAAGAATGGTCGTCTGGGGACATCCTTGAAAATTCAAGAACCAGTTGAGATAGATGGGGAACAAACTTCTGATATGATAGCCAACTATGATTTGAGTTCTGATTTCTCTCTGGGTAAGGTAAATGATATCATGGCAAAATATTTTGGCATATCCAATGATGAATCGAATTCAATGTCCTGTGAGGAGCAAGCAATGATGGCTGACAAAACAATTTGCTTTTCTGATGCATTAAATGATGGTGTCAGGGTTGCCATCAGCTCAGTTGATGTGCCCAAAGTGGAGATAGACAGTGCTTCAAATGACATGGGAAAAGAACATGGAGCTGACAATATTGATAATCACCAATCAACTAGCACTGTAGATATGAAAATTGATGATGTGGATAATTGTAGGAATGGCAGGTCAATATCTGGTATTAGTGAGAGTCACATTGGACCTGAGACTGCATATAATGTTGACCAACAAAGTACTTCAGAAGCCTGCTCGCTTGTTCCTTCAATTGTGATGGAGTCTCTTCATGAAAGAAACTCCGACAGTGGTTTATATAGTACAGCCACTGATGAGAAGACATGTGTTGTCAGTAATAACTTCAATAATGATTCATTCCCCACATTTTATGAGCCCAGATTTGATGATATTGGCCTATCTGGGAGTAATGAGAAGACATTTTGTTTTGGCAGTGATCATGCTATGCCAGATGTAGATTCGATGGAGATCAGTGAGCGAATTCGAAGTACTGGAAGCTATTCAAATGTTCCACCTCTGGATGGACATAGTTGTATTATTAATGCAACGAATCCCAGTTGCACAGTGGAAGAACTCTTGCAGGAAAAGAGTTTAGCAAGCAATGCATTTAATTCATTTGTTAATAAGCAGACCCCTGGTAATCTAAATAAGGGTGCTATTCATACAGCAGAAGGGCATAAAGTTGAGCATGCCAAAAGTTATGACAATAGTGAGTTAAGTGTTAATTTTGGTAGCAGGGCCGCTGGAACTAATGCAGATACTACCTCTTGCATTGACCAGGAAAGAAGCTCTAAAGGCTATTCACTTGCTTCATACGCAAACGAGCATGCATCTATTTCGGAAAATAGTTTTGTCTGCAATAGCATTTTGGAAGAACTTAAGCGCGATAGAGGTACTTCTGAAACTGATTTGGTTTGCCCATCAGAATATCAACAAGGATATAATCTGGTACATCATGCAAACAACACATCCTCAAGGCCAATTGAAGTATTAAAAGAGGAGGTTAAAAAATCTTGGAATCATGAGGTGCTGCATACTTTTGGCAGCAGTCGCAGTGGACAAGAAGCGAATGCTATGAGTAGCACTGTGACCTCAATAAATTCTCAAGGACCTTCCCTTGTTATTTCGGAGGATAACCAATCATTTGCTACTGGCTCTGGCATATTTAGTAGCTCAGTATTGGACGATAAGCTGATAAGAGTCCCTGTTAATGGCTTAGCACGCCCAAGTGGTAGTGAGCAAACCCCTGATTTTGTAAATAATCTGAACAGGATTTATAGCACCACATCGTGGGAGCAGCCTAAATCCGAGGTTGCAGAAAATTCAAGGAACAATGAGGCCTTCAATGGTTTTTTAAATGATTCCCAACCTACTGCCGATTCCATCTCCGAGCTTAGGTGGAGAAATGGTGGGCAAAACGTCCAGCAGAGTGGATTGGCTGACAATTCTTCTGCACTTATGCCATCATCTGTCAGTTATCCGAATTTTGATCTGCTGTCAGGCAAGGGTGCAAATGGAGTGTTGAGCATAAGTGAAAAGTTTGACAACACTTCATGTTTGGAAGGATTAAAGTCAAGTAGATTAGAGCAGTTTGAGCATGACTTTCTGACTGCTCAAGCAACCTCTCAGTCAAAGGAATCAAATGTGTTGTCATATGATGAGACTCATAAGAGTATAGAGCAAGGTTTCAATTCATCTGGTTGGCCAGAGAAGGAAGCACTGCCTTCGGTGCCAAATATAGAAAGCAGGCGTGAGATTAACAGCTGTGTCTGGTGCAGAAATGAGTTTTATCATGATGTTTATGGAGCCGGAATGCAAACTGGTTCAGTGGGTTTTATGTGTGCAAACTGCCAGGGCAAGTTCTCAGGTCATGTCGGTTTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook MBD

Protein Analysis

1184

