pycom08g19110

DDB1- and CUL4-associated factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
19157135 .. 19161354
4220 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19110.16

Sequence Viewer

Length: 1356 bp
ATGAAGGTGAAAGTAATATCTCGATCCGCAGATGAATTCACTAAAGAACGAAGCCAAGACCTCCAGAGGGTATTCCGTAACTTCGACCCCAGCATCCGAACCCAAGAGAAAGCCGTCGAGTATGTCCGGGCACAAAACGCTGCAAAATTAGATAAGATTTTCGCGAGGCCGTTTGTTGGAGCAATGGAGGGACATATAGATTCCATTTCCTGCATGGCAAAGAATCCAAACCACTTGATAGGAATATTTTCTGGTTCAATGGATGGAGAAATTCGGCTTTGGGATCTAGCTTCCAGGCGAACAGTTGGTCGGTTTCCTGGTCATAAAGGTGCTGTCCAAGGTTTAACAGTATCTACGGACGGGCGTGTTCTTGTGTCTTGTGGAACTGATAGCACTGTTAGGCTTTGGAGTGTACCTGTTTCTAATCTTCTGGAGGAAGATGCCTCATCCGATAAGTCTGCTCAACCACGGGAAACTTATGTTTGGAAGAATGCGTTCCGGTCCGTTGATCACCAGTGGAATTCTGATCGGTTTGCTACGGGGGGAGCTGGAGTAGATATATGGAACCACAACAGGTCTGCACCAGAGCAGAGTTACCAATGGGGCACAGACACAGTTGTATCTGTTCGATTTAATCCTGGAGAGCCCGATATTTTGGCAACATCTGCAAGTGACCGCAGCATAGCACTTTATGACTTGCGCATGGGAAAACCAACATCAAAGTTTATAATGAGGACAAGAACCAATTCCATTTGTTGGAACCCAATGGAGCCAATCAACTTCACTGCTGCAAACGAGGACTCCAACTGCTATAGCTTTGATTGTAGAAAGTTTGGTGAAGCTACGTGTGTTCACATGGATCATGTTTCTGCTGTGATGGATATTGATTATTCTCCAACTGGTCGAGAATTTGTCACTGGGTCTTATGATAGAACTATCATGATTTTCCCGTATAATGCTGGTCACAAACGGGAGATTTATCATACGAAGAGAATGCAAAGGGTGTTTTCTGTCAAGTACAGCTGCGATGGTAGTTATGTTATTTCTGGTAGCGATGATACTAATCTTAGGCTTTGGAAGTCTAAAGCATCAGAACAATTGGGAGTTCTTCTTCCAAGGGAACAGAAAAAGCATGAGTATCATGAGGCGGTCAAAAACCGCTACAAGCACCTTCCTGAAATCAAGCGTATTGTGAGGCATAGGCACCTACCGAAACCAATATACAAGGCAGGTAAGCAAATTCGTGAACAAAATGAATCTCAGAGAAAGAAGCAAGAGAAGAGGAAGGCGCACAGTGCCCCAGGAAGCATCGTTGAAGAGCCACTACGGAAAAGAAAAATCATCAAAGTCGAGTGA

Protein Analysis

452

Amino Acids

51.51

Weight (kDa)

