Prupe.1G573700_v2.0.a1

DDB1- and CUL4-associated factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
46745178 .. 46751724
6547 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G573700.1

Sequence Viewer

Length: 1356 bp
ATGAAGGTGAATGTAATATCTCGGTCCACAGATGAATACACTAAAGAACGAAGCCAAGACCTCCAGAGGGTATTCCATAATTTCGACCCCAGCATCCGAACGCAAGAGAAAGCAGTGGAATATGTCCGGGCATGTAACGCCGCAAAATTAGAGAAGATTTTTGCGAGGCCATTTGTTGGAGCAATGGATGGACATATAGATTCAATTTCCTGTATGGCAAAGAATCCAAACCATTTGACCAGAATATTTTCTGGTTCAATGGATGGAGATATTCGGCTCTGGGATATAGCTTCCAGGCGAACAGTTTGTCAATTTCCTGGTCACCAAGGTGCTGTGCAAGGTTTAGCAGTATCTACAGATGGGCGTGTTCTTGTTTCTTGTGGAACTGACAGCACTGTCAGGCTTTGGGGTGTACCTGTTTCTACTCTTCTGGAGGAAGATGTCTCATCTGATAAATCTGCTGTGCCACTGGAAACTTATGTTTGGAAGAATGCATTTCGGGCTGTTGATCACCAGTGGAATTTTGATCGTTTTGCTACAGGTGGAGCTGGAGTAGATATATGGAACCACAACAGGTCTGCACCAGAGCAGAGTTTTGAATGGGGAACAGACACAGTTGTATCTATAAAATTTAATCCTGGACAGTCAGATATCTTGGCAACATCCGCAAGTGATCGCAGCATAGCAATATATGACTTGCGCATGGGGAAACCAGCAGCGAAGTTTATTATGAGGACAAGAACCAATTCCATTTCTTGGAATCCAATGGAGCCAATCAACTTCACTGCTGCAAATGAGGACTCCAATTGCTATAGCTTTGATTCTAGAAAGCTTAATGAAGCTAAGTGTGTGCACAAGGATCATGTATCTGCTGTGATGGATATTGATTATTCTCCAACTGGTCGAGAATTTGTCACTGGATCTTATGACAGAACAGTGAGAATTTTCCAGