Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006826

Physical Location & Seq

Genomic Coordinates Forward (+)

36540006 .. 36547461

Gene Structure 7456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36550.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGAAGGTGAAAGTAATATCACGATCCGCAGATGAATTCACCAAAGAACGAAGCCAAGACCTCCAGAGGGTATTCCGTAATTTCGACCCCAGCATCCGAACCCAAGAGAAAGCTGTCGAGTATGTCCGGGCACAAAACGCCGCGAAATTAGATAAGATTTTTGCGAGGCCGTTTGTTGGAGCAATGGAGGGACATATAGATTCCATTTCTTGCATGGCAAAGAATCCAAACCACTTGACAGGAATATTTTCTGGTTCAATGGATGGAGAAATTCGGCTCTGGAATCTAGCTTCCAGGCGGACAGTTTGTCGGTTTCCTGGTCACAAAGGTGCTGTCCAAGGTTTAACAGTATCTACAGATGGGCGCGTTCTTGTTTCTTGTGGAACTGATAGCTCTATTAGGCTCTGGGGTGTACCTGTTTCTAATCTCCTGGAGGAAGATGTATCATCTGATAAATCTGCTGAGCCACGGGAAACTTATGTTTGGAAGAATGCGTTTCGGTCTGTTGATCACCAGTGGAATTCTGATCGGTTTGCTACGGGTGGAGCTGGAGTAGATGTATGGAACCACAACAGGTCTGCACCAGAGCAGAGTTACCAATGGGGCACAGACACGGTTGTATCTGTTCGATTTAATCCTGGAGAGCCAGATATCTTGGCAACATCTGCAAGTGATCGCAGCATAGCACTATATGACTTGCGCATGGGAAAACCAACATCAAAGTTTATAATGAGGACAAGAACCAATTCCATTTGTTGGAACCCAATGGAGCCAATCAACTTCACTGCTGCAAATGAGGATTCCAACTGCTATAGCTTTGATTGTAGAAAGTTTGGTGAAGCTACGTGTGTTCACATGGATCATGTTTCTGCTGTGATGGATATTGATTATTCTCCAACTGGTCGAGAATTTGTCACTGGGTCTTATGATAGAACTGTGATGATTTTCCCATATAATGCTGGTCACAAACGGGAGATATATCATACGAAGAGAATGCAAAGGGTGTTTTGTGTCAAGTACAGCTGCGATGGTAGTTATGTTATTTCTGGGAGTGATGACACTAATCTTAGGCTTTGGAAGTCTAAAGCATCGGAACAATTGGGAGTTCTTCTTCCAAGGGAACAGAAAAAGCACGAGTATCATGAGGCTGTCAAAAACCGCTACAAGCACCTTCCCGAAGTCAAGCGTATTGTGAGGCACAGGCACCTACCAAAACCAATATACAAGGCAGGTAAGCAAATTCGTGAACAAAACGAATCTCAGAGAAAGAAGCACGAGAAGAGGAAGGCCCACAGTGCCCCAGGAAGCATCGTTCAAGAGCCATTACGTAAAAGAAAAATCATCAAAGTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sof1 WD40

Protein Analysis

452

Amino Acids

51.52

Weight (kDa)

