Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006826

Physical Location & Seq

Genomic Coordinates Forward (+)

18174623 .. 18180700

Gene Structure 6078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G177000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGAAGGTGAATGTAATATCTCGTTCCACAGATGAATACACTAAAGAACGAAGCCAAGACCTCCAGAGGGTATTCCGTAATTTCGACCCCAACATCCGAACGCAAGAGAAAGCAGTGGAGTACGTCCGGGCATGTAACGCCGCAAAATTAGAGAAGATTTTTGCGAGGCCATTTGTTGGAGCAATGGATGGACATATAGATTCTATTTCCTGTATGGCAAAGAATCCAAATCATTTGACAAAAATATTTTCTGGTTCAATGGATGGAGATATTCGGCTCTGGGATATAGCTTCCAGGCGAACAGTTCGTCAATTTCCTGGTCACCAAGGTGCTGTGCAAGGTTTAGCAGTATCTACAGGTGGGCGTGTTCTTGTTTCTTGTGGAACTGACAGCACTGTCAGGCTTTGGGGTGTACCTGTTTCTACTCTTCTGGAGGAAGATGTCTCATCTGATAAATCTGCTGTGCCACTGGAAACTTATGTTTGGAAGAATGCATTTCGGGCTGTTGATCACCAGTGGAATTTTGATCGTTTTGCTACAGGTGGAGCTGGAGTAGATATATGGAAACACAACAGGTCTGCACCAGAGCAGAGTTTTGAATGGGGAACAGACACAGTTGTATCTATAAAATTTAATCCTGGACAGCCAGATATCTTGGCAACATCCGCAAGTGATCGCAGCATAGCAATATATGACTTGCGCATGGGGAAACCCGCAGCGAAGTTTATTATGAGGACAAGAACCAATTCCATTTCTTGGAATCCAATGGAGCCAATCAACTTCACTGCTGCAAATGAGGACTCCAATTGCTATAGCTTTGATTCTAGAAAGCTTAATGAAGCTAAGTGTGTGCACAAGGATCATGTATCTGCTGTGATGGATATTGATTATTCTCCAACTGGTCGAGAATTTGTCACTGGATCTTATGACAGAACAGTGAGAATTTTCCAGTATAATGGTGGTCATAGCCGGGAAATTTATCATACAAAGAGAATGCAAAGGGTGTTTTGTGTCAAGTTCAGCTGTGATGCTAGTTATGTTATTTCTGGGAGTGATGACACTAATCTTAGGCTTTGGAAGGCTAAAGCATCAGAACAATTGGGAGTTCTTCTTCCAAGGGAACAGAAAAAGCATGAGTATAATGAGGCTGTCAAGAATCGCTACAAGCACCTTCCCGAAGTCAAGCGTATTGTGAGGCATAGGCACCTACCAAAACCAGTATACAAGGCAGCTGCAACATTGCGTGAGATGACCGAATCTCGAAGAAAGAAACACGAGAAGAGGAAGGCGCATAGCGCCCCAGGAAGCATCATTGAAGAGCCATTACGGAAAAGAAAAATCATCAAAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sof1 WD40

Protein Analysis

452

Amino Acids

51.38

Weight (kDa)

