Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003067

Physical Location & Seq

Genomic Coordinates Forward (+)

66557968 .. 66563236

Gene Structure 5269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG495300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3534 bp

ATGGCCACCGTCGATGACCACCACCTCCTCCACCTGGACTCCGTCCCCGTCGTCGACCTCCGCCTCCTCACCCAATCCGAGCTCTACTCCCTCTCCCTCTCCTCCTCCTCTTCCTCCGCATCTCACCGCTTCGACGACGACGTTTTGATCCCCAAAATCGACCGCTCCGTCTTCAACGAATCCGCCGGCAGCCGCAAACAGACCTACTCCCGCCTCCGCCTCGCCCCTCGCAACTCCCAATTCGCCTCCTCCAATTCCAAATCTGCCCTCCCTGCCTCCCACCTCCTCCTGTCCCAGTCGCTCGATCAAGAGAGCCGCCAGATTATCTCGCTCCTCAAGCAGCTCTTCCCCTCCGACGATCAAAACGACGACGTTCTGCTCCCCCAAACCACCACCACCACCCCCGTGCAGTACAAAATCCCCGCCGCGCCGGCGCCTTCCTTCAACGCCTCGGCCGGTGCGGTTTCTGGCGTCGATTCCTCGCTCGGGAAACGGAAGCGCGGCCGGCCGCGGAAGGATTCTAACGCCGTGGTTGCGAAACCGGAGGCGGCTGTGCCGGTCGGCTCTGCTGCGTTGGCTGGCGGTGCCCGTGGGGCTGAGGATGGCAATGCCGGTGTTTTGGTTGAGAAGCGTGATGGTGGAGCTACGGCGGTTGGGACTTTTGTGCTGAATAGCGAAGGACAGCTTGTGCCGAGTAGCGAGGGGAAGAGGAAGCGAGGGCGGCCGCGGAAGGATGAGATTAGGGTTAGGGATGAGAGGACAGTGGCGGCTTCGGTGAGGAAACCGCCGAGAGTGAAGAAGGAGGAGGATGGAGAGATGGTGATGGTGAACGTGAACGACGTCGTTGTGGATTTGGAAGCATTGGCCAATGCGGACAGTGTGTTTGGGGAGGAGTTGAGGAAGAGGACAGAGGGGTTGGAGACTGAGGCGAAGTTGTTAGGGTTTCTGGAAGGGTTGGAGGGGGACTGGCCAAGTGCTAGGAAGAAGAGGAAGATTGTGCAGGCGAGTGAGCTCGGCGACTTGTTGCCGAAGTGGTGGAAGATCATGCTGTCTCTCAAGAGGAATGGAGGTCATAAATGGCTTGTGTGTAGGCGGTTTATAAGCCCTAATGGGTTGGAGTTTGTGTCGTGCAAGGAAGTTTCTTCATACTTGCACTCTTATTTTGGACTTGGAAGCCGGTCGAATTCTGTTCATACCGATGGGAATATTCAGGTTTCTAATAAAATGGTTTTGGGAGATGGAATGCAACATGATACTAATTTTACCTATAAAGATAACAACAATGGTCATGAGCTTCTTCGCTGCTCCCCAATGCCCATTACCTCTATGAACAGCTATGTCAAGAGCATTGAAGCATCAGGAGAAGTAATGGGTATGCGAAAAAAATTGGATCCTGTAAAGAATGGTCGTTTGGGGACATCCTTGAAAATTCAAGAACCAGTTGAGATAGATGGGGAACAAACTTCTGATATGATAGCCAACTATGATTTGAGTTCTGATTTCTCTCTGGGTAAGGTAAATGATATCATGGCAAAATATTTTGGCACATCCAATGATGAATCGAATTCAATGTCCTGTGAGGAGCAAGCGATGATGGCTGACAAAACAATTTGCTTTTCTGATGGATTAAATGATGGTGTCAAGGTTGCCATCAGCTCAGTTGATGTGCCCAAAGTGGAGATAGACAGTGCTTCAAATGACATGGGAAAAGAACATGGAGCTGACTATATTGATAATCACCAATCAACTAGCACTGTAGATGATATGAAAATTGATGATGTGGATAATTGTAGGAATGGCAGGTCAATATCTGGTATTAGTGAGAGTCACATTGGACCTGAGACTGCATATAATGTTGACCAACAAAGTACTTCAGAAGCCTGCTCGCTTGTTCCTTCAATTGTGATGGAGTCTCTTCATGAAAGAGGTTCCGACAGTGGTTTATATAGTACAGCCACTGATGAGAAAACATGTGTTGTCAGTAATAACTTCAATAATGATTCATTCCCCACATTTTATGAGCCCAGATTTGATGATATTGGCCTATCTGGGAGTAATGAGAAGACATTTTGTTTTGGCAGCGATCATGCTATGCCAGATGTAGATTCCATGGAGATCAGTGAGCGAATTCGAAGTACTGGAAGCTATTCAAATGTTCCACCTCTGGATGGACATAGTTGTATTATTAATGCAACGAATCCCAGTTGCACAGTGGAAGAACTCTTGCAGGACAAGAGTTTAGCAAGCAATGCATTTAATTCTTTTGTTAATAAGCAGACCCCTGGTAATCTAAATAAGGGTGCTATTCATACAGCAGAAGGGCATAAAGTTGAGCATGCCAAAAATTATGACAATAGTGAGTTAAGTGTTAATTTTGGTAGCAGGGCCACTGGAACTAATGCAGATGCTACCTCTTGCATTGACCAGGAAAGAAGCTCTAAAGGCTATTCACTTGCTTCATATGCAAACGAGCATGCATCTATTTCAGAAAATAGTTTTCTCTGCAATAGCATTTTGGAAGAACTTAAGCCCGATAGAGGTACTTCTGAAACTGATTTGGTTTGCCCATCGGAATATCAACAAGGATATAATCTGGTAAATCATGCAAACAACACATCCTCAAGGCCAATTGAAGTATTAAAAGAGGAGGTTAAAAGATCTTGGAATGATGAGGTGCTGCATACTTTTGGCAGCAGTTGCAGTGGACAAGAAGCGAATGCTATGAGTAGCACTGTGACCTCAATAAATTCTCAAGGACCTTCCCTTGTTATTTCGGAGGATAACCAATCATTTGCTACTGGCTCTGGCATATTTAGTAGCTCAGTATTGGACGATAAGCTGATAAGATTCCCTGTTAATGACTTAGCACGCCCAAGTGGTAGTGAGCAAACCCCTGATTTTGTAAATAATCTGAACAGGATTTATAGCACCACAATGTGGGAGCAGCCTAAATCCGAGGTTGCAGAAAATTCAAGGAACAATGAGGCCATCAATGGTTTTTTAAATGATTCCCAACCTACTGCCGATTCCATCTCCGAGCTTAGGTGGAGAAATGGTGGGCAAAACGTCCAGCAGAGTGCATTGGCTGACAATTCTTCTGCACTTATGCCATCATCTGTCAGTTATCCGAACTTTGATCTGCTGTCAGGCAAGGGTGCAACTGGAGCTTTGAGCATGAGTGAAAAGTTCGACAACACTTCATGTTTGGAAGGATTAAAGTCAAGTAGATTAGAGCAGTTTGAGCATGACTTTCTGACTGCTCAAGCAACCTCTCAGTCAAAGGAATCAAATGTGTTGTCATATGATGAGACTCATGAGAGTATAGAGCAAGGTTTCAATTCATCTGGTTGGCCAGAGAAGGAACCACTTCCTTCGGTGCCAAATATGGAAAGCAGGCGTGAGATTAACAGCTGTGTCTGGTGCAGAAATGAGTTTTATCATGATGTTTATGGAGCCGGAATGCAAACTGGTTCAGTGGGTTTTATGTGTGCAAACTGCCAGGGCAAGTTCTCAGGTCATGTCGGTTTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook MBD

Protein Analysis

1177

Amino Acids

128.14

Weight (kDa)

5.05

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120
malus_domestica	MD00G1009700.v1.1 MD08G1184300.v1.1 MD15G1370800.v1.1
prunus_persica	Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1
pyrus_communis	pycom08g15800
rosa_chinensis	RchiOBHm_Chr7g0238671 RchiOBHm_Chr7g0243951 RchiOBHm_Chr7g0243961
rosa_laevigata	RLG00000000820
rosa_multiflora	Rmu_sc0006110.1_g000008
rosa_roxburghii	Rroxscaffold_3G00221630
rosa_rugosa	Rorug07G0322800
rosa_samantha	Rh7AG477200 Rh7BG448500 Rh7CG495300 Rh7DG462200
rosa_wichuraiana	Rw7G039830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1100
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	1 cut(s)	843
Acc36I	ACCTGC	1 cut(s)	1791
AccB1I	GGYRCC	3 cut(s)	433, 584, 3376
AccB7I	CCANNNNNTGG	1 cut(s)	2937
AccBSI	CCGCTC	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	4 cut(s)	428, 501, 511, 727
AclWI	GGATC	3 cut(s)	142, 1385, 1398