9.49

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28450
fragaria_vesca	FvH4_2g10410 FvH4_2g10410
malus_domestica	MD08G1220200.v1.1 MD15G1410600.v1.1 MD15G1410700.v1.1
prunus_persica	Prupe.1G573700_v2.0.a1 Prupe.1G573700_v2.0.a1 Prupe.3G166600_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1
pyrus_communis	pycom08g19110 pycom15g36550
rosa_chinensis	RchiOBHm_Chr6g0267881
rosa_laevigata	RLG00000013973
rosa_multiflora	Rmu_co8335391.1_g000001 Rmu_sc0000434.1_g000004 Rmu_sc0005400.1_g000008
rosa_roxburghii	Rroxscaffold_7G00200360
rosa_rugosa	Rorug06G0034600
rosa_samantha	Rh6AG156600 Rh6BG157800 Rh6DG143000
rosa_wichuraiana	Rw6G013600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	728
Acc16I	TGCGCA	1 cut(s)	701
Acc36I	ACCTGC	1 cut(s)	1220
AccB1I	GGYRCC	1 cut(s)	1203
AccB7I	CCANNNNNTGG	1 cut(s)	756
AccII	CGCG	2 cut(s)	143, 366
AciI	CCGC	4 cut(s)	27, 141, 298, 1159
AclWI	GGATC	2 cut(s)	18, 867
AcsI	RAATTY	5 cut(s)	35, 270, 520, 908, 1239
AfaI	GTAC	2 cut(s)	414, 1019
AfiI	CCNNNNNNNGG	3 cut(s)	67, 176, 756
AflIII	ACRYGT	1 cut(s)	845
AgsI	TTSAA	2 cut(s)	258, 1316
AhdI	GACNNNNNGTC	1 cut(s)	306
AjnI	CCWGG	5 cut(s)	293, 316, 429, 637, 1300
AleI	CACNNNNGTG	1 cut(s)	327
AloI	GAACNNNNNNTCC	2 cut(s)	1296, 1328
AluBI	AGCT	7 cut(s)	113, 290, 393, 548, 816, 842, 1023
AluI	AGCT	7 cut(s)	113, 290, 393, 548, 816, 842, 1023
AlwI	GGATC	2 cut(s)	18, 867
AoxI	GGCC	2 cut(s)	167, 1287
ApeKI	GCWGC	3 cut(s)	678, 788, 1023
ApoI	RAATTY	5 cut(s)	35, 270, 520, 908, 1239
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
Asp700I	GAANNNNTTC	2 cut(s)	247, 745
AspLEI	GCGC	2 cut(s)	366, 702
AspS9I	GGNCC	1 cut(s)	1288
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	4 cut(s)	19, 31, 503, 848
BaeGI	GKGCMC	3 cut(s)	133, 608, 1300
BaeI	ACNNNNGTAYC	2 cut(s)	603, 636
BanI	GGYRCC	1 cut(s)	1203
BauI	CACGAG	2 cut(s)	1133, 1274
BbvI	GCAGC	3 cut(s)	690, 775, 1010
BccI	CCATC	4 cut(s)	257, 353, 871, 1022
BceAI	ACGGC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	976, 1010
BciT130I	CCWGG	5 cut(s)	295, 318, 431, 639, 1302
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	128
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	2 cut(s)	354, 811
BfuAI	ACCTGC	1 cut(s)	1220
BisI	GCNGC	4 cut(s)	141, 679, 789, 1024
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	4 cut(s)	142, 680, 790, 1025
Bme1390I	CCNGG	6 cut(s)	128, 295, 318, 431, 639, 1302
BmeRI	GACNNNNNGTC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	1288
BmiI	GGNNCC	4 cut(s)	566, 761, 771, 1205
BmrFI	CCNGG	6 cut(s)	128, 295, 318, 431, 639, 1302
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	3 cut(s)	102, 1097, 1317
BmuI	ACTGGG	1 cut(s)	927
BpmI	CTGGAG	4 cut(s)	47, 452, 570, 660
