Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005400.1

Orthogroup ID

OG0006826

Physical Location & Seq

Genomic Coordinates Reverse (-)

70879 .. 76947

Gene Structure 6069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005400.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

atgaaggtgaaagtaatatctcgatccacagatgaacataccaaggaacgaagccaagacctccagagggtgttccacaattacgaccccgccattcgaccccaagagaaggccgttgagtatgttcgggctcttaatgccgccaaattagacaagattttcgcaaagccctttgttggagcaatggatgggcatgtagatgctatttcgtgtatggcaaaaaacatgaaccacttggtaggaatattctccggttcaatggatggagatattcggcattgggatatagcttccaggcgcacagttcatcagtttcctggccaccaaggtgctgtgcgaggtttagcagtctctacagatggacgtgttcttgtctcttgtggaactgattgcagtgtcaggctctgggccgtacctatttctactgcgatggagctagatgtctcatctgacaagtctgttgagccgctagaaacttatgtttggaagaatgcatttcggtctgttgatcaccaatggaattttgatcgctttgccacaggtggagctggtgtagacatatggaaccacaacaggtctgcaccggaacagagtttggaatggggaacagacacagttatatctgtccggtttaatcctggacagcctgatcttttggcaacatccgcaagtgatcgcagcatagcactatatgacttacgcatggggaaaccaacagcgaagcttatcatggcgacaaaaaccaattctatttgttggaacccaatggagccattcaacttcactgctgcaaatgaggactgcaattgctatagctttgattctagaaagcttaatgcagcaacgtgtgtgcacaaagatcatgtttctgctgtgatggatatagattattctccaactggtagagaatttgtaactgggtcttatgatagaacagtgagaattttccagtataatggtggtcacagccgggagatttatcatacaaagagaatgcaaagggtgttttgcgtcaagttcagctgtgatgctagttatgttatttctgggagtgatgacacgaatcttaggctttggaaggctaaagcatcagaacagttgggagttcttcttccaagggaaaagaaaaggcatgaatatcatgaagctgtcaagaatcgctacaagcacctccctgaagtcaagcgtatagtgaggcacaggcacttgccaaaaccaatatacaaggcaactggtctccggcgtactatgatcgaagccgagcgaaggagagaagagaagaggaaagctcacagtgccccaggaaccattacatcaaagccattacggcaaagaagaattgtccgtgttgaggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sof1 WD40

Protein Analysis

452

Amino Acids

51.48

Weight (kDa)