9.51

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 728
Acc16I TGCGCA 1 cut(s) 701
Acc36I ACCTGC 1 cut(s) 1220
AccB1I GGYRCC 1 cut(s) 1203
AccB7I CCANNNNNTGG 1 cut(s) 756
AccII CGCG 1 cut(s) 164
AciI CCGC 4 cut(s) 27, 676, 1148, 1159
AclWI GGATC 3 cut(s) 18, 291, 867
AcsI RAATTY 5 cut(s) 35, 270, 520, 908, 1239
AfaI GTAC 2 cut(s) 414, 1019
AfiI CCNNNNNNNGG 3 cut(s) 67, 176, 756
AflIII ACRYGT 1 cut(s) 845
AgsI TTSAA 2 cut(s) 258, 1316
AjnI CCWGG 4 cut(s) 293, 316, 637, 1300
AluBI AGCT 5 cut(s) 290, 548, 816, 842, 1023
AluI AGCT 5 cut(s) 290, 548, 816, 842, 1023
AlwI GGATC 3 cut(s) 18, 291, 867
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 4 cut(s) 140, 678, 788, 1023
ApoI RAATTY 5 cut(s) 35, 270, 520, 908, 1239
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
Asp700I GAANNNNTTC 3 cut(s) 247, 494, 745
AspLEI GCGC 2 cut(s) 702, 1291
AspS9I GGNCC 1 cut(s) 501
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 3 cut(s) 19, 503, 848
AvaII GGWCC 1 cut(s) 501
BaeGI GKGCMC 3 cut(s) 133, 608, 1300
BaeI ACNNNNGTAYC 2 cut(s) 603, 636
BanI GGYRCC 1 cut(s) 1203
BanII GRGCYC 1 cut(s) 648
BarI GAAGNNNNNNTAC 2 cut(s) 1308, 1340
BbvI GCAGC 4 cut(s) 127, 690, 775, 1010
BccI CCATC 3 cut(s) 257, 871, 1022
BceAI ACGGC 2 cut(s) 98, 154
BcgI CGANNNNNNTGC 4 cut(s) 440, 474, 976, 1010
BciT130I CCWGG 4 cut(s) 295, 318, 639, 1302
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 811
BfuAI ACCTGC 1 cut(s) 1220
BisI GCNGC 4 cut(s) 141, 679, 789, 1024
BlsI GCNGC 4 cut(s) 142, 680, 790, 1025
Bme1390I CCNGG 5 cut(s) 128, 295, 318, 639, 1302
Bme18I GGWCC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 4 cut(s) 566, 761, 771, 1205
BmrFI CCNGG 5 cut(s) 128, 295, 318, 639, 1302
BmrI ACTGGG 1 cut(s) 927
BmsI GCATC 4 cut(s) 102, 430, 1097, 1317
BmuI ACTGGG 1 cut(s) 927
BpmI CTGGAG 4 cut(s) 47, 452, 570, 660
BpuMI CCSGG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 846
BsaBI GATNNNNATC 1 cut(s) 1062
BsaJI CCNNGG 4 cut(s) 337, 467, 1115, 1300
BsaWI WCCGGW 1 cut(s) 498
BsaXI ACNNNNNCTCC 4 cut(s) 537, 567, 785, 815
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 176, 756
Bse1I ACTGG 3 cut(s) 514, 904, 922
Bse3DI GCAATG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 1062
BseBI CCWGG 4 cut(s) 295, 318, 639, 1302
BseDI CCNNGG 4 cut(s) 337, 467, 1115, 1300
BseGI GGATG 3 cut(s) 93, 268, 446
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 3 cut(s) 67, 176, 756
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 1274
BseNI ACTGG 3 cut(s) 514, 904, 922
BseSI GKGCMC 3 cut(s) 133, 608, 1300
BseXI GCAGC 4 cut(s) 127, 690, 775, 1010
BseYI CCCAGC 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 1203
BsiSI CCGG 2 cut(s) 127, 499
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 67, 176, 756
BsmFI GGGAC 1 cut(s) 204
BsmI GAATGC 2 cut(s) 496, 999
BsnI GGCC 1 cut(s) 169
Bsp1286I GDGCHC 4 cut(s) 133, 608, 648, 1300
Bsp143I GATC 5 cut(s) 23, 283, 508, 526, 859
Bsp68I TCGCGA 1 cut(s) 164
BspACI CCGC 4 cut(s) 27, 676, 1148, 1159
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 1273
BspFNI CGCG 1 cut(s) 164
BspHI TCATGA 2 cut(s) 939, 1141
BspLI GGNNCC 4 cut(s) 566, 761, 771, 1205
BspMI ACCTGC 1 cut(s) 1220
BspPI GGATC 3 cut(s) 18, 291, 867
BspQI GCTCTTC 1 cut(s) 1311
BspT107I GGYRCC 1 cut(s) 1203
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 3 cut(s) 514, 904, 922
BssECI CCNNGG 4 cut(s) 337, 467, 1115, 1300
BssMI GATC 5 cut(s) 23, 283, 508, 526, 859