AcoI	YGGCCR	8 cut(s)	3, 453, 502, 506, 722, 864, 968, 3350
AcsI	RAATTY	6 cut(s)	1183, 1428, 1564, 2127, 2746, 2968
AcuI	CTGAAG	1 cut(s)	1857
AcyI	GRCGYC	3 cut(s)	434, 471, 840
AdeI	CACNNNGTG	1 cut(s)	2937
AfaI	GTAC	5 cut(s)	413, 1870, 1951, 2137, 2542
AfiI	CCNNNNNNNGG	6 cut(s)	34, 486, 2168, 2537, 2937, 3042
AflII	CTTAAG	1 cut(s)	2525
AflIII	ACRYGT	1 cut(s)	1970
AjnI	CCWGG	4 cut(s)	33, 2281, 2424, 3498
AjuI	GAANNNNNNNTTGG	2 cut(s)	1394, 1426
AleI	CACNNNNGTG	1 cut(s)	404
Alw21I	GWGCWC	2 cut(s)	84, 1014
Alw26I	GTCTC	5 cut(s)	914, 1056, 1835, 1917, 3302
AlwI	GGATC	3 cut(s)	142, 1385, 1398
AlwNI	CAGNNNCTG	1 cut(s)	1958
Ama87I	CYCGRG	1 cut(s)	485
ApeKI	GCWGC	8 cut(s)	189, 340, 569, 1302, 2079, 2677, 2691, 2944
ApoI	RAATTY	6 cut(s)	1183, 1428, 1564, 2127, 2746, 2968
ArsI	GACNNNNNNTTYG	6 cut(s)	866, 898, 1556, 1588, 3281, 3313
AseI	ATTAAT	1 cut(s)	2187
Asp700I	GAANNNNTTC	2 cut(s)	2146, 3366
AspLEI	GCGC	3 cut(s)	430, 436, 501
AspS9I	GGNCC	3 cut(s)	1835, 2385, 2756
AsuHPI	GGTGA	6 cut(s)	61, 116, 787, 832, 838, 1730
AsuII	TTCGAA	1 cut(s)	2131
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	2 cut(s)	1835, 2756
BaeGI	GKGCMC	2 cut(s)	589, 1671
BalI	TGGCCA	4 cut(s)	5, 866, 970, 3352
BamHI	GGATCC	1 cut(s)	1390
BanI	GGYRCC	3 cut(s)	433, 584, 3376
BanII	GRGCYC	3 cut(s)	84, 1014, 2025
BbsI	GAAGAC	2 cut(s)	163, 2069
Bbv12I	GWGCWC	2 cut(s)	84, 1014
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	8 cut(s)	201, 352, 556, 1289, 2091, 2664, 2703, 2956
BceAI	ACGGC	2 cut(s)	512, 663
BciT130I	CCWGG	4 cut(s)	35, 2283, 2426, 3500
BcoDI	GTCTC	5 cut(s)	914, 1056, 1835, 1917, 3302
BfaI	CTAG	2 cut(s)	978, 1749
BfmI	CTRYAG	2 cut(s)	1755, 3530
BfoI	RGCGCY	1 cut(s)	437
BfrI	CTTAAG	1 cut(s)	2525
BfuAI	ACCTGC	1 cut(s)	1791
BglI	GCCNNNNNGGC	2 cut(s)	431, 593
BglII	AGATCT	1 cut(s)	2657
BmcAI	AGTACT	2 cut(s)	1870, 2137
Bme1390I	CCNGG	4 cut(s)	35, 2283, 2426, 3500
Bme18I	GGWCC	2 cut(s)	1835, 2756
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	3 cut(s)	1835, 2385, 2756
BmiI	GGNNCC	7 cut(s)	435, 586, 1392, 1930, 3363, 3378, 3454
BmrFI	CCNGG	4 cut(s)	35, 2283, 2426, 3500
BmrI	ACTGGG	2 cut(s)	289, 2196
BmsI	GCATC	4 cut(s)	128, 1364, 2395, 2486
BmuI	ACTGGG	2 cut(s)	289, 2196
BpiI	GAAGAC	2 cut(s)	163, 2069
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpmI	CTGGAG	1 cut(s)	3183
Bpu10I	CCTNAGC	2 cut(s)	597, 3041
Bpu14I	TTCGAA	1 cut(s)	2131
BpuEI	CTTGAG	5 cut(s)	320, 1040, 2605, 2736, 3246