9.45

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28450
fragaria_vesca	FvH4_2g10410 FvH4_2g10410
malus_domestica	MD08G1220200.v1.1 MD15G1410600.v1.1 MD15G1410700.v1.1
prunus_persica	Prupe.1G573700_v2.0.a1 Prupe.1G573700_v2.0.a1 Prupe.3G166600_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1
pyrus_communis	pycom08g19110 pycom15g36550
rosa_chinensis	RchiOBHm_Chr6g0267881
rosa_laevigata	RLG00000013973
rosa_multiflora	Rmu_co8335391.1_g000001 Rmu_sc0000434.1_g000004 Rmu_sc0005400.1_g000008
rosa_roxburghii	Rroxscaffold_7G00200360
rosa_rugosa	Rorug06G0034600
rosa_samantha	Rh6AG156600 Rh6BG157800 Rh6DG143000
rosa_wichuraiana	Rw6G013600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	4 cut(s)	90, 141, 467, 666
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	3 cut(s)	520, 908, 942
AcuI	CTGAAG	1 cut(s)	1197
AfaI	GTAC	2 cut(s)	414, 1246
AfiI	CCNNNNNNNGG	5 cut(s)	67, 109, 176, 1266, 1351
AflIII	ACRYGT	2 cut(s)	364, 845
AgsI	TTSAA	2 cut(s)	258, 778
AjiI	CACGTC	1 cut(s)	365
AjnI	CCWGG	4 cut(s)	293, 316, 637, 1300
AleI	CACNNNNGTG	1 cut(s)	327
AluBI	AGCT	9 cut(s)	290, 436, 548, 724, 816, 832, 1023, 1148, 1289
AluI	AGCT	9 cut(s)	290, 436, 548, 724, 816, 832, 1023, 1148, 1289
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	4 cut(s)	355, 379, 448, 1241
Alw44I	GTGCAC	1 cut(s)	851
AlwI	GGATC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	405
AoxI	GGCC	3 cut(s)	111, 319, 408
ApaLI	GTGCAC	1 cut(s)	851
ApeKI	GCWGC	3 cut(s)	678, 788, 839
ApoI	RAATTY	3 cut(s)	520, 908, 942
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	408
AsuC2I	CCSGG	1 cut(s)	971
AsuHPI	GGTGA	2 cut(s)	19, 503
BaeGI	GKGCMC	2 cut(s)	855, 1300
BalI	TGGCCA	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	3 cut(s)	690, 775, 851
BccI	CCATC	5 cut(s)	182, 257, 353, 424, 871
BceAI	ACGGC	3 cut(s)	98, 395, 1343
BciT130I	CCWGG	4 cut(s)	295, 318, 639, 1302
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	971
BcoDI	GTCTC	4 cut(s)	355, 379, 448, 1241
BfaI	CTAG	4 cut(s)	437, 470, 825, 1032
BfmI	CTRYAG	2 cut(s)	354, 811
BglI	GCCNNNNNGGC	1 cut(s)	1327
BisI	GCNGC	5 cut(s)	141, 467, 679, 789, 840
BlsI	GCNGC	5 cut(s)	142, 468, 680, 790, 841
Bme1390I	CCNGG	5 cut(s)	295, 318, 639, 971, 1302
BmgBI	CACGTC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	4 cut(s)	566, 761, 771, 1306
BmrFI	CCNGG	5 cut(s)	295, 318, 639, 971, 1302
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	3 cut(s)	190, 1018, 1097
BmuI	ACTGGG	1 cut(s)	927
BplI	GAGNNNNNCTC	2 cut(s)	1273, 1305
BpmI	CTGGAG	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	971
BsaI	GGTCTC	1 cut(s)	1241
BsaJI	CCNNGG	4 cut(s)	42, 325, 1115, 1300
BsaWI	WCCGGW	3 cut(s)	251, 583, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 109, 176, 1266, 1351
Bse1I	ACTGG	4 cut(s)	904, 922, 949, 1237
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	4 cut(s)	295, 318, 639, 1302
BseDI	CCNNGG	4 cut(s)	42, 325, 1115, 1300
BseGI	GGATG	3 cut(s)	193, 268, 662
BseLI	CCNNNNNNNGG	5 cut(s)	67, 109, 176, 1266, 1351
BseMI	GCAATG	1 cut(s)	189
BseNI	ACTGG	4 cut(s)	904, 922, 949, 1237
BseSI	GKGCMC	2 cut(s)	855, 1300
BseXI	GCAGC	3 cut(s)	690, 775, 851
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	3 cut(s)	113, 321, 410
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	5 cut(s)	252, 584, 628, 970, 1240
BslI	CCNNNNNNNGG	5 cut(s)	67, 109, 176, 1266, 1351
BsmAI	GTCTC	4 cut(s)	355, 379, 448, 1241
BsmI	GAATGC	2 cut(s)	496, 999
BsnI	GGCC	3 cut(s)	113, 321, 410
Bso31I	GGTCTC	1 cut(s)	1241
Bsp1286I	GDGCHC	3 cut(s)	133, 855, 1300
Bsp143I	GATC	7 cut(s)	23, 508, 526, 649, 673, 859, 1251