Amino Acids

128.76

Weight (kDa)

5.19

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120
malus_domestica	MD00G1009700.v1.1 MD08G1184300.v1.1 MD15G1370800.v1.1
prunus_persica	Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1
pyrus_communis	pycom08g15800
rosa_chinensis	RchiOBHm_Chr7g0238671 RchiOBHm_Chr7g0243951 RchiOBHm_Chr7g0243961
rosa_laevigata	RLG00000000820
rosa_multiflora	Rmu_sc0006110.1_g000008
rosa_roxburghii	Rroxscaffold_3G00221630
rosa_rugosa	Rorug07G0322800
rosa_samantha	Rh7AG477200 Rh7BG448500 Rh7CG495300 Rh7DG462200
rosa_wichuraiana	Rw7G039830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	2 cut(s)	378, 864
Acc36I	ACCTGC	1 cut(s)	1809
AccB1I	GGYRCC	3 cut(s)	442, 596, 3394
AccB7I	CCANNNNNTGG	1 cut(s)	2955
AccBSI	CCGCTC	2 cut(s)	165, 304
AccI	GTMKAC	2 cut(s)	12, 54
AccII	CGCG	7 cut(s)	312, 437, 513, 523, 603, 739, 2550
AclWI	GGATC	3 cut(s)	142, 1406, 1419
AcoI	YGGCCR	7 cut(s)	3, 462, 514, 518, 734, 885, 3368
AcsI	RAATTY	6 cut(s)	1449, 1585, 2145, 2764, 2986, 3148
AcuI	CTGAAG	1 cut(s)	1875
AcyI	GRCGYC	3 cut(s)	375, 443, 861
AdeI	CACNNNGTG	1 cut(s)	2955
AfaI	GTAC	7 cut(s)	422, 772, 1888, 1969, 2155, 2560, 2616
AfiI	CCNNNNNNNGG	6 cut(s)	34, 498, 2186, 2876, 2955, 3060
AflII	CTTAAG	1 cut(s)	2543
AflIII	ACRYGT	1 cut(s)	1988
AjnI	CCWGG	4 cut(s)	33, 2299, 2442, 3516
Alw21I	GWGCWC	2 cut(s)	84, 1035
Alw26I	GTCTC	6 cut(s)	935, 1032, 1077, 1853, 1935, 3320
AlwI	GGATC	3 cut(s)	142, 1406, 1419
AlwNI	CAGNNNCTG	1 cut(s)	1976
Ama87I	CYCGRG	1 cut(s)	497
ApeKI	GCWGC	9 cut(s)	189, 343, 467, 563, 581, 1323, 2695, 2709, 2962
ApoI	RAATTY	6 cut(s)	1449, 1585, 2145, 2764, 2986, 3148
ArsI	GACNNNNNNTTYG	6 cut(s)	887, 919, 1577, 1609, 3299, 3331
AseI	ATTAAT	1 cut(s)	2205
Asp700I	GAANNNNTTC	1 cut(s)	2164
AspLEI	GCGC	6 cut(s)	439, 445, 458, 513, 568, 2550
AspS9I	GGNCC	3 cut(s)	1853, 2403, 2774
AsuHPI	GGTGA	7 cut(s)	61, 116, 799, 829, 853, 859, 1751
AsuII	TTCGAA	1 cut(s)	2149
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	2 cut(s)	1853, 2774
BaeGI	GKGCMC	2 cut(s)	601, 1692
BalI	TGGCCA	3 cut(s)	5, 887, 3370
BamHI	GGATCC	1 cut(s)	1411
BanI	GGYRCC	3 cut(s)	442, 596, 3394
BanII	GRGCYC	3 cut(s)	84, 1035, 2043
BbsI	GAAGAC	3 cut(s)	163, 1991, 2087
Bbv12I	GWGCWC	2 cut(s)	84, 1035
