Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006826

Physical Location & Seq

Genomic Coordinates Forward (+)

51028271 .. 51033238

Gene Structure 4968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1410600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGGTGAAAGTAATATCTCGATCAGCAGATGAATTCACCAAAGAACGAAGCCAAGACCTCCAGAGGGTATTCCGTAATTTTGACCCCAGCATCCGAACCCAAGAGAAAGCTGTCGAGTATGTCCGTGCACAAAATGCCGCAAAATTAGACAAGATTTTTGCGGGGCCGTTTGTTGGAGCAATGGAGGGACATATCGATTCCATTTCCTGCATGGCAAAGAATCCAAACCACTTGACAGGAATATTTTCTGGTTCAATGGATGGAGAAATTCGGCTCTGGAATTTAGCTTCCAGGCGGACAGTTTGTCGGTTTCCTGGTCACAAAGGTGTCCAAGGTTTAACAGTATCTACAGATGGGTGCGTTCTTGTTTCTTGTGGAACTGATAGCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sof1 WD40

Protein Analysis

132

Amino Acids

14.42

Weight (kDa)

9.04

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	58 - 130	2e-10	WDR5 beta-propeller domain
WD40	PF00400	59 - 95	3.8e-06	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	59 - 130	2e-06	CDC20/Fizzy WD40 domain
WDR55	PF24796	60 - 130	3.4e-07	WDR55
Beta-prop_WDR3_1st	PF25173	61 - 130	2e-10	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	61 - 130	1.2e-07	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28450
fragaria_vesca	FvH4_2g10410 FvH4_2g10410
malus_domestica	MD08G1220200.v1.1 MD15G1410600.v1.1 MD15G1410700.v1.1
prunus_persica	Prupe.1G573700_v2.0.a1 Prupe.1G573700_v2.0.a1 Prupe.3G166600_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1
pyrus_communis	pycom08g19110 pycom15g36550
rosa_chinensis	RchiOBHm_Chr6g0267881
rosa_laevigata	RLG00000013973
rosa_multiflora	Rmu_co8335391.1_g000001 Rmu_sc0000434.1_g000004 Rmu_sc0005400.1_g000008
rosa_roxburghii	Rroxscaffold_7G00200360
rosa_rugosa	Rorug06G0034600
rosa_samantha	Rh6AG156600 Rh6BG157800 Rh6DG143000
rosa_wichuraiana	Rw6G013600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	141, 164, 298
AcsI	RAATTY	3 cut(s)	35, 270, 283
AfiI	CCNNNNNNNGG	2 cut(s)	67, 176
AgsI	TTSAA	1 cut(s)	258
AhdI	GACNNNNNGTC	1 cut(s)	306
AjnI	CCWGG	2 cut(s)	293, 316
AleI	CACNNNNGTG	1 cut(s)	327
AluBI	AGCT	2 cut(s)	113, 290
AluI	AGCT	2 cut(s)	113, 290
Alw21I	GWGCWC	1 cut(s)	133
Alw44I	GTGCAC	1 cut(s)	129
AoxI	GGCC	1 cut(s)	167
ApaLI	GTGCAC	1 cut(s)	129
ApoI	RAATTY	3 cut(s)	35, 270, 283
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
Asp700I	GAANNNNTTC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	19, 31
BaeGI	GKGCMC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	133
BccI	CCATC	2 cut(s)	257, 350
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	2 cut(s)	295, 318
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	295, 318
BmeRI	GACNNNNNGTC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	295, 318
BmsI	GCATC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 176
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	295, 318
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	93, 268
BseLI	CCNNNNNNNGG	2 cut(s)	67, 176
BseMI	GCAATG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	89
BshFI	GGCC	1 cut(s)	169
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	67, 176
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	3 cut(s)	141, 164, 298
BspANI	GGCC	1 cut(s)	169
BspDI	ATCGAT	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	295, 318
Bst4CI	ACNGT	2 cut(s)	304, 346
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	93, 268
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	2 cut(s)	295, 318
BstSCI	CCNGG	2 cut(s)	293, 316
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	169
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	93, 268
Cfr13I	GGNCC	1 cut(s)	167
ClaI	ATCGAT	1 cut(s)	198
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	5 cut(s)	54, 113, 169, 277, 290
CviKI_1	RGCY	5 cut(s)	54, 113, 169, 277, 290
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
DriI	GACNNNNNGTC	1 cut(s)	306
Eam1105I	GACNNNNNGTC	1 cut(s)	306
EciI	GGCGGA	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	293, 316
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	123, 195, 215
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	1 cut(s)	213
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	2 cut(s)	80, 275
Fsp4HI	GCNGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	141
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	2 cut(s)	200, 223
HphI	GGTGA	2 cut(s)	19, 31
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	3 cut(s)	21, 64, 280
Hpy8I	GTNNAC	1 cut(s)	131
HpyCH4III	ACNGT	2 cut(s)	304, 346
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	2 cut(s)	131, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	392
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	179
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	5 cut(s)	35, 79, 146, 270, 283
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	60, 71, 181
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	295, 318
MvaI	CCWGG	2 cut(s)	295, 318
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	200, 223
PkrI	GCNGC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	293, 316
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	293, 316
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	295, 318
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	7 cut(s)	9, 63, 115, 292, 331, 340, 395
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	5 cut(s)	35, 79, 146, 270, 283
SsiI	CCGC	3 cut(s)	141, 164, 298
SspI	AATATT	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	293, 316
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	304, 346
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	3 cut(s)	22, 117, 198
TasI	AATT	5 cut(s)	35, 79, 146, 270, 283
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	200, 223
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	2 cut(s)	17, 48
TspGWI	ACGGA	2 cut(s)	65, 116
VneI	GTGCAC	1 cut(s)	129
XapI	RAATTY	3 cut(s)	35, 270, 283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.