BspACI	CCGC	4 cut(s)	90, 141, 467, 666
BspANI	GGCC	3 cut(s)	113, 321, 410
BspHI	TCATGA	1 cut(s)	1141
BspLI	GGNNCC	4 cut(s)	566, 761, 771, 1306
BspPI	GGATC	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	1241
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	4 cut(s)	904, 922, 949, 1237
BssECI	CCNNGG	4 cut(s)	42, 325, 1115, 1300
BssMI	GATC	7 cut(s)	23, 508, 526, 649, 673, 859, 1251
BssT1I	CCWWGG	3 cut(s)	42, 325, 1115
Bst2UI	CCWGG	4 cut(s)	295, 318, 639, 1302
Bst4CI	ACNGT	5 cut(s)	304, 616, 937, 1098, 1295
Bst6I	CTCTTC	2 cut(s)	1269, 1274
BstDEI	CTNAG	1 cut(s)	1067
BstF5I	GGATG	3 cut(s)	193, 268, 662
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	7 cut(s)	26, 511, 529, 652, 676, 862, 1254
BstMAI	GTCTC	4 cut(s)	355, 379, 448, 1241
BstMBI	GATC	7 cut(s)	23, 508, 526, 649, 673, 859, 1251
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 665, 1295, 1327
BstNI	CCWGG	4 cut(s)	295, 318, 639, 1302
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	5 cut(s)	293, 316, 637, 969, 1300
BstSFI	CTRYAG	2 cut(s)	354, 811
BstSLI	GKGCMC	2 cut(s)	855, 1300
BstV1I	GCAGC	3 cut(s)	690, 775, 851
BstXI	CCANNNNNNTGG	1 cut(s)	956
BsuRI	GGCC	3 cut(s)	113, 321, 410
BtgZI	GCGATG	1 cut(s)	443
BtrI	CACGTC	1 cut(s)	365
BtsCI	GGATG	3 cut(s)	193, 268, 662
BtsI	GCAGTG	2 cut(s)	400, 783
BtsIMutI	CAGTG	4 cut(s)	400, 783, 942, 1300
CaiI	CAGNNNCTG	1 cut(s)	405
CciI	TCATGA	1 cut(s)	1141
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	408
CseI	GACGC	1 cut(s)	1000
Csp6I	GTAC	2 cut(s)	413, 1245
CviAII	CATG	7 cut(s)	194, 226, 703, 730, 863, 1133, 1142
CviQI	GTAC	2 cut(s)	413, 1245
DdeI	CTNAG	1 cut(s)	1067
DpnI	GATC	7 cut(s)	25, 510, 528, 651, 675, 861, 1253
DpnII	GATC	7 cut(s)	23, 508, 526, 649, 673, 859, 1251
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	1269, 1274
EarI	CTCTTC	2 cut(s)	1269, 1274
Eco130I	CCWWGG	3 cut(s)	42, 325, 1115
Eco24I	GRGCYC	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	1241
Eco57I	CTGAAG	1 cut(s)	1197
EcoRII	CCWGG	4 cut(s)	293, 316, 637, 1300
EcoT14I	CCWWGG	3 cut(s)	42, 325, 1115
EcoT22I	ATGCAT	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	3 cut(s)	42, 325, 1115
FaeI	CATG	7 cut(s)	197, 229, 706, 733, 866, 1136, 1145
FatI	CATG	7 cut(s)	193, 225, 702, 729, 862, 1132, 1141
FauI	CCCGC	1 cut(s)	97
FauNDI	CATATG	1 cut(s)	560
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	5 cut(s)	141, 467, 679, 789, 840
FokI	GGATG	3 cut(s)	200, 275, 649
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	5 cut(s)	141, 467, 679, 789, 840
FspBI	CTAG	4 cut(s)	437, 470, 825, 1032
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	5 cut(s)	141, 467, 679, 789, 840
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	113, 321, 410
HapII	CCGG	5 cut(s)	252, 584, 628, 970, 1240
HgaI	GACGC	1 cut(s)	1000
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	7 cut(s)	197, 229, 706, 733, 866, 1136, 1145
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HindIII	AAGCTT	2 cut(s)	722, 830
HinfI	GANTC	3 cut(s)	821, 1063, 1156
HpaII	CCGG	5 cut(s)	252, 584, 628, 970, 1240
HphI	GGTGA	2 cut(s)	19, 503
Hpy166II	GTNNAC	2 cut(s)	556, 853
Hpy188I	TCNGA	2 cut(s)	451, 1093
Hpy188III	TCNNGA	5 cut(s)	21, 64, 825, 1142, 1153
Hpy8I	GTNNAC	2 cut(s)	556, 853
HpyAV	CCTTC	3 cut(s)	103, 1072, 1260
HpyCH4III	ACNGT	5 cut(s)	304, 616, 937, 1098, 1295
HpyCH4IV	ACGT	2 cut(s)	364, 845
HpyCH4V	TGCA	8 cut(s)	393, 494, 581, 791, 804, 839, 853, 997
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 665, 1295, 1327
HpyF3I	CTNAG	1 cut(s)	1067
HpySE526I	ACGT	2 cut(s)	364, 845