BbvCI	CCTCAGC	1 cut(s)	609
BbvI	GCAGC	9 cut(s)	201, 355, 454, 550, 568, 1310, 2682, 2721, 2974
BceAI	ACGGC	1 cut(s)	675
BcgI	CGANNNNNNTGC	4 cut(s)	2484, 2518, 3372, 3406
BciT130I	CCWGG	4 cut(s)	35, 2301, 2444, 3518
BclI	TGATCA	1 cut(s)	2101
BcoDI	GTCTC	6 cut(s)	935, 1032, 1077, 1853, 1935, 3320
BfaI	CTAG	2 cut(s)	999, 1770
BfmI	CTRYAG	2 cut(s)	1776, 3548
BfoI	RGCGCY	2 cut(s)	446, 459
BfrI	CTTAAG	1 cut(s)	2543
BfuAI	ACCTGC	1 cut(s)	1809
BglI	GCCNNNNNGGC	2 cut(s)	440, 605
BlpI	GCTNAGC	1 cut(s)	2881
BmcAI	AGTACT	2 cut(s)	1888, 2155
Bme1390I	CCNGG	4 cut(s)	35, 2301, 2444, 3518
Bme18I	GGWCC	2 cut(s)	1853, 2774
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	3 cut(s)	1853, 2403, 2774
BmiI	GGNNCC	5 cut(s)	444, 598, 1413, 3396, 3472
BmrFI	CCNGG	4 cut(s)	35, 2301, 2444, 3518
BmrI	ACTGGG	1 cut(s)	2214
BmsI	GCATC	4 cut(s)	128, 1385, 1633, 2504
BmuI	ACTGGG	1 cut(s)	2214
BpiI	GAAGAC	3 cut(s)	163, 1991, 2087
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
Bpu10I	CCTNAGC	2 cut(s)	609, 3059
Bpu1102I	GCTNAGC	1 cut(s)	2881
Bpu14I	TTCGAA	1 cut(s)	2149
BpuEI	CTTGAG	5 cut(s)	323, 1061, 2623, 2754, 3264
BsaBI	GATNNNNATC	1 cut(s)	2132
BsaHI	GRCGYC	3 cut(s)	375, 443, 861
BsaJI	CCNNGG	6 cut(s)	459, 521, 737, 2299, 2973, 3517
BsaWI	WCCGGW	2 cut(s)	476, 553
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 498, 2186, 2876, 2955, 3060
Bse118I	RCCGGY	5 cut(s)	185, 439, 516, 568, 623
Bse1I	ACTGG	7 cut(s)	992, 1198, 1460, 2161, 2220, 2821, 3490
Bse3DI	GCAATG	3 cut(s)	625, 1617, 2272
Bse8I	GATNNNNATC	1 cut(s)	2132
BseBI	CCWGG	4 cut(s)	35, 2301, 2444, 3518
BseDI	CCNNGG	6 cut(s)	459, 521, 737, 2299, 2973, 3517
BseGI	GGATG	7 cut(s)	619, 751, 769, 835, 1439, 2191, 2633
BseJI	GATNNNNATC	1 cut(s)	2132
BseLI	CCNNNNNNNGG	6 cut(s)	34, 498, 2186, 2876, 2955, 3060
BseMI	GCAATG	3 cut(s)	625, 1617, 2272
BseMII	CTCAG	8 cut(s)	466, 600, 936, 1692, 1848, 2853, 3305, 3543
BseNI	ACTGG	7 cut(s)	992, 1198, 1460, 2161, 2220, 2821, 3490
BseSI	GKGCMC	2 cut(s)	601, 1692
BseX3I	CGGCCG	4 cut(s)	462, 514, 518, 734
BseXI	GCAGC	9 cut(s)	201, 355, 454, 550, 568, 1310, 2682, 2721, 2974
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	3 cut(s)	1040, 3102, 3460
Bsh1236I	CGCG	7 cut(s)	312, 437, 513, 523, 603, 739, 2550