BsaHI	GRCGYC	3 cut(s)	434, 471, 840
BsaJI	CCNNGG	9 cut(s)	450, 509, 528, 589, 725, 2109, 2281, 2955, 3499
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 486, 2168, 2537, 2937, 3042
Bse118I	RCCGGY	7 cut(s)	185, 430, 455, 504, 556, 611, 1176
Bse1I	ACTGG	9 cut(s)	295, 971, 1439, 2143, 2202, 2395, 2803, 3166, 3472
Bse3DI	GCAATG	2 cut(s)	613, 2254
BseBI	CCWGG	4 cut(s)	35, 2283, 2426, 3500
BseDI	CCNNGG	9 cut(s)	450, 509, 528, 589, 725, 2109, 2281, 2955, 3499
BseGI	GGATG	8 cut(s)	607, 739, 757, 814, 1418, 1547, 2173, 2615
BseLI	CCNNNNNNNGG	6 cut(s)	34, 486, 2168, 2537, 2937, 3042
BseMI	GCAATG	2 cut(s)	613, 2254
BseMII	CTCAG	7 cut(s)	588, 915, 1671, 1830, 2835, 3287, 3525
BseNI	ACTGG	9 cut(s)	295, 971, 1439, 2143, 2202, 2395, 2803, 3166, 3472
BseSI	GKGCMC	2 cut(s)	589, 1671
BseX3I	CGGCCG	4 cut(s)	453, 502, 506, 722
BseXI	GCAGC	8 cut(s)	201, 352, 556, 1289, 2091, 2664, 2703, 2956
BsgI	GTGCAG	4 cut(s)	428, 1019, 3084, 3442
Bsh1236I	CGCG	4 cut(s)	428, 501, 511, 727
Bsh1285I	CGRYCG	7 cut(s)	163, 456, 505, 509, 561, 725, 1181
BshNI	GGYRCC	3 cut(s)	433, 584, 3376
BsiEI	CGRYCG	7 cut(s)	163, 456, 505, 509, 561, 725, 1181
BsiHKAI	GWGCWC	2 cut(s)	84, 1014
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	9 cut(s)	186, 431, 456, 505, 542, 557, 612, 1177, 3456
BslFI	GGGAC	5 cut(s)	29, 277, 670, 977, 1429
BslI	CCNNNNNNNGG	6 cut(s)	34, 486, 2168, 2537, 2937, 3042
BsmAI	GTCTC	5 cut(s)	914, 1056, 1835, 1917, 3302
BsmFI	GGGAC	5 cut(s)	29, 277, 670, 977, 1429
BsmI	GAATGC	3 cut(s)	1248, 2722, 3465
BsoBI	CYCGRG	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	2131
Bsp1286I	GDGCHC	5 cut(s)	84, 589, 1014, 1671, 2025
Bsp143I	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
Bsp19I	CCATGG	1 cut(s)	2109
BspCNI	CTCAG	7 cut(s)	589, 916, 1670, 1831, 2834, 3286, 3524
BspFNI	CGCG	4 cut(s)	428, 501, 511, 727
BspHI	TCATGA	4 cut(s)	1288, 1918, 3313, 3439
BspLI	GGNNCC	7 cut(s)	435, 586, 1392, 1930, 3363, 3378, 3454
BspMI	ACCTGC	1 cut(s)	1791
BspPI	GGATC	3 cut(s)	142, 1385, 1398
BspQI	GCTCTTC	1 cut(s)	350
BspT104I	TTCGAA	1 cut(s)	2131
BspT107I	GGYRCC	3 cut(s)	433, 584, 3376
BspTI	CTTAAG	1 cut(s)	2525
BsrBI	CCGCTC	1 cut(s)	165
BsrDI	GCAATG	2 cut(s)	613, 2254
BsrFI	RCCGGY	7 cut(s)	185, 430, 455, 504, 556, 611, 1176
BsrI	ACTGG	9 cut(s)	295, 971, 1439, 2143, 2202, 2395, 2803, 3166, 3472
BssAI	RCCGGY	7 cut(s)	185, 430, 455, 504, 556, 611, 1176
BssECI	CCNNGG	9 cut(s)	450, 509, 528, 589, 725, 2109, 2281, 2955, 3499