9.59

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28450
fragaria_vesca	FvH4_2g10410 FvH4_2g10410
malus_domestica	MD08G1220200.v1.1 MD15G1410600.v1.1 MD15G1410700.v1.1
prunus_persica	Prupe.1G573700_v2.0.a1 Prupe.1G573700_v2.0.a1 Prupe.3G166600_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1
pyrus_communis	pycom08g19110 pycom15g36550
rosa_chinensis	RchiOBHm_Chr6g0267881
rosa_laevigata	RLG00000013973
rosa_multiflora	Rmu_co8335391.1_g000001 Rmu_sc0000434.1_g000004 Rmu_sc0005400.1_g000008
rosa_roxburghii	Rroxscaffold_7G00200360
rosa_rugosa	Rorug06G0034600
rosa_samantha	Rh6AG156600 Rh6BG157800 Rh6DG143000
rosa_wichuraiana	Rw6G013600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
Acc16I	TGCGCA	1 cut(s)	701
AccB1I	GGYRCC	1 cut(s)	1203
AccB7I	CCANNNNNTGG	2 cut(s)	176, 756
AccI	GTMKAC	1 cut(s)	1221
AciI	CCGC	3 cut(s)	141, 666, 714
AclWI	GGATC	2 cut(s)	867, 928
AcsI	RAATTY	5 cut(s)	520, 629, 908, 942, 975
AfaI	GTAC	2 cut(s)	122, 414
AfiI	CCNNNNNNNGG	3 cut(s)	67, 176, 756
AgsI	TTSAA	3 cut(s)	258, 599, 1316
AjnI	CCWGG	4 cut(s)	293, 316, 637, 1300
AleI	CACNNNNGTG	1 cut(s)	327
AluBI	AGCT	7 cut(s)	290, 548, 816, 832, 842, 1023, 1232
AluI	AGCT	7 cut(s)	290, 548, 816, 832, 842, 1023, 1232
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	1 cut(s)	448
Alw44I	GTGCAC	1 cut(s)	851
AlwI	GGATC	2 cut(s)	867, 928
AoxI	GGCC	1 cut(s)	167
ApaLI	GTGCAC	1 cut(s)	851
ApeKI	GCWGC	5 cut(s)	678, 716, 788, 1229, 1232
ApoI	RAATTY	5 cut(s)	520, 629, 908, 942, 975
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
Asp700I	GAANNNNTTC	1 cut(s)	745
AspLEI	GCGC	3 cut(s)	702, 1291, 1298
AsuC2I	CCSGG	2 cut(s)	128, 971
AsuHPI	GGTGA	3 cut(s)	19, 314, 503
BaeGI	GKGCMC	1 cut(s)	855
BaeI	ACNNNNGTAYC	2 cut(s)	603, 636
BanI	GGYRCC	1 cut(s)	1203
BarI	GAAGNNNNNNTAC	2 cut(s)	1308, 1340
BauI	CACGAG	1 cut(s)	1274
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	5 cut(s)	690, 728, 775, 1219, 1241
BccI	CCATC	3 cut(s)	182, 257, 871
BciT130I	CCWGG	4 cut(s)	295, 318, 639, 1302
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	2 cut(s)	128, 971
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	2 cut(s)	825, 1032
BfmI	CTRYAG	3 cut(s)	354, 537, 811
BfoI	RGCGCY	1 cut(s)	1299
BisI	GCNGC	6 cut(s)	141, 679, 717, 789, 1230, 1233
BlsI	GCNGC	6 cut(s)	142, 680, 718, 790, 1231, 1234
Bme1390I	CCNGG	6 cut(s)	128, 295, 318, 639, 971, 1302
BmiI	GGNNCC	2 cut(s)	771, 1205
BmrFI	CCNGG	6 cut(s)	128, 295, 318, 639, 971, 1302
BmsI	GCATC	3 cut(s)	1018, 1097, 1317
BpmI	CTGGAG	3 cut(s)	47, 452, 570
BpuMI	CCSGG	2 cut(s)	128, 971
BsaJI	CCNNGG	3 cut(s)	325, 1115, 1300
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 176, 756