Bsh1285I	CGRYCG	7 cut(s)	163, 310, 465, 517, 521, 573, 737
BshNI	GGYRCC	3 cut(s)	442, 596, 3394
BsiEI	CGRYCG	7 cut(s)	163, 310, 465, 517, 521, 573, 737
BsiHKAI	GWGCWC	2 cut(s)	84, 1035
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	8 cut(s)	186, 440, 477, 517, 554, 569, 624, 3474
BslFI	GGGAC	5 cut(s)	29, 682, 998, 1450, 2852
BslI	CCNNNNNNNGG	6 cut(s)	34, 498, 2186, 2876, 2955, 3060
BsmAI	GTCTC	6 cut(s)	935, 1032, 1077, 1853, 1935, 3320
BsmFI	GGGAC	5 cut(s)	29, 682, 998, 1450, 2852
BsmI	GAATGC	3 cut(s)	1269, 2740, 3483
BsoBI	CYCGRG	1 cut(s)	497
Bsp119I	TTCGAA	1 cut(s)	2149
Bsp1286I	GDGCHC	5 cut(s)	84, 601, 1035, 1692, 2043
Bsp143I	GATC	8 cut(s)	147, 307, 361, 1062, 1411, 2101, 2133, 3154
Bsp1720I	GCTNAGC	1 cut(s)	2881
Bsp68I	TCGCGA	1 cut(s)	312
BspCNI	CTCAG	8 cut(s)	465, 601, 937, 1691, 1849, 2852, 3304, 3542
BspFNI	CGCG	7 cut(s)	312, 437, 513, 523, 603, 739, 2550
BspHI	TCATGA	4 cut(s)	1309, 1936, 2686, 3457
BspLI	GGNNCC	5 cut(s)	444, 598, 1413, 3396, 3472
BspMI	ACCTGC	1 cut(s)	1809
BspPI	GGATC	3 cut(s)	142, 1406, 1419
BspQI	GCTCTTC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	2149
BspT107I	GGYRCC	3 cut(s)	442, 596, 3394
BspTI	CTTAAG	1 cut(s)	2543
BsrBI	CCGCTC	2 cut(s)	165, 304
BsrDI	GCAATG	3 cut(s)	625, 1617, 2272
BsrFI	RCCGGY	5 cut(s)	185, 439, 516, 568, 623
BsrI	ACTGG	7 cut(s)	992, 1198, 1460, 2161, 2220, 2821, 3490
BssAI	RCCGGY	5 cut(s)	185, 439, 516, 568, 623
BssECI	CCNNGG	6 cut(s)	459, 521, 737, 2299, 2973, 3517
BssMI	GATC	8 cut(s)	147, 307, 361, 1062, 1411, 2101, 2133, 3154
BssNI	GRCGYC	3 cut(s)	375, 443, 861
Bst2UI	CCWGG	4 cut(s)	35, 2301, 2444, 3518
Bst4CI	ACNGT	9 cut(s)	10, 650, 775, 899, 1709, 1777, 1955, 2230, 2752
Bst6I	CTCTTC	5 cut(s)	353, 713, 917, 1001, 1938
BstACI	GRCGYC	3 cut(s)	375, 443, 861
BstAFI	CTTAAG	1 cut(s)	2543
BstAPI	GCANNNNNTGC	1 cut(s)	2267
BstBI	TTCGAA	1 cut(s)	2149
BstDSI	CCRYGG	2 cut(s)	521, 737
BstF5I	GGATG	7 cut(s)	619, 751, 769, 835, 1439, 2191, 2633
BstFNI	CGCG	7 cut(s)	312, 437, 513, 523, 603, 739, 2550
BstH2I	RGCGCY	2 cut(s)	446, 459
BstHHI	GCGC	6 cut(s)	439, 445, 458, 513, 568, 2550
BstKTI	GATC	8 cut(s)	150, 310, 364, 1065, 1414, 2104, 2136, 3157
BstMAI	GTCTC	6 cut(s)	935, 1032, 1077, 1853, 1935, 3320