BssT1I CCWWGG 2 cut(s) 337, 1115
Bst2UI CCWGG 4 cut(s) 295, 318, 639, 1302
Bst4CI ACNGT 5 cut(s) 304, 349, 397, 616, 1295
Bst6I CTCTTC 3 cut(s) 983, 1274, 1311
BstAPI GCANNNNNTGC 1 cut(s) 665
BstBAI YACGTR 1 cut(s) 846
BstDEI CTNAG 2 cut(s) 1067, 1260
BstDSI CCRYGG 1 cut(s) 467
BstF5I GGATG 3 cut(s) 93, 268, 446
BstFNI CGCG 1 cut(s) 164
BstHHI GCGC 2 cut(s) 702, 1291
BstKTI GATC 5 cut(s) 26, 286, 511, 529, 862
BstMBI GATC 5 cut(s) 23, 283, 508, 526, 859
BstMWI GCNNNNNNNGC 3 cut(s) 137, 665, 1295
BstNI CCWGG 4 cut(s) 295, 318, 639, 1302
BstSCI CCNGG 5 cut(s) 126, 293, 316, 637, 1300
BstSFI CTRYAG 1 cut(s) 811
BstSLI GKGCMC 3 cut(s) 133, 608, 1300
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 4 cut(s) 127, 690, 775, 1010
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 169
BtgI CCRYGG 1 cut(s) 467
BtgZI GCGATG 2 cut(s) 1041, 1068
BtsCI GGATG 3 cut(s) 93, 268, 446
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 5 cut(s) 393, 521, 783, 915, 1300
BtuMI TCGCGA 1 cut(s) 164
BveI ACCTGC 1 cut(s) 1220
CciI TCATGA 2 cut(s) 939, 1141
CfoI GCGC 2 cut(s) 702, 1291
Cfr13I GGNCC 1 cut(s) 501
CpoI CGGWCCG 1 cut(s) 501
Csp6I GTAC 2 cut(s) 413, 1018
CspI CGGWCCG 1 cut(s) 501
CviAII CATG 7 cut(s) 214, 703, 856, 863, 940, 1133, 1142
CviQI GTAC 2 cut(s) 413, 1018
DdeI CTNAG 2 cut(s) 1067, 1260
DpnI GATC 5 cut(s) 25, 285, 510, 528, 861
DpnII GATC 5 cut(s) 23, 283, 508, 526, 859
Eam1104I CTCTTC 3 cut(s) 983, 1274, 1311
EarI CTCTTC 3 cut(s) 983, 1274, 1311
Eco130I CCWWGG 2 cut(s) 337, 1115
Eco24I GRGCYC 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 501
EcoRI GAATTC 2 cut(s) 35, 520
EcoRII CCWGG 4 cut(s) 293, 316, 637, 1300
EcoT14I CCWWGG 2 cut(s) 337, 1115
EcoT38I GRGCYC 1 cut(s) 648
ErhI CCWWGG 2 cut(s) 337, 1115
FaeI CATG 7 cut(s) 217, 706, 859, 866, 943, 1136, 1145
FaqI GGGAC 1 cut(s) 204
FatI CATG 7 cut(s) 213, 702, 855, 862, 939, 1132, 1141
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 4 cut(s) 141, 679, 789, 1024
FokI GGATG 3 cut(s) 80, 275, 433
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 4 cut(s) 141, 679, 789, 1024
FspBI CTAG 1 cut(s) 287
FspI TGCGCA 1 cut(s) 701
GlaI GCGC 2 cut(s) 701, 1290
GluI GCNGC 4 cut(s) 141, 679, 789, 1024
GsaI CCCAGC 1 cut(s) 93
GsuI CTGGAG 4 cut(s) 47, 452, 570, 660
HaeIII GGCC 1 cut(s) 169
HapII CCGG 2 cut(s) 127, 499
HhaI GCGC 2 cut(s) 702, 1291
Hin1II CATG 7 cut(s) 217, 706, 859, 866, 943, 1136, 1145
Hin6I GCGC 2 cut(s) 700, 1289
HinP1I GCGC 2 cut(s) 700, 1289
HinfI GANTC 4 cut(s) 200, 223, 800, 1256
HpaII CCGG 2 cut(s) 127, 499
HphI GGTGA 3 cut(s) 19, 503, 848
Hpy166II GTNNAC 3 cut(s) 413, 853, 1247
Hpy188I TCNGA 5 cut(s) 98, 451, 526, 1093, 1263
Hpy188III TCNNGA 9 cut(s) 21, 64, 163, 431, 905, 940, 1142, 1175, 1244
Hpy8I GTNNAC 3 cut(s) 413, 853, 1247
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 1181, 1279
HpyCH4III ACNGT 5 cut(s) 304, 349, 397, 616, 1295
HpyCH4IV ACGT 1 cut(s) 845
HpyCH4V TGCA 6 cut(s) 143, 213, 581, 668, 791, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 665, 1295
HpyF3I CTNAG 2 cut(s) 1067, 1260
HpySE526I ACGT 1 cut(s) 845
Hsp92II CATG 7 cut(s) 217, 706, 859, 866, 943, 1136, 1145
HspAI GCGC 2 cut(s) 700, 1289
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 5 cut(s) 23, 283, 508, 526, 859
LguI GCTCTTC 1 cut(s) 1311
LmnI GCTCC 3 cut(s) 179, 545, 769
Lsp1109I GCAGC 4 cut(s) 127, 690, 775, 1010
LweI GCATC 4 cut(s) 102, 430, 1097, 1317