Bse1I	ACTGG	6 cut(s)	474, 514, 904, 922, 949, 1217
Bse3DI	GCAATG	2 cut(s)	189, 1238
BseBI	CCWGG	4 cut(s)	295, 318, 639, 1302
BseDI	CCNNGG	3 cut(s)	325, 1115, 1300
BseGI	GGATG	4 cut(s)	93, 193, 268, 662
BseLI	CCNNNNNNNGG	3 cut(s)	67, 176, 756
BseMI	GCAATG	2 cut(s)	189, 1238
BseNI	ACTGG	6 cut(s)	474, 514, 904, 922, 949, 1217
BseSI	GKGCMC	1 cut(s)	855
BseXI	GCAGC	5 cut(s)	690, 728, 775, 1219, 1241
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	1203
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	2 cut(s)	127, 970
BslI	CCNNNNNNNGG	3 cut(s)	67, 176, 756
BsmAI	GTCTC	1 cut(s)	448
BsmI	GAATGC	2 cut(s)	496, 999
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp143I	GATC	5 cut(s)	508, 526, 673, 859, 920
BspACI	CCGC	3 cut(s)	141, 666, 714
BspANI	GGCC	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	771, 1205
BspPI	GGATC	2 cut(s)	867, 928
BspQI	GCTCTTC	1 cut(s)	1311
BspT107I	GGYRCC	1 cut(s)	1203
BsrDI	GCAATG	2 cut(s)	189, 1238
BsrI	ACTGG	6 cut(s)	474, 514, 904, 922, 949, 1217
BssECI	CCNNGG	3 cut(s)	325, 1115, 1300
BssMI	GATC	5 cut(s)	508, 526, 673, 859, 920
BssNAI	GTATAC	1 cut(s)	1222
BssSI	CACGAG	1 cut(s)	1274
BssT1I	CCWWGG	2 cut(s)	325, 1115
Bst1107I	GTATAC	1 cut(s)	1222
Bst2BI	CACGAG	1 cut(s)	1274
Bst2UI	CCWGG	4 cut(s)	295, 318, 639, 1302
Bst4CI	ACNGT	4 cut(s)	304, 397, 616, 937
Bst6I	CTCTTC	3 cut(s)	432, 1274, 1311
BstDEI	CTNAG	2 cut(s)	843, 1067
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	4 cut(s)	93, 193, 268, 662
BstH2I	RGCGCY	1 cut(s)	1299
BstHHI	GCGC	3 cut(s)	702, 1291, 1298
BstKTI	GATC	5 cut(s)	511, 529, 676, 862, 923
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	5 cut(s)	508, 526, 673, 859, 920
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 500, 665, 1295
BstNI	CCWGG	4 cut(s)	295, 318, 639, 1302
BstNSI	RCATGY	1 cut(s)	135
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	6 cut(s)	126, 293, 316, 637, 969, 1300
BstSFI	CTRYAG	3 cut(s)	354, 537, 811
BstSLI	GKGCMC	1 cut(s)	855
BstV1I	GCAGC	5 cut(s)	690, 728, 775, 1219, 1241
BstX2I	RGATCY	1 cut(s)	920
BstXI	CCANNNNNNTGG	1 cut(s)	956
BstYI	RGATCY	1 cut(s)	920
BstZ17I	GTATAC	1 cut(s)	1222
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	4 cut(s)	93, 193, 268, 662
BtsI	GCAGTG	2 cut(s)	120, 783
BtsIMutI	CAGTG	7 cut(s)	120, 393, 467, 521, 783, 915, 942
CfoI	GCGC	3 cut(s)	702, 1291, 1298
Csp6I	GTAC	2 cut(s)	121, 413
CviAII	CATG	4 cut(s)	132, 703, 863, 1133
CviQI	GTAC	2 cut(s)	121, 413
DdeI	CTNAG	2 cut(s)	843, 1067
DpnI	GATC	5 cut(s)	510, 528, 675, 861, 922
DpnII	GATC	5 cut(s)	508, 526, 673, 859, 920
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
