Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8335391.1

Orthogroup ID

OG0006826

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 563

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8335391.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 242 bp

atggagctagatgtctcatctgacaagtctgttgagccgctagaaacttatgtttggaagaatgcatttcggtctgttgatcaccaatggaattttgatcgctttgccacaggtggagctggtgtagacatatggaaccacaacaggtctgcaccggaacagagtttggaatggggaacagacacagttatatctgtccggtttaatcctggacagcctgatcttttggcaacatccgcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sof1 WD40

Protein Analysis

80

Amino Acids

9.0

Weight (kDa)

4.54

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28450
fragaria_vesca	FvH4_2g10410 FvH4_2g10410
malus_domestica	MD08G1220200.v1.1 MD15G1410600.v1.1 MD15G1410700.v1.1
prunus_persica	Prupe.1G573700_v2.0.a1 Prupe.1G573700_v2.0.a1 Prupe.3G166600_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1
pyrus_communis	pycom08g19110 pycom15g36550
rosa_chinensis	RchiOBHm_Chr6g0267881
rosa_laevigata	RLG00000013973
rosa_multiflora	Rmu_co8335391.1_g000001 Rmu_sc0000434.1_g000004 Rmu_sc0005400.1_g000008
rosa_roxburghii	Rroxscaffold_7G00200360
rosa_rugosa	Rorug06G0034600
rosa_samantha	Rh6AG156600 Rh6BG157800 Rh6DG143000
rosa_wichuraiana	Rw6G013600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	2 cut(s)	38, 237
AcsI	RAATTY	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	7, 119
AluI	AGCT	2 cut(s)	7, 119
Alw26I	GTCTC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	8, 41
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	210
BsaWI	WCCGGW	2 cut(s)	154, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
BseBI	CCWGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	155, 199
BsmAI	GTCTC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	79, 97, 220
BspACI	CCGC	2 cut(s)	38, 237
BspLI	GGNNCC	1 cut(s)	137
BssMI	GATC	3 cut(s)	79, 97, 220
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	233
BstKTI	GATC	3 cut(s)	82, 100, 223
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	3 cut(s)	79, 97, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	233
CviJI	RGCY	4 cut(s)	7, 37, 119, 217
CviKI_1	RGCY	4 cut(s)	7, 37, 119, 217
DpnI	GATC	3 cut(s)	81, 99, 222
DpnII	GATC	3 cut(s)	79, 97, 220
EcoRII	CCWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	67
FaiI	YATR	4 cut(s)	51, 131, 133, 191
FauNDI	CATATG	1 cut(s)	131
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	2 cut(s)	8, 41
GluI	GCNGC	1 cut(s)	38
HapII	CCGG	2 cut(s)	155, 199
HpaII	CCGG	2 cut(s)	155, 199
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	65, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	79, 97, 220
LmnI	GCTCC	2 cut(s)	4, 116
LpnPI	CCDG	8 cut(s)	96, 105, 130, 168, 195, 212, 222, 231
MaeI	CTAG	2 cut(s)	8, 41
MalI	GATC	3 cut(s)	81, 99, 222
MboI	GATC	3 cut(s)	79, 97, 220
MboII	GAAGA	1 cut(s)	70
MluCI	AATT	1 cut(s)	91
Mph1103I	ATGCAT	1 cut(s)	67
MseI	TTAA	1 cut(s)	204
MspI	CCGG	2 cut(s)	155, 199
MspR9I	CCNGG	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	3 cut(s)	79, 97, 220
NlaIV	GGNNCC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	67
PctI	GAATGC	1 cut(s)	67
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	3 cut(s)	79, 97, 220
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	4 cut(s)	9, 115, 121, 149
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	2 cut(s)	38, 237
SspMI	CTAG	2 cut(s)	8, 41
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	187
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	91
TauI	GCSGC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
XapI	RAATTY	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	2 cut(s)	8, 41
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.