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 845
MaeIII GTNAC 5 cut(s) 77, 593, 671, 913, 962
MalI GATC 5 cut(s) 25, 285, 510, 528, 861
MboI GATC 5 cut(s) 23, 283, 508, 526, 859
MboII GAAGA 8 cut(s) 419, 449, 499, 1000, 1100, 1103, 1291, 1328
MfeI CAATTG 1 cut(s) 1097
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 4 cut(s) 133, 608, 648, 1300
MluCI AATT 8 cut(s) 35, 146, 270, 520, 745, 908, 1097, 1239
MlyI GAGTC 1 cut(s) 794
MmeI TCCRAC 4 cut(s) 157, 737, 828, 920
MroXI GAANNNNTTC 3 cut(s) 247, 494, 745
MseI TTAA 2 cut(s) 344, 633
MslI CAYNNNNRTG 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 1023
MspI CCGG 2 cut(s) 127, 499
MspR9I CCNGG 5 cut(s) 128, 295, 318, 639, 1302
MunI CAATTG 1 cut(s) 1097
Mva1269I GAATGC 2 cut(s) 496, 999
MvaI CCWGG 4 cut(s) 295, 318, 639, 1302
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 3 cut(s) 137, 665, 1295
NciI CCSGG 1 cut(s) 128
NdeII GATC 5 cut(s) 23, 283, 508, 526, 859
NlaIII CATG 7 cut(s) 217, 706, 859, 866, 943, 1136, 1145
NlaIV GGNNCC 4 cut(s) 566, 761, 771, 1205
NmuCI GTSAC 3 cut(s) 671, 913, 962
NruI TCGCGA 1 cut(s) 164
NsbI TGCGCA 1 cut(s) 701
PagI TCATGA 2 cut(s) 939, 1141
PciSI GCTCTTC 1 cut(s) 1311
PctI GAATGC 2 cut(s) 496, 999
PdmI GAANNNNTTC 3 cut(s) 247, 494, 745
PfeI GAWTC 3 cut(s) 200, 223, 1256
PflMI CCANNNNNTGG 1 cut(s) 756
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 4 cut(s) 142, 680, 790, 1025
PleI GAGTC 1 cut(s) 794
PpsI GAGTC 1 cut(s) 794
Ppu21I YACGTR 1 cut(s) 846
PsiI TTATAA 1 cut(s) 728
Psp6I CCWGG 4 cut(s) 293, 316, 637, 1300
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 4 cut(s) 293, 316, 637, 1300
PspN4I GGNNCC 4 cut(s) 566, 761, 771, 1205
PspPI GGNCC 1 cut(s) 501
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 1023
RruI TCGCGA 1 cut(s) 164
RsaI GTAC 2 cut(s) 414, 1019
RsaNI GTAC 2 cut(s) 413, 1018
RseI CAYNNNNRTG 1 cut(s) 327
Rsr2I CGGWCCG 1 cut(s) 501
RsrII CGGWCCG 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 1311
SaqAI TTAA 2 cut(s) 344, 633
SatI GCNGC 4 cut(s) 141, 679, 789, 1024
Sau3AI GATC 5 cut(s) 23, 283, 508, 526, 859
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 1 cut(s) 794
ScrFI CCNGG 5 cut(s) 128, 295, 318, 639, 1302
SduI GDGCHC 4 cut(s) 133, 608, 648, 1300
SfaNI GCATC 4 cut(s) 102, 430, 1097, 1317
SfcI CTRYAG 1 cut(s) 811
SinI GGWCC 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 8 cut(s) 35, 146, 270, 520, 745, 908, 1097, 1239
SsiI CCGC 4 cut(s) 27, 676, 1148, 1159
SspI AATATT 1 cut(s) 246
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 5 cut(s) 126, 293, 316, 637, 1300
StyI CCWWGG 2 cut(s) 337, 1115
TaaI ACNGT 5 cut(s) 304, 349, 397, 616, 1295
TaiI ACGT 1 cut(s) 848
TaqI TCGA 6 cut(s) 22, 84, 117, 628, 904, 1350
TasI AATT 8 cut(s) 35, 146, 270, 520, 745, 908, 1097, 1239
TatI WGTACW 1 cut(s) 1017
TfiI GAWTC 3 cut(s) 200, 223, 1256
Tru1I TTAA 2 cut(s) 344, 633
Tru9I TTAA 2 cut(s) 344, 633
TscAI CASTG 5 cut(s) 400, 521, 790, 922, 1300
TseFI GTSAC 3 cut(s) 671, 913, 962
TseI GCWGC 4 cut(s) 140, 678, 788, 1023
Tsp45I GTSAC 3 cut(s) 671, 913, 962
TspDTI ATGAA 3 cut(s) 17, 48, 1269
TspGWI ACGGA 4 cut(s) 65, 371, 493, 1342
TspRI CASTG 5 cut(s) 400, 521, 790, 922, 1300
Van91I CCANNNNNTGG 1 cut(s) 756
VpaK11BI GGWCC 1 cut(s) 501
XapI RAATTY 5 cut(s) 35, 270, 520, 908, 1239
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmnI GAANNNNTTC 3 cut(s) 247, 494, 745
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.