Eam1104I	CTCTTC	3 cut(s)	432, 1274, 1311
EarI	CTCTTC	3 cut(s)	432, 1274, 1311
Eco130I	CCWWGG	2 cut(s)	325, 1115
Eco32I	GATATC	1 cut(s)	652
Eco91I	GGTNACC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	320
EcoRII	CCWGG	4 cut(s)	293, 316, 637, 1300
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	325, 1115
EcoT22I	ATGCAT	1 cut(s)	496
ErhI	CCWWGG	2 cut(s)	325, 1115
FaeI	CATG	4 cut(s)	135, 706, 866, 1136
FatI	CATG	4 cut(s)	131, 702, 862, 1132
FauI	CCCGC	1 cut(s)	721
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	1221
Fnu4HI	GCNGC	6 cut(s)	141, 679, 717, 789, 1230, 1233
FokI	GGATG	4 cut(s)	80, 200, 275, 649
Fsp4HI	GCNGC	6 cut(s)	141, 679, 717, 789, 1230, 1233
FspBI	CTAG	2 cut(s)	825, 1032
FspI	TGCGCA	1 cut(s)	701
GlaI	GCGC	3 cut(s)	701, 1290, 1297
GluI	GCNGC	6 cut(s)	141, 679, 717, 789, 1230, 1233
GsuI	CTGGAG	3 cut(s)	47, 452, 570
HaeII	RGCGCY	1 cut(s)	1299
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	127, 970
HhaI	GCGC	3 cut(s)	702, 1291, 1298
Hin1II	CATG	4 cut(s)	135, 706, 866, 1136
Hin6I	GCGC	3 cut(s)	700, 1289, 1296
HinP1I	GCGC	3 cut(s)	700, 1289, 1296
HindIII	AAGCTT	1 cut(s)	830
HinfI	GANTC	7 cut(s)	200, 223, 760, 800, 821, 1156, 1256
HpaII	CCGG	2 cut(s)	127, 970
HphI	GGTGA	3 cut(s)	19, 314, 503
Hpy166II	GTNNAC	3 cut(s)	413, 853, 1222
Hpy188I	TCNGA	3 cut(s)	98, 451, 1093
Hpy188III	TCNNGA	7 cut(s)	64, 431, 825, 905, 1153, 1175, 1260
Hpy8I	GTNNAC	3 cut(s)	413, 853, 1222
HpyAV	CCTTC	3 cut(s)	1072, 1181, 1279
HpyCH4III	ACNGT	4 cut(s)	304, 397, 616, 937
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	7 cut(s)	337, 494, 581, 791, 853, 997, 1235
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 500, 665, 1295
HpyF3I	CTNAG	2 cut(s)	843, 1067
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	135, 706, 866, 1136
HspAI	GCGC	3 cut(s)	700, 1289, 1296
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	508, 526, 673, 859, 920
LguI	GCTCTTC	1 cut(s)	1311
LmnI	GCTCC	3 cut(s)	179, 545, 769
Lsp1109I	GCAGC	5 cut(s)	690, 728, 775, 1219, 1241
LweI	GCATC	3 cut(s)	1018, 1097, 1317
MaeI	CTAG	2 cut(s)	825, 1032
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	134, 320, 913
MalI	GATC	5 cut(s)	510, 528, 675, 861, 922
MboI	GATC	5 cut(s)	508, 526, 673, 859, 920
MboII	GAAGA	9 cut(s)	166, 419, 449, 499, 1100, 1103, 1275, 1291, 1328
MfeI	CAATTG	2 cut(s)	805, 1097
MflI	RGATCY	1 cut(s)	920
MhlI	GDGCHC	1 cut(s)	855
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	2 cut(s)	157, 920
MnlI	CCTC	9 cut(s)	60, 71, 159, 427, 726, 790, 1138, 1188, 1275
Mph1103I	ATGCAT	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	745
MseI	TTAA	2 cut(s)	633, 834