BssMI	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
BssNI	GRCGYC	3 cut(s)	434, 471, 840
BssT1I	CCWWGG	1 cut(s)	2109
Bst2UI	CCWGG	4 cut(s)	35, 2283, 2426, 3500
Bst4CI	ACNGT	8 cut(s)	10, 763, 878, 1688, 1756, 1937, 2212, 2734
Bst6I	CTCTTC	6 cut(s)	115, 350, 701, 896, 980, 1920
BstACI	GRCGYC	3 cut(s)	434, 471, 840
BstAFI	CTTAAG	1 cut(s)	2525
BstAPI	GCANNNNNTGC	2 cut(s)	2249, 2697
BstBI	TTCGAA	1 cut(s)	2131
BstDEI	CTNAG	9 cut(s)	597, 924, 1657, 1839, 2821, 2863, 3041, 3273, 3511
BstDSI	CCRYGG	5 cut(s)	509, 528, 589, 725, 2109
BstF5I	GGATG	8 cut(s)	607, 739, 757, 814, 1418, 1547, 2173, 2615
BstFNI	CGCG	4 cut(s)	428, 501, 511, 727
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	3 cut(s)	430, 436, 501
BstKTI	GATC	9 cut(s)	150, 307, 361, 1044, 1393, 2086, 2118, 2660, 3139
BstMAI	GTCTC	5 cut(s)	914, 1056, 1835, 1917, 3302
BstMBI	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
BstMCI	CGRYCG	7 cut(s)	163, 456, 505, 509, 561, 725, 1181
BstNI	CCWGG	4 cut(s)	35, 2283, 2426, 3500
BstNSI	RCATGY	3 cut(s)	1974, 2339, 2477
BstSCI	CCNGG	4 cut(s)	33, 2281, 2424, 3498
BstSFI	CTRYAG	2 cut(s)	1755, 3530
BstSLI	GKGCMC	2 cut(s)	589, 1671
BstUI	CGCG	4 cut(s)	428, 501, 511, 727
BstV1I	GCAGC	8 cut(s)	201, 352, 556, 1289, 2091, 2664, 2703, 2956
BstV2I	GAAGAC	2 cut(s)	163, 2069
BstX2I	RGATCY	2 cut(s)	1390, 2657
BstYI	RGATCY	2 cut(s)	1390, 2657
BstZI	CGGCCG	4 cut(s)	453, 502, 506, 722
BtgI	CCRYGG	5 cut(s)	509, 528, 589, 725, 2109
BtgZI	GCGATG	1 cut(s)	1604
BtsCI	GGATG	8 cut(s)	607, 739, 757, 814, 1418, 1547, 2173, 2615
BtsI	GCAGTG	1 cut(s)	2707
BveI	ACCTGC	1 cut(s)	1791
CaiI	CAGNNNCTG	1 cut(s)	1958
CciI	TCATGA	4 cut(s)	1288, 1918, 3313, 3439
CciNI	GCGGCCGC	1 cut(s)	722
CfoI	GCGC	3 cut(s)	430, 436, 501
Cfr10I	RCCGGY	7 cut(s)	185, 430, 455, 504, 556, 611, 1176
Cfr13I	GGNCC	3 cut(s)	1835, 2385, 2756
Cfr42I	CCGCGG	2 cut(s)	512, 728
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	5 cut(s)	412, 1869, 1950, 2136, 2541
CviQI	GTAC	5 cut(s)	412, 1869, 1950, 2136, 2541
DdeI	CTNAG	9 cut(s)	597, 924, 1657, 1839, 2821, 2863, 3041, 3273, 3511
DinI	GGCGCC	1 cut(s)	435
DpnI	GATC	9 cut(s)	149, 306, 360, 1043, 1392, 2085, 2117, 2659, 3138
DpnII	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
DraI	TTTAAA	1 cut(s)	3003
DraIII	CACNNNGTG	1 cut(s)	2937
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	8 cut(s)	3, 453, 502, 506, 722, 864, 968, 3350
EagI	CGGCCG	4 cut(s)	453, 502, 506, 722