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	128
BsaAI	YACGTR	2 cut(s)	846, 1328
BsaJI	CCNNGG	4 cut(s)	337, 467, 1115, 1300
BsaXI	ACNNNNNCTCC	4 cut(s)	537, 543, 567, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 176, 756
Bse1I	ACTGG	3 cut(s)	514, 904, 922
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	5 cut(s)	295, 318, 431, 639, 1302
BseDI	CCNNGG	4 cut(s)	337, 467, 1115, 1300
BseGI	GGATG	2 cut(s)	93, 268
BseLI	CCNNNNNNNGG	3 cut(s)	67, 176, 756
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	453, 1274
BseNI	ACTGG	3 cut(s)	514, 904, 922
BseSI	GKGCMC	3 cut(s)	133, 608, 1300
BseXI	GCAGC	3 cut(s)	690, 775, 1010
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	2 cut(s)	143, 366
BshFI	GGCC	2 cut(s)	169, 1289
BshNI	GGYRCC	1 cut(s)	1203
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	3 cut(s)	67, 176, 756
BsmFI	GGGAC	1 cut(s)	204
BsmI	GAATGC	2 cut(s)	496, 999
BsnI	GGCC	2 cut(s)	169, 1289
Bsp1286I	GDGCHC	3 cut(s)	133, 608, 1300
Bsp143I	GATC	5 cut(s)	23, 508, 526, 673, 859
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	4 cut(s)	27, 141, 298, 1159
BspANI	GGCC	2 cut(s)	169, 1289
BspCNI	CTCAG	2 cut(s)	454, 1273
BspFNI	CGCG	2 cut(s)	143, 366
BspHI	TCATGA	1 cut(s)	1141
BspLI	GGNNCC	4 cut(s)	566, 761, 771, 1205
BspMI	ACCTGC	1 cut(s)	1220
BspPI	GGATC	2 cut(s)	18, 867
BspT107I	GGYRCC	1 cut(s)	1203
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	514, 904, 922
BssECI	CCNNGG	4 cut(s)	337, 467, 1115, 1300
BssMI	GATC	5 cut(s)	23, 508, 526, 673, 859
BssSI	CACGAG	2 cut(s)	1133, 1274
BssT1I	CCWWGG	2 cut(s)	337, 1115
Bst2BI	CACGAG	2 cut(s)	1133, 1274
Bst2UI	CCWGG	5 cut(s)	295, 318, 431, 639, 1302
Bst4CI	ACNGT	5 cut(s)	304, 349, 616, 937, 1295
Bst6I	CTCTTC	2 cut(s)	983, 1274
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstBAI	YACGTR	2 cut(s)	846, 1328
BstDEI	CTNAG	3 cut(s)	462, 1067, 1260
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	93, 268
BstFNI	CGCG	2 cut(s)	143, 366
BstHHI	GCGC	2 cut(s)	366, 702
BstKTI	GATC	5 cut(s)	26, 511, 529, 676, 862
BstMBI	GATC	5 cut(s)	23, 508, 526, 673, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 665, 1295
BstNI	CCWGG	5 cut(s)	295, 318, 431, 639, 1302
BstSCI	CCNGG	6 cut(s)	126, 293, 316, 429, 637, 1300
BstSFI	CTRYAG	2 cut(s)	354, 811
BstSLI	GKGCMC	3 cut(s)	133, 608, 1300
BstSNI	TACGTA	1 cut(s)	1328
BstUI	CGCG	2 cut(s)	143, 366
BstV1I	GCAGC	3 cut(s)	690, 775, 1010
BsuRI	GGCC	2 cut(s)	169, 1289
BtgI	CCRYGG	1 cut(s)	467
BtgZI	GCGATG	1 cut(s)	1041
BtsCI	GGATG	2 cut(s)	93, 268
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	4 cut(s)	521, 783, 915, 1300
BveI	ACCTGC	1 cut(s)	1220
CciI	TCATGA	1 cut(s)	1141
CfoI	GCGC	2 cut(s)	366, 702