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	2 cut(s)	1023, 1232
MspI	CCGG	2 cut(s)	127, 970
MspR9I	CCNGG	6 cut(s)	128, 295, 318, 639, 971, 1302
MunI	CAATTG	2 cut(s)	805, 1097
Mva1269I	GAATGC	2 cut(s)	496, 999
MvaI	CCWGG	4 cut(s)	295, 318, 639, 1302
MwoI	GCNNNNNNNGC	4 cut(s)	137, 500, 665, 1295
NciI	CCSGG	2 cut(s)	128, 971
NdeII	GATC	5 cut(s)	508, 526, 673, 859, 920
NlaIII	CATG	4 cut(s)	135, 706, 866, 1136
NlaIV	GGNNCC	2 cut(s)	771, 1205
NmuCI	GTSAC	2 cut(s)	320, 913
NsbI	TGCGCA	1 cut(s)	701
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	1311
PctI	GAATGC	2 cut(s)	496, 999
PdmI	GAANNNNTTC	1 cut(s)	745
PfeI	GAWTC	6 cut(s)	200, 223, 760, 821, 1156, 1256
PflMI	CCANNNNNTGG	2 cut(s)	176, 756
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	6 cut(s)	142, 680, 718, 790, 1231, 1234
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
Psp6I	CCWGG	4 cut(s)	293, 316, 637, 1300
PspEI	GGTNACC	1 cut(s)	320
PspGI	CCWGG	4 cut(s)	293, 316, 637, 1300
PspN4I	GGNNCC	2 cut(s)	771, 1205
PsuI	RGATCY	1 cut(s)	920
PvuII	CAGCTG	2 cut(s)	1023, 1232
RsaI	GTAC	2 cut(s)	122, 414
RsaNI	GTAC	2 cut(s)	121, 413
RseI	CAYNNNNRTG	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	1311
SaqAI	TTAA	2 cut(s)	633, 834
SatI	GCNGC	6 cut(s)	141, 679, 717, 789, 1230, 1233
Sau3AI	GATC	5 cut(s)	508, 526, 673, 859, 920
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	6 cut(s)	128, 295, 318, 639, 971, 1302
SduI	GDGCHC	1 cut(s)	855
SfaNI	GCATC	3 cut(s)	1018, 1097, 1317
SfcI	CTRYAG	3 cut(s)	354, 537, 811
SmiMI	CAYNNNNRTG	1 cut(s)	327
SsiI	CCGC	3 cut(s)	141, 666, 714
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	2 cut(s)	825, 1032
StyD4I	CCNGG	6 cut(s)	126, 293, 316, 637, 969, 1300
StyI	CCWWGG	2 cut(s)	325, 1115
TaaI	ACNGT	4 cut(s)	304, 397, 616, 937
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	84, 904, 1261
TaqII	GACCGA	1 cut(s)	1268
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	6 cut(s)	200, 223, 760, 821, 1156, 1256
Tru1I	TTAA	2 cut(s)	633, 834
Tru9I	TTAA	2 cut(s)	633, 834
TscAI	CASTG	7 cut(s)	120, 400, 474, 521, 790, 922, 942
TseFI	GTSAC	2 cut(s)	320, 913
TseI	GCWGC	5 cut(s)	678, 716, 788, 1229, 1232
Tsp45I	GTSAC	2 cut(s)	320, 913
TspDTI	ATGAA	3 cut(s)	17, 48, 852
TspGWI	ACGGA	2 cut(s)	65, 1342
TspRI	CASTG	7 cut(s)	120, 400, 474, 521, 790, 922, 942
Van91I	CCANNNNNTGG	2 cut(s)	176, 756
VneI	GTGCAC	1 cut(s)	851
XapI	RAATTY	5 cut(s)	520, 629, 908, 942, 975
XbaI	TCTAGA	1 cut(s)	824
XceI	RCATGY	1 cut(s)	135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	956
XmiI	GTMKAC	1 cut(s)	1221
XmnI	GAANNNNTTC	1 cut(s)	745
XspI	CTAG	2 cut(s)	825, 1032
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.