Eam1104I	CTCTTC	6 cut(s)	115, 350, 701, 896, 980, 1920
EarI	CTCTTC	6 cut(s)	115, 350, 701, 896, 980, 1920
EciI	GGCGGA	3 cut(s)	50, 172, 206
Ecl136II	GAGCTC	2 cut(s)	82, 1012
EclXI	CGGCCG	4 cut(s)	453, 502, 506, 722
Eco130I	CCWWGG	1 cut(s)	2109
Eco24I	GRGCYC	3 cut(s)	84, 1014, 2025
Eco32I	GATATC	1 cut(s)	1525
Eco47I	GGWCC	2 cut(s)	1835, 2756
Eco52I	CGGCCG	4 cut(s)	453, 502, 506, 722
Eco53kI	GAGCTC	2 cut(s)	82, 1012
Eco57I	CTGAAG	1 cut(s)	1857
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	2 cut(s)	82, 1012
EcoO109I	RGGNCCY	1 cut(s)	2756
EcoRI	GAATTC	3 cut(s)	1183, 1564, 2127
EcoRII	CCWGG	4 cut(s)	33, 2281, 2424, 3498
EcoRV	GATATC	1 cut(s)	1525
EcoT14I	CCWWGG	1 cut(s)	2109
EcoT22I	ATGCAT	2 cut(s)	2254, 2479
EcoT38I	GRGCYC	3 cut(s)	84, 1014, 2025
EgeI	GGCGCC	1 cut(s)	435
EheI	GGCGCC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	2109
FalI	AAGNNNNNCTT	4 cut(s)	329, 361, 669, 701
FaqI	GGGAC	5 cut(s)	29, 277, 670, 977, 1429
FauI	CCCGC	2 cut(s)	218, 430
FauNDI	CATATG	2 cut(s)	2461, 3301
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	8 cut(s)	614, 746, 764, 821, 1405, 1534, 2180, 2602
FriOI	GRGCYC	3 cut(s)	84, 1014, 2025
FseI	GGCCGGCC	1 cut(s)	508
FspBI	CTAG	2 cut(s)	978, 1749
GlaI	GCGC	3 cut(s)	429, 435, 500
GsuI	CTGGAG	1 cut(s)	3183
HaeII	RGCGCY	1 cut(s)	437
HapII	CCGG	9 cut(s)	186, 431, 456, 505, 542, 557, 612, 1177, 3456
HgaI	GACGC	1 cut(s)	460
HhaI	GCGC	3 cut(s)	430, 436, 501
Hin1I	GRCGYC	3 cut(s)	434, 471, 840
Hin6I	GCGC	3 cut(s)	428, 434, 499
HinP1I	GCGC	3 cut(s)	428, 434, 499
HincII	GTYRAC	2 cut(s)	55, 1858
HindII	GTYRAC	2 cut(s)	55, 1858
HpaII	CCGG	9 cut(s)	186, 431, 456, 505, 542, 557, 612, 1177, 3456
HphI	GGTGA	6 cut(s)	61, 116, 787, 832, 838, 1730
Hpy166II	GTNNAC	5 cut(s)	55, 829, 835, 1858, 2705
Hpy8I	GTNNAC	5 cut(s)	55, 829, 835, 1858, 2705
HpyCH4III	ACNGT	8 cut(s)	10, 763, 878, 1688, 1756, 1937, 2212, 2734
HpyCH4IV	ACGT	5 cut(s)	141, 372, 831, 840, 3066
HpyF3I	CTNAG	9 cut(s)	597, 924, 1657, 1839, 2821, 2863, 3041, 3273, 3511
HpySE526I	ACGT	5 cut(s)	141, 372, 831, 840, 3066
Hsp92I	GRCGYC	3 cut(s)	434, 471, 840
HspAI	GCGC	3 cut(s)	428, 434, 499
KasI	GGCGCC	1 cut(s)	433
KroI	GCCGGC	3 cut(s)	185, 430, 504
KroNI	GCCGGC	3 cut(s)	187, 432, 506
KspI	CCGCGG	2 cut(s)	512, 728
Kzo9I	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
LguI	GCTCTTC	1 cut(s)	350
Lsp1109I	GCAGC	8 cut(s)	201, 352, 556, 1289, 2091, 2664, 2703, 2956
