DDB1- and CUL4-associated factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28450 |
| fragaria_vesca | FvH4_2g10410 FvH4_2g10410 |
| malus_domestica | MD08G1220200.v1.1 MD15G1410600.v1.1 MD15G1410700.v1.1 |
| prunus_persica | Prupe.1G573700_v2.0.a1 Prupe.1G573700_v2.0.a1 Prupe.3G166600_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 |
| pyrus_communis | pycom08g19110 pycom15g36550 |
| rosa_chinensis | RchiOBHm_Chr6g0267881 |
| rosa_laevigata | RLG00000013973 |
| rosa_multiflora | Rmu_co8335391.1_g000001 Rmu_sc0000434.1_g000004 Rmu_sc0005400.1_g000008 |
| rosa_roxburghii | Rroxscaffold_7G00200360 |
| rosa_rugosa | Rorug06G0034600 |
| rosa_samantha | Rh6AG156600 Rh6BG157800 Rh6DG143000 |
| rosa_wichuraiana | Rw6G013600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 92 |
| AccII | CGCG | 1 cut(s) | 292 |
| AcsI | RAATTY | 3 cut(s) | 52, 80, 86 |
| AgsI | TTSAA | 1 cut(s) | 191 |
| ApeKI | GCWGC | 1 cut(s) | 270 |
| ApoI | RAATTY | 3 cut(s) | 52, 80, 86 |
| AspLEI | GCGC | 1 cut(s) | 294 |
| AsuHPI | GGTGA | 1 cut(s) | 35 |
| BbvI | GCAGC | 1 cut(s) | 282 |
| BceAI | ACGGC | 1 cut(s) | 323 |
| BclI | TGATCA | 1 cut(s) | 40 |
| BisI | GCNGC | 1 cut(s) | 271 |
| BlsI | GCNGC | 1 cut(s) | 272 |
| BmsI | GCATC | 1 cut(s) | 150 |
| BsaJI | CCNNGG | 1 cut(s) | 305 |
| Bse1I | ACTGG | 2 cut(s) | 46, 235 |
| BseDI | CCNNGG | 1 cut(s) | 305 |
| BseNI | ACTGG | 2 cut(s) | 46, 235 |
| BseXI | GCAGC | 1 cut(s) | 282 |
| BsgI | GTGCAG | 1 cut(s) | 156 |
| Bsh1236I | CGCG | 1 cut(s) | 292 |
| Bsp143I | GATC | 1 cut(s) | 40 |
| BspFNI | CGCG | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 46, 235 |
| BssECI | CCNNGG | 1 cut(s) | 305 |
| BssMI | GATC | 1 cut(s) | 40 |
| Bst4CI | ACNGT | 3 cut(s) | 73, 127, 155 |
| BstDSI | CCRYGG | 1 cut(s) | 305 |
| BstFNI | CGCG | 1 cut(s) | 292 |
| BstHHI | GCGC | 1 cut(s) | 294 |
| BstKTI | GATC | 1 cut(s) | 43 |
| BstMBI | GATC | 1 cut(s) | 40 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 257 |
| BstUI | CGCG | 1 cut(s) | 292 |
| BstV1I | GCAGC | 1 cut(s) | 282 |
| BtgI | CCRYGG | 1 cut(s) | 305 |
| BtsIMutI | CAGTG | 1 cut(s) | 53 |
| CfoI | GCGC | 1 cut(s) | 294 |
| CviAII | CATG | 3 cut(s) | 143, 295, 323 |
| CviJI | RGCY | 1 cut(s) | 238 |
| CviKI_1 | RGCY | 1 cut(s) | 238 |
| DpnI | GATC | 1 cut(s) | 42 |
| DpnII | GATC | 1 cut(s) | 40 |
| DraI | TTTAAA | 1 cut(s) | 85 |
| Eco32I | GATATC | 1 cut(s) | 244 |
| EcoRV | GATATC | 1 cut(s) | 244 |
| EcoT22I | ATGCAT | 1 cut(s) | 165 |