Hsp92II	CATG	7 cut(s)	197, 229, 706, 733, 866, 1136, 1145
HspAI	GCGC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	7 cut(s)	23, 508, 526, 649, 673, 859, 1251
LmnI	GCTCC	4 cut(s)	179, 433, 545, 769
Lsp1109I	GCAGC	3 cut(s)	690, 775, 851
LweI	GCATC	3 cut(s)	190, 1018, 1097
MaeI	CTAG	4 cut(s)	437, 470, 825, 1032
MaeII	ACGT	2 cut(s)	364, 845
MaeIII	GTNAC	2 cut(s)	913, 962
MalI	GATC	7 cut(s)	25, 510, 528, 651, 675, 861, 1253
MboI	GATC	7 cut(s)	23, 508, 526, 649, 673, 859, 1251
MboII	GAAGA	6 cut(s)	499, 1100, 1103, 1286, 1291, 1347
MfeI	CAATTG	1 cut(s)	805
MhlI	GDGCHC	3 cut(s)	133, 855, 1300
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	8 cut(s)	79, 146, 520, 745, 805, 908, 942, 1338
MluNI	TGGCCA	1 cut(s)	321
MmeI	TCCRAC	3 cut(s)	157, 737, 920
MnlI	CCTC	8 cut(s)	60, 71, 332, 790, 1181, 1188, 1275, 1345
Mox20I	TGGCCA	1 cut(s)	321
Mph1103I	ATGCAT	1 cut(s)	496
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	3 cut(s)	135, 633, 834
MslI	CAYNNNNRTG	2 cut(s)	198, 327
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	1023
MspI	CCGG	5 cut(s)	252, 584, 628, 970, 1240
MspR9I	CCNGG	5 cut(s)	295, 318, 639, 971, 1302
MunI	CAATTG	1 cut(s)	805
Mva1269I	GAATGC	2 cut(s)	496, 999
MvaI	CCWGG	4 cut(s)	295, 318, 639, 1302
MwoI	GCNNNNNNNGC	4 cut(s)	137, 665, 1295, 1327
NciI	CCSGG	1 cut(s)	971
NdeI	CATATG	1 cut(s)	560
NdeII	GATC	7 cut(s)	23, 508, 526, 649, 673, 859, 1251
NlaIII	CATG	7 cut(s)	197, 229, 706, 733, 866, 1136, 1145
NlaIV	GGNNCC	4 cut(s)	566, 761, 771, 1306
NmeAIII	GCCGAG	1 cut(s)	1285
NmuCI	GTSAC	1 cut(s)	962
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	327
PagI	TCATGA	1 cut(s)	1141
PctI	GAATGC	2 cut(s)	496, 999
PfeI	GAWTC	3 cut(s)	821, 1063, 1156
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	5 cut(s)	142, 468, 680, 790, 841
Psp6I	CCWGG	4 cut(s)	293, 316, 637, 1300
PspGI	CCWGG	4 cut(s)	293, 316, 637, 1300
PspN4I	GGNNCC	4 cut(s)	566, 761, 771, 1306
PspPI	GGNCC	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	405
PvuII	CAGCTG	1 cut(s)	1023
RsaI	GTAC	2 cut(s)	414, 1246
RsaNI	GTAC	2 cut(s)	413, 1245
RseI	CAYNNNNRTG	2 cut(s)	198, 327
SaqAI	TTAA	3 cut(s)	135, 633, 834
SatI	GCNGC	5 cut(s)	141, 467, 679, 789, 840
Sau3AI	GATC	7 cut(s)	23, 508, 526, 649, 673, 859, 1251
Sau96I	GGNCC	1 cut(s)	408
ScrFI	CCNGG	5 cut(s)	295, 318, 639, 971, 1302
SduI	GDGCHC	3 cut(s)	133, 855, 1300
SfaNI	GCATC	3 cut(s)	190, 1018, 1097
SfcI	CTRYAG	2 cut(s)	354, 811
SmiMI	CAYNNNNRTG	2 cut(s)	198, 327
Sse9I	AATT	8 cut(s)	79, 146, 520, 745, 805, 908, 942, 1338
SsiI	CCGC	4 cut(s)	90, 141, 467, 666
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	4 cut(s)	437, 470, 825, 1032
StyD4I	CCNGG	5 cut(s)	293, 316, 637, 969, 1300
StyI	CCWWGG	3 cut(s)	42, 325, 1115
TaaI	ACNGT	5 cut(s)	304, 616, 937, 1098, 1295
TaiI	ACGT	2 cut(s)	367, 848
TaqI	TCGA	3 cut(s)	22, 97, 1254
TaqII	GACCGA	1 cut(s)	489
TasI	AATT	8 cut(s)	79, 146, 520, 745, 805, 908, 942, 1338
TauI	GCSGC	2 cut(s)	143, 469
TfiI	GAWTC	3 cut(s)	821, 1063, 1156
Tru1I	TTAA	3 cut(s)	135, 633, 834
Tru9I	TTAA	3 cut(s)	135, 633, 834
TscAI	CASTG	4 cut(s)	400, 790, 942, 1300
TseFI	GTSAC	1 cut(s)	962
TseI	GCWGC	3 cut(s)	678, 788, 839
Tsp45I	GTSAC	1 cut(s)	962
TspDTI	ATGAA	6 cut(s)	17, 48, 242, 296, 1149, 1158
TspGWI	ACGGA	1 cut(s)	1334
TspRI	CASTG	4 cut(s)	400, 790, 942, 1300
VneI	GTGCAC	1 cut(s)	851
XapI	RAATTY	3 cut(s)	520, 908, 942
XbaI	TCTAGA	1 cut(s)	824
XceI	RCATGY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	956
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	4 cut(s)	437, 470, 825, 1032
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.