LweI	GCATC	4 cut(s)	128, 1364, 2395, 2486
MaeI	CTAG	2 cut(s)	978, 1749
MaeII	ACGT	5 cut(s)	141, 372, 831, 840, 3066
MaeIII	GTNAC	2 cut(s)	1826, 2734
MalI	GATC	9 cut(s)	149, 306, 360, 1043, 1392, 2085, 2117, 2659, 3138
MbiI	CCGCTC	1 cut(s)	165
MboI	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
MfeI	CAATTG	2 cut(s)	1899, 2628
MflI	RGATCY	2 cut(s)	1390, 2657
MhlI	GDGCHC	5 cut(s)	84, 589, 1014, 1671, 2025
MlsI	TGGCCA	4 cut(s)	5, 866, 970, 3352
MluNI	TGGCCA	4 cut(s)	5, 866, 970, 3352
Mly113I	GGCGCC	1 cut(s)	434
MlyI	GAGTC	4 cut(s)	32, 1834, 1919, 3304
MmeI	TCCRAC	5 cut(s)	378, 897, 936, 1095, 1956
Mox20I	TGGCCA	4 cut(s)	5, 866, 970, 3352
Mph1103I	ATGCAT	2 cut(s)	2254, 2479
MreI	CGCCGGCG	1 cut(s)	430
MroNI	GCCGGC	3 cut(s)	185, 430, 504
MroXI	GAANNNNTTC	2 cut(s)	2146, 3366
MscI	TGGCCA	4 cut(s)	5, 866, 970, 3352
MslI	CAYNNNNRTG	3 cut(s)	404, 1197, 2933
Msp20I	TGGCCA	4 cut(s)	5, 866, 970, 3352
MspA1I	CMGCKG	3 cut(s)	511, 727, 3411
MspCI	CTTAAG	1 cut(s)	2525
MspI	CCGG	9 cut(s)	186, 431, 456, 505, 542, 557, 612, 1177, 3456
MspR9I	CCNGG	4 cut(s)	35, 2283, 2426, 3500
MunI	CAATTG	2 cut(s)	1899, 2628
Mva1269I	GAATGC	3 cut(s)	1248, 2722, 3465
MvaI	CCWGG	4 cut(s)	35, 2283, 2426, 3500
MvnI	CGCG	4 cut(s)	428, 501, 511, 727
NaeI	GCCGGC	3 cut(s)	187, 432, 506
NarI	GGCGCC	1 cut(s)	434
NcoI	CCATGG	1 cut(s)	2109
NdeI	CATATG	2 cut(s)	2461, 3301
NdeII	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
NgoMIV	GCCGGC	3 cut(s)	185, 430, 504
NlaIV	GGNNCC	7 cut(s)	435, 586, 1392, 1930, 3363, 3378, 3454
NmeAIII	GCCGAG	4 cut(s)	431, 717, 813, 993
NmuCI	GTSAC	2 cut(s)	1826, 2734
NotI	GCGGCCGC	1 cut(s)	722
NsiI	ATGCAT	2 cut(s)	2254, 2479
NspI	RCATGY	3 cut(s)	1974, 2339, 2477
NspV	TTCGAA	1 cut(s)	2131
OliI	CACNNNNGTG	1 cut(s)	404
PaeI	GCATGC	2 cut(s)	2339, 2477
PagI	TCATGA	4 cut(s)	1288, 1918, 3313, 3439
PciI	ACATGT	1 cut(s)	1970
PciSI	GCTCTTC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 165, 363, 837
PctI	GAATGC	3 cut(s)	1248, 2722, 3465
PdiI	GCCGGC	3 cut(s)	187, 432, 506
PdmI	GAANNNNTTC	2 cut(s)	2146, 3366
PflFI	GACNNNGTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	2937
PleI	GAGTC	4 cut(s)	32, 1833, 1918, 3304
PluTI	GGCGCC	1 cut(s)	437
PpsI	GAGTC	4 cut(s)	32, 1833, 1918, 3304
PpuMI	RGGWCCY	1 cut(s)	2756
PscI	ACATGT	1 cut(s)	1970
PshBI	ATTAAT	1 cut(s)	2187
PsiI	TTATAA	1 cut(s)	1100
Psp124BI	GAGCTC	2 cut(s)	84, 1014
Psp5II	RGGWCCY	1 cut(s)	2756
Psp6I	CCWGG	4 cut(s)	33, 2281, 2424, 3498