BstMBI	GATC	8 cut(s)	147, 307, 361, 1062, 1411, 2101, 2133, 3154
BstMCI	CGRYCG	7 cut(s)	163, 310, 465, 517, 521, 573, 737
BstNI	CCWGG	4 cut(s)	35, 2301, 2444, 3518
BstNSI	RCATGY	3 cut(s)	1992, 2357, 2495
BstSCI	CCNGG	4 cut(s)	33, 2299, 2442, 3516
BstSFI	CTRYAG	2 cut(s)	1776, 3548
BstSLI	GKGCMC	2 cut(s)	601, 1692
BstUI	CGCG	7 cut(s)	312, 437, 513, 523, 603, 739, 2550
BstV1I	GCAGC	9 cut(s)	201, 355, 454, 550, 568, 1310, 2682, 2721, 2974
BstV2I	GAAGAC	3 cut(s)	163, 1991, 2087
BstX2I	RGATCY	1 cut(s)	1411
BstXI	CCANNNNNNTGG	1 cut(s)	3095
BstYI	RGATCY	1 cut(s)	1411
BstZI	CGGCCG	4 cut(s)	462, 514, 518, 734
BtgI	CCRYGG	2 cut(s)	521, 737
BtsCI	GGATG	7 cut(s)	619, 751, 769, 835, 1439, 2191, 2633
BtsI	GCAGTG	4 cut(s)	888, 2104, 2725, 3383
BtuMI	TCGCGA	1 cut(s)	312
BveI	ACCTGC	1 cut(s)	1809
CaiI	CAGNNNCTG	1 cut(s)	1976
CciI	TCATGA	4 cut(s)	1309, 1936, 2686, 3457
CciNI	GCGGCCGC	1 cut(s)	734
CfoI	GCGC	6 cut(s)	439, 445, 458, 513, 568, 2550
Cfr10I	RCCGGY	5 cut(s)	185, 439, 516, 568, 623
Cfr13I	GGNCC	3 cut(s)	1853, 2403, 2774
Cfr42I	CCGCGG	2 cut(s)	524, 740
Csp6I	GTAC	7 cut(s)	421, 771, 1887, 1968, 2154, 2559, 2615
CviQI	GTAC	7 cut(s)	421, 771, 1887, 1968, 2154, 2559, 2615
DinI	GGCGCC	1 cut(s)	444
DpnI	GATC	8 cut(s)	149, 309, 363, 1064, 1413, 2103, 2135, 3156
DpnII	GATC	8 cut(s)	147, 307, 361, 1062, 1411, 2101, 2133, 3154
DraI	TTTAAA	1 cut(s)	3021
DraIII	CACNNNGTG	1 cut(s)	2955
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	7 cut(s)	3, 462, 514, 518, 734, 885, 3368
EagI	CGGCCG	4 cut(s)	462, 514, 518, 734
Eam1104I	CTCTTC	5 cut(s)	353, 713, 917, 1001, 1938
EarI	CTCTTC	5 cut(s)	353, 713, 917, 1001, 1938
EciI	GGCGGA	3 cut(s)	50, 172, 206
Ecl136II	GAGCTC	2 cut(s)	82, 1033
EclXI	CGGCCG	4 cut(s)	462, 514, 518, 734
Eco147I	AGGCCT	1 cut(s)	3005
Eco24I	GRGCYC	3 cut(s)	84, 1035, 2043
Eco32I	GATATC	1 cut(s)	1546
Eco47I	GGWCC	2 cut(s)	1853, 2774
Eco52I	CGGCCG	4 cut(s)	462, 514, 518, 734
Eco53kI	GAGCTC	2 cut(s)	82, 1033
Eco57I	CTGAAG	1 cut(s)	1875
Eco88I	CYCGRG	1 cut(s)	497
EcoICRI	GAGCTC	2 cut(s)	82, 1033
EcoO109I	RGGNCCY	1 cut(s)	2774
EcoRI	GAATTC	2 cut(s)	1585, 2145
EcoRII	CCWGG	4 cut(s)	33, 2299, 2442, 3516
EcoRV	GATATC	1 cut(s)	1546
EcoT22I	ATGCAT	3 cut(s)	1648, 2272, 2497
EcoT38I	GRGCYC	3 cut(s)	84, 1035, 2043