Cfr13I	GGNCC	1 cut(s)	1288
Csp6I	GTAC	2 cut(s)	413, 1018
CviAII	CATG	5 cut(s)	214, 703, 856, 863, 1142
CviQI	GTAC	2 cut(s)	413, 1018
DdeI	CTNAG	3 cut(s)	462, 1067, 1260
DpnI	GATC	5 cut(s)	25, 510, 528, 675, 861
DpnII	GATC	5 cut(s)	23, 508, 526, 673, 859
DriI	GACNNNNNGTC	1 cut(s)	306
Eam1104I	CTCTTC	2 cut(s)	983, 1274
Eam1105I	GACNNNNNGTC	1 cut(s)	306
EarI	CTCTTC	2 cut(s)	983, 1274
EciI	GGCGGA	1 cut(s)	313
Eco105I	TACGTA	1 cut(s)	1328
Eco130I	CCWWGG	2 cut(s)	337, 1115
Eco32I	GATATC	1 cut(s)	652
EcoRI	GAATTC	2 cut(s)	35, 520
EcoRII	CCWGG	5 cut(s)	293, 316, 429, 637, 1300
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	337, 1115
ErhI	CCWWGG	2 cut(s)	337, 1115
FaeI	CATG	5 cut(s)	217, 706, 859, 866, 1145
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	5 cut(s)	213, 702, 855, 862, 1141
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	4 cut(s)	141, 679, 789, 1024
FokI	GGATG	2 cut(s)	80, 275
Fsp4HI	GCNGC	4 cut(s)	141, 679, 789, 1024
FspBI	CTAG	1 cut(s)	287
FspI	TGCGCA	1 cut(s)	701
GlaI	GCGC	2 cut(s)	365, 701
GluI	GCNGC	4 cut(s)	141, 679, 789, 1024
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	4 cut(s)	47, 452, 570, 660
HaeIII	GGCC	2 cut(s)	169, 1289
HapII	CCGG	1 cut(s)	127
HhaI	GCGC	2 cut(s)	366, 702
Hin1II	CATG	5 cut(s)	217, 706, 859, 866, 1145
Hin6I	GCGC	2 cut(s)	364, 700
HinP1I	GCGC	2 cut(s)	364, 700
HinfI	GANTC	5 cut(s)	200, 223, 283, 800, 1256
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	4 cut(s)	19, 31, 503, 848
Hpy166II	GTNNAC	3 cut(s)	413, 853, 1247
Hpy188I	TCNGA	5 cut(s)	98, 451, 526, 1093, 1263
Hpy188III	TCNNGA	8 cut(s)	21, 64, 280, 905, 1142, 1175, 1244, 1316
Hpy8I	GTNNAC	3 cut(s)	413, 853, 1247
HpyAV	CCTTC	2 cut(s)	1181, 1279
HpyCH4III	ACNGT	5 cut(s)	304, 349, 616, 937, 1295
HpyCH4IV	ACGT	2 cut(s)	845, 1327
HpyCH4V	TGCA	5 cut(s)	213, 581, 668, 791, 997
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 665, 1295
HpyF3I	CTNAG	3 cut(s)	462, 1067, 1260
HpySE526I	ACGT	2 cut(s)	845, 1327
Hsp92II	CATG	5 cut(s)	217, 706, 859, 866, 1145
HspAI	GCGC	2 cut(s)	364, 700
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	23, 508, 526, 673, 859
LmnI	GCTCC	3 cut(s)	179, 545, 769
Lsp1109I	GCAGC	3 cut(s)	690, 775, 1010
LweI	GCATC	3 cut(s)	102, 1097, 1317
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	2 cut(s)	845, 1327
MaeIII	GTNAC	4 cut(s)	320, 593, 913, 962
MalI	GATC	5 cut(s)	25, 510, 528, 675, 861
MboI	GATC	5 cut(s)	23, 508, 526, 673, 859
MboII	GAAGA	6 cut(s)	449, 499, 1000, 1100, 1103, 1291
MfeI	CAATTG	1 cut(s)	1097
MhlI	GDGCHC	3 cut(s)	133, 608, 1300
MluCI	AATT	9 cut(s)	35, 79, 146, 270, 520, 745, 908, 1097, 1239
MmeI	TCCRAC	4 cut(s)	157, 737, 828, 920
MroXI	GAANNNNTTC	2 cut(s)	247, 745