PspGI	CCWGG	4 cut(s)	33, 2281, 2424, 3498
PspN4I	GGNNCC	7 cut(s)	435, 586, 1392, 1930, 3363, 3378, 3454
PspPI	GGNCC	3 cut(s)	1835, 2385, 2756
PspPPI	RGGWCCY	1 cut(s)	2756
PstNI	CAGNNNCTG	1 cut(s)	1958
PsuI	RGATCY	2 cut(s)	1390, 2657
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	3411
RigI	GGCCGGCC	1 cut(s)	508
RsaI	GTAC	5 cut(s)	413, 1870, 1951, 2137, 2542
RsaNI	GTAC	5 cut(s)	412, 1869, 1950, 2136, 2541
RseI	CAYNNNNRTG	3 cut(s)	404, 1197, 2933
SacI	GAGCTC	2 cut(s)	84, 1014
SacII	CCGCGG	2 cut(s)	512, 728
SalI	GTCGAC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	350
Sau3AI	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
Sau96I	GGNCC	3 cut(s)	1835, 2385, 2756
ScaI	AGTACT	2 cut(s)	1870, 2137
SchI	GAGTC	4 cut(s)	32, 1834, 1919, 3304
ScrFI	CCNGG	4 cut(s)	35, 2283, 2426, 3500
SduI	GDGCHC	5 cut(s)	84, 589, 1014, 1671, 2025
SfaNI	GCATC	4 cut(s)	128, 1364, 2395, 2486
SfcI	CTRYAG	2 cut(s)	1755, 3530
SfoI	GGCGCC	1 cut(s)	435
Sfr303I	CCGCGG	2 cut(s)	512, 728
SfuI	TTCGAA	1 cut(s)	2131
SgrAI	CRCCGGYG	1 cut(s)	430
SgrBI	CCGCGG	2 cut(s)	512, 728
SinI	GGWCC	2 cut(s)	1835, 2756
SmiMI	CAYNNNNRTG	3 cut(s)	404, 1197, 2933
SmlI	CTYRAG	6 cut(s)	335, 1055, 2525, 2620, 2751, 3261
SmoI	CTYRAG	6 cut(s)	335, 1055, 2525, 2620, 2751, 3261
SphI	GCATGC	2 cut(s)	2339, 2477
SspDI	GGCGCC	1 cut(s)	433
SspI	AATATT	2 cut(s)	1207, 1538
SspMI	CTAG	2 cut(s)	978, 1749
SstI	GAGCTC	2 cut(s)	84, 1014
StyD4I	CCNGG	4 cut(s)	33, 2281, 2424, 3498
StyI	CCWWGG	1 cut(s)	2109
TaaI	ACNGT	8 cut(s)	10, 763, 878, 1688, 1756, 1937, 2212, 2734
TaiI	ACGT	5 cut(s)	144, 375, 834, 843, 3069
TatI	WGTACW	4 cut(s)	411, 1868, 1949, 2135
TauI	GCSGC	9 cut(s)	195, 318, 428, 504, 511, 551, 724, 727, 770
TseFI	GTSAC	2 cut(s)	1826, 2734
TseI	GCWGC	8 cut(s)	189, 340, 569, 1302, 2079, 2677, 2691, 2944
Tsp45I	GTSAC	2 cut(s)	1826, 2734
TspGWI	ACGGA	3 cut(s)	31, 157, 508
Tth111I	GACNNNGTC	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	2937
Vha464I	CTTAAG	1 cut(s)	2525
VpaK11BI	GGWCC	2 cut(s)	1835, 2756
VspI	ATTAAT	1 cut(s)	2187
XapI	RAATTY	6 cut(s)	1183, 1428, 1564, 2127, 2746, 2968
XceI	RCATGY	3 cut(s)	1974, 2339, 2477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2209
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	2 cut(s)	2146, 3366
XspI	CTAG	2 cut(s)	978, 1749
ZraI	GACGTC	1 cut(s)	841
ZrmI	AGTACT	2 cut(s)	1870, 2137
Zsp2I	ATGCAT	2 cut(s)	2254, 2479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.