EgeI	GGCGCC	1 cut(s)	444
EheI	GGCGCC	1 cut(s)	444
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 681, 713
FaqI	GGGAC	5 cut(s)	29, 682, 998, 1450, 2852
FauI	CCCGC	4 cut(s)	218, 423, 439, 608
FauNDI	CATATG	1 cut(s)	3319
FbaI	TGATCA	1 cut(s)	2101
FblI	GTMKAC	2 cut(s)	12, 54
FokI	GGATG	7 cut(s)	626, 758, 776, 842, 1426, 2198, 2620
FriOI	GRGCYC	3 cut(s)	84, 1035, 2043
FseI	GGCCGGCC	1 cut(s)	520
FspBI	CTAG	2 cut(s)	999, 1770
GlaI	GCGC	6 cut(s)	438, 444, 457, 512, 567, 2549
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	2 cut(s)	446, 459
HapII	CCGG	8 cut(s)	186, 440, 477, 517, 554, 569, 624, 3474
HhaI	GCGC	6 cut(s)	439, 445, 458, 513, 568, 2550
Hin1I	GRCGYC	3 cut(s)	375, 443, 861
Hin6I	GCGC	6 cut(s)	437, 443, 456, 511, 566, 2548
HinP1I	GCGC	6 cut(s)	437, 443, 456, 511, 566, 2548
HincII	GTYRAC	3 cut(s)	13, 55, 1876
HindII	GTYRAC	3 cut(s)	13, 55, 1876
HpaII	CCGG	8 cut(s)	186, 440, 477, 517, 554, 569, 624, 3474
HphI	GGTGA	7 cut(s)	61, 116, 799, 829, 853, 859, 1751
Hpy166II	GTNNAC	6 cut(s)	13, 55, 850, 856, 1876, 2723
Hpy8I	GTNNAC	6 cut(s)	13, 55, 850, 856, 1876, 2723
HpyCH4III	ACNGT	9 cut(s)	10, 650, 775, 899, 1709, 1777, 1955, 2230, 2752
HpyCH4IV	ACGT	5 cut(s)	141, 375, 852, 861, 3084
HpySE526I	ACGT	5 cut(s)	141, 375, 852, 861, 3084
Hsp92I	GRCGYC	3 cut(s)	375, 443, 861
HspAI	GCGC	6 cut(s)	437, 443, 456, 511, 566, 2548
KasI	GGCGCC	1 cut(s)	442
KroI	GCCGGC	3 cut(s)	185, 439, 516
KroNI	GCCGGC	3 cut(s)	187, 441, 518
Ksp22I	TGATCA	1 cut(s)	2101
KspI	CCGCGG	2 cut(s)	524, 740
Kzo9I	GATC	8 cut(s)	147, 307, 361, 1062, 1411, 2101, 2133, 3154
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	8 cut(s)	170, 339, 653, 1331, 1603, 1739, 2959, 3470
Lsp1109I	GCAGC	9 cut(s)	201, 355, 454, 550, 568, 1310, 2682, 2721, 2974
LweI	GCATC	4 cut(s)	128, 1385, 1633, 2504
MaeI	CTAG	2 cut(s)	999, 1770
MaeII	ACGT	5 cut(s)	141, 375, 852, 861, 3084
MaeIII	GTNAC	3 cut(s)	644, 1844, 2752
MalI	GATC	8 cut(s)	149, 309, 363, 1064, 1413, 2103, 2135, 3156
MbiI	CCGCTC	2 cut(s)	165, 304
MboI	GATC	8 cut(s)	147, 307, 361, 1062, 1411, 2101, 2133, 3154
MfeI	CAATTG	2 cut(s)	1917, 2646
MflI	RGATCY	1 cut(s)	1411
MhlI	GDGCHC	5 cut(s)	84, 601, 1035, 1692, 2043
MlsI	TGGCCA	3 cut(s)	5, 887, 3370
MluNI	TGGCCA	3 cut(s)	5, 887, 3370