MseI	TTAA	2 cut(s)	344, 633
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	1023
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	6 cut(s)	128, 295, 318, 431, 639, 1302
MunI	CAATTG	1 cut(s)	1097
Mva1269I	GAATGC	2 cut(s)	496, 999
MvaI	CCWGG	5 cut(s)	295, 318, 431, 639, 1302
MvnI	CGCG	2 cut(s)	143, 366
MwoI	GCNNNNNNNGC	3 cut(s)	137, 665, 1295
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	5 cut(s)	23, 508, 526, 673, 859
NlaIII	CATG	5 cut(s)	217, 706, 859, 866, 1145
NlaIV	GGNNCC	4 cut(s)	566, 761, 771, 1205
NmuCI	GTSAC	3 cut(s)	320, 913, 962
NsbI	TGCGCA	1 cut(s)	701
OliI	CACNNNNGTG	1 cut(s)	327
PagI	TCATGA	1 cut(s)	1141
PctI	GAATGC	2 cut(s)	496, 999
PdmI	GAANNNNTTC	2 cut(s)	247, 745
PfeI	GAWTC	5 cut(s)	200, 223, 283, 800, 1256
PflMI	CCANNNNNTGG	1 cut(s)	756
PfoI	TCCNGGA	2 cut(s)	429, 637
PkrI	GCNGC	4 cut(s)	142, 680, 790, 1025
Ppu21I	YACGTR	2 cut(s)	846, 1328
PsiI	TTATAA	1 cut(s)	728
Psp6I	CCWGG	5 cut(s)	293, 316, 429, 637, 1300
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	5 cut(s)	293, 316, 429, 637, 1300
PspN4I	GGNNCC	4 cut(s)	566, 761, 771, 1205
PspPI	GGNCC	1 cut(s)	1288
PvuII	CAGCTG	1 cut(s)	1023
RsaI	GTAC	2 cut(s)	414, 1019
RsaNI	GTAC	2 cut(s)	413, 1018
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	344, 633
SatI	GCNGC	4 cut(s)	141, 679, 789, 1024
Sau3AI	GATC	5 cut(s)	23, 508, 526, 673, 859
Sau96I	GGNCC	1 cut(s)	1288
ScrFI	CCNGG	6 cut(s)	128, 295, 318, 431, 639, 1302
SduI	GDGCHC	3 cut(s)	133, 608, 1300
SfaNI	GCATC	3 cut(s)	102, 1097, 1317
SfcI	CTRYAG	2 cut(s)	354, 811
SmiMI	CAYNNNNRTG	1 cut(s)	327
SnaBI	TACGTA	1 cut(s)	1328
Sse9I	AATT	9 cut(s)	35, 79, 146, 270, 520, 745, 908, 1097, 1239
SsiI	CCGC	4 cut(s)	27, 141, 298, 1159
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	6 cut(s)	126, 293, 316, 429, 637, 1300
StyI	CCWWGG	2 cut(s)	337, 1115
TaaI	ACNGT	5 cut(s)	304, 349, 616, 937, 1295
TaiI	ACGT	2 cut(s)	848, 1330
TaqI	TCGA	5 cut(s)	84, 117, 628, 904, 1350
TaqII	GACCGA	1 cut(s)	489
TasI	AATT	9 cut(s)	35, 79, 146, 270, 520, 745, 908, 1097, 1239
TatI	WGTACW	1 cut(s)	1017
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	5 cut(s)	200, 223, 283, 800, 1256
Tru1I	TTAA	2 cut(s)	344, 633
Tru9I	TTAA	2 cut(s)	344, 633
TscAI	CASTG	4 cut(s)	521, 790, 922, 1300
TseFI	GTSAC	3 cut(s)	320, 913, 962
TseI	GCWGC	3 cut(s)	678, 788, 1023
Tsp45I	GTSAC	3 cut(s)	320, 913, 962
TspDTI	ATGAA	2 cut(s)	17, 48
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	4 cut(s)	521, 790, 922, 1300
Van91I	CCANNNNNTGG	1 cut(s)	756
XapI	RAATTY	5 cut(s)	35, 270, 520, 908, 1239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmnI	GAANNNNTTC	2 cut(s)	247, 745
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.