| FaeI | CATG | 3 cut(s) | 146, 298, 326 |
| FatI | CATG | 3 cut(s) | 142, 294, 322 |
| FbaI | TGATCA | 1 cut(s) | 40 |
| Fnu4HI | GCNGC | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 1 cut(s) | 271 |
| GlaI | GCGC | 1 cut(s) | 293 |
| GluI | GCNGC | 1 cut(s) | 271 |
| HhaI | GCGC | 1 cut(s) | 294 |
| Hin1II | CATG | 3 cut(s) | 146, 298, 326 |
| Hin6I | GCGC | 1 cut(s) | 292 |
| HinP1I | GCGC | 1 cut(s) | 292 |
| HinfI | GANTC | 1 cut(s) | 287 |
| HphI | GGTGA | 1 cut(s) | 35 |
| Hpy166II | GTNNAC | 1 cut(s) | 320 |
| Hpy8I | GTNNAC | 1 cut(s) | 320 |
| HpyCH4III | ACNGT | 3 cut(s) | 73, 127, 155 |
| HpyCH4V | TGCA | 3 cut(s) | 163, 173, 270 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 257 |
| Hsp92II | CATG | 3 cut(s) | 146, 298, 326 |
| HspAI | GCGC | 1 cut(s) | 292 |
| Ksp22I | TGATCA | 1 cut(s) | 40 |
| Kzo9I | GATC | 1 cut(s) | 40 |
| LpnPI | CCDG | 4 cut(s) | 59, 189, 216, 252 |
| Lsp1109I | GCAGC | 1 cut(s) | 282 |
| LweI | GCATC | 1 cut(s) | 150 |
| MalI | GATC | 1 cut(s) | 42 |
| MboI | GATC | 1 cut(s) | 40 |
| MboII | GAAGA | 2 cut(s) | 31, 324 |
| MluCI | AATT | 3 cut(s) | 52, 80, 86 |
| MlyI | GAGTC | 1 cut(s) | 281 |
| MnlI | CCTC | 2 cut(s) | 145, 319 |
| Mph1103I | ATGCAT | 1 cut(s) | 165 |
| MseI | TTAA | 3 cut(s) | 75, 84, 225 |
| MslI | CAYNNNNRTG | 1 cut(s) | 147 |
| MvnI | CGCG | 1 cut(s) | 292 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 257 |
| NdeII | GATC | 1 cut(s) | 40 |
| NlaIII | CATG | 3 cut(s) | 146, 298, 326 |
| NsiI | ATGCAT | 1 cut(s) | 165 |
| PkrI | GCNGC | 1 cut(s) | 272 |
| PleI | GAGTC | 1 cut(s) | 281 |
| PpsI | GAGTC | 1 cut(s) | 281 |
| PsiI | TTATAA | 1 cut(s) | 92 |
| RseI | CAYNNNNRTG | 1 cut(s) | 147 |
| SaqAI | TTAA | 3 cut(s) | 75, 84, 225 |
| SatI | GCNGC | 1 cut(s) | 271 |
| Sau3AI | GATC | 1 cut(s) | 40 |
| SchI | GAGTC | 1 cut(s) | 281 |
| SetI | ASST | 2 cut(s) | 170, 335 |
| SfaNI | GCATC | 1 cut(s) | 150 |
| SmiI | ATTTAAAT | 1 cut(s) | 85 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 147 |
| Sse9I | AATT | 3 cut(s) | 52, 80, 86 |
| SwaI | ATTTAAAT | 1 cut(s) | 85 |
| TaaI | ACNGT | 3 cut(s) | 73, 127, 155 |
| TaqI | TCGA | 1 cut(s) | 220 |
| TasI | AATT | 3 cut(s) | 52, 80, 86 |
| Tru1I | TTAA | 3 cut(s) | 75, 84, 225 |
| Tru9I | TTAA | 3 cut(s) | 75, 84, 225 |
| TscAI | CASTG | 1 cut(s) | 53 |
| TseI | GCWGC | 1 cut(s) | 270 |
| TspRI | CASTG | 1 cut(s) | 53 |
| XapI | RAATTY | 3 cut(s) | 52, 80, 86 |
| Zsp2I | ATGCAT | 1 cut(s) | 165 |