Mly113I	GGCGCC	1 cut(s)	443
MlyI	GAGTC	5 cut(s)	32, 1852, 1937, 2874, 3322
MmeI	TCCRAC	6 cut(s)	381, 558, 918, 957, 1116, 1974
Mox20I	TGGCCA	3 cut(s)	5, 887, 3370
Mph1103I	ATGCAT	3 cut(s)	1648, 2272, 2497
MreI	CGCCGGCG	1 cut(s)	439
MroNI	GCCGGC	3 cut(s)	185, 439, 516
MroXI	GAANNNNTTC	1 cut(s)	2164
MscI	TGGCCA	3 cut(s)	5, 887, 3370
MslI	CAYNNNNRTG	1 cut(s)	1218
Msp20I	TGGCCA	3 cut(s)	5, 887, 3370
MspA1I	CMGCKG	5 cut(s)	467, 523, 739, 2408, 3429
MspCI	CTTAAG	1 cut(s)	2543
MspI	CCGG	8 cut(s)	186, 440, 477, 517, 554, 569, 624, 3474
MspR9I	CCNGG	4 cut(s)	35, 2301, 2444, 3518
MunI	CAATTG	2 cut(s)	1917, 2646
Mva1269I	GAATGC	3 cut(s)	1269, 2740, 3483
MvaI	CCWGG	4 cut(s)	35, 2301, 2444, 3518
MvnI	CGCG	7 cut(s)	312, 437, 513, 523, 603, 739, 2550
NaeI	GCCGGC	3 cut(s)	187, 441, 518
NarI	GGCGCC	1 cut(s)	443
NdeI	CATATG	1 cut(s)	3319
NdeII	GATC	8 cut(s)	147, 307, 361, 1062, 1411, 2101, 2133, 3154
NgoMIV	GCCGGC	3 cut(s)	185, 439, 516
NlaIV	GGNNCC	5 cut(s)	444, 598, 1413, 3396, 3472
NmeAIII	GCCGAG	2 cut(s)	440, 729
NmuCI	GTSAC	3 cut(s)	644, 1844, 2752
NotI	GCGGCCGC	1 cut(s)	734
NruI	TCGCGA	1 cut(s)	312
NsiI	ATGCAT	3 cut(s)	1648, 2272, 2497
NspI	RCATGY	3 cut(s)	1992, 2357, 2495
NspV	TTCGAA	1 cut(s)	2149
PaeI	GCATGC	2 cut(s)	2357, 2495
PagI	TCATGA	4 cut(s)	1309, 1936, 2686, 3457
PceI	AGGCCT	1 cut(s)	3005
PciI	ACATGT	1 cut(s)	1988
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 165, 366, 858
PctI	GAATGC	3 cut(s)	1269, 2740, 3483
PdiI	GCCGGC	3 cut(s)	187, 441, 518
PdmI	GAANNNNTTC	1 cut(s)	2164
PflFI	GACNNNGTC	2 cut(s)	41, 374
PflMI	CCANNNNNTGG	1 cut(s)	2955
Ple19I	CGATCG	1 cut(s)	310
PleI	GAGTC	5 cut(s)	32, 1851, 1936, 2873, 3322
PluTI	GGCGCC	1 cut(s)	446
PpsI	GAGTC	5 cut(s)	32, 1851, 1936, 2873, 3322
PpuMI	RGGWCCY	1 cut(s)	2774
PscI	ACATGT	1 cut(s)	1988
PshBI	ATTAAT	1 cut(s)	2205
PsiI	TTATAA	1 cut(s)	1121
Psp124BI	GAGCTC	2 cut(s)	84, 1035
Psp5II	RGGWCCY	1 cut(s)	2774
Psp6I	CCWGG	4 cut(s)	33, 2299, 2442, 3516
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	4 cut(s)	33, 2299, 2442, 3516
PspN4I	GGNNCC	5 cut(s)	444, 598, 1413, 3396, 3472
PspPI	GGNCC	3 cut(s)	1853, 2403, 2774
PspPPI	RGGWCCY	1 cut(s)	2774
PstNI	CAGNNNCTG	1 cut(s)	1976
PsuI	RGATCY	1 cut(s)	1411
PsyI	GACNNNGTC	2 cut(s)	41, 374
PvuI	CGATCG	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	3429
RigI	GGCCGGCC	1 cut(s)	520
RruI	TCGCGA	1 cut(s)	312
RsaI	GTAC	7 cut(s)	422, 772, 1888, 1969, 2155, 2560, 2616
RsaNI	GTAC	7 cut(s)	421, 771, 1887, 1968, 2154, 2559, 2615
RseI	CAYNNNNRTG	1 cut(s)	1218
SacI	GAGCTC	2 cut(s)	84, 1035
SacII	CCGCGG	2 cut(s)	524, 740
SalI	GTCGAC	2 cut(s)	11, 53
SapI	GCTCTTC	1 cut(s)	353
Sau3AI	GATC	8 cut(s)	147, 307, 361, 1062, 1411, 2101, 2133, 3154
Sau96I	GGNCC	3 cut(s)	1853, 2403, 2774
ScaI	AGTACT	2 cut(s)	1888, 2155
SchI	GAGTC	5 cut(s)	32, 1852, 1937, 2874, 3322
ScrFI	CCNGG	4 cut(s)	35, 2301, 2444, 3518
SduI	GDGCHC	5 cut(s)	84, 601, 1035, 1692, 2043
SfaNI	GCATC	4 cut(s)	128, 1385, 1633, 2504
SfcI	CTRYAG	2 cut(s)	1776, 3548
SfoI	GGCGCC	1 cut(s)	444
Sfr303I	CCGCGG	2 cut(s)	524, 740
SfuI	TTCGAA	1 cut(s)	2149
SgrAI	CRCCGGYG	1 cut(s)	439
SgrBI	CCGCGG	2 cut(s)	524, 740
SgrDI	CGTCGACG	1 cut(s)	11
SinI	GGWCC	2 cut(s)	1853, 2774
SmiMI	CAYNNNNRTG	1 cut(s)	1218
SmlI	CTYRAG	6 cut(s)	338, 1076, 2543, 2638, 2769, 3279
SmoI	CTYRAG	6 cut(s)	338, 1076, 2543, 2638, 2769, 3279
SphI	GCATGC	2 cut(s)	2357, 2495
SseBI	AGGCCT	1 cut(s)	3005
SspDI	GGCGCC	1 cut(s)	442
SspI	AATATT	3 cut(s)	1228, 1559, 1750
SspMI	CTAG	2 cut(s)	999, 1770
SstI	GAGCTC	2 cut(s)	84, 1035
StuI	AGGCCT	1 cut(s)	3005
StyD4I	CCNGG	4 cut(s)	33, 2299, 2442, 3516
TaaI	ACNGT	9 cut(s)	10, 650, 775, 899, 1709, 1777, 1955, 2230, 2752
TaiI	ACGT	5 cut(s)	144, 378, 855, 864, 3087
TatI	WGTACW	5 cut(s)	420, 770, 1886, 1967, 2153
TseFI	GTSAC	3 cut(s)	644, 1844, 2752
TseI	GCWGC	9 cut(s)	189, 343, 467, 563, 581, 1323, 2695, 2709, 2962
Tsp45I	GTSAC	3 cut(s)	644, 1844, 2752
TspGWI	ACGGA	2 cut(s)	31, 157
Tth111I	GACNNNGTC	2 cut(s)	41, 374
Van91I	CCANNNNNTGG	1 cut(s)	2955
Vha464I	CTTAAG	1 cut(s)	2543
VpaK11BI	GGWCC	2 cut(s)	1853, 2774
VspI	ATTAAT	1 cut(s)	2205
XapI	RAATTY	6 cut(s)	1449, 1585, 2145, 2764, 2986, 3148
XceI	RCATGY	3 cut(s)	1992, 2357, 2495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2227
XmiI	GTMKAC	2 cut(s)	12, 54
XmnI	GAANNNNTTC	1 cut(s)	2164
XspI	CTAG	2 cut(s)	999, 1770
ZraI	GACGTC	2 cut(s)	376, 862
ZrmI	AGTACT	2 cut(s)	1888, 2155
Zsp2I	ATGCAT	3 cut(s)	1648, 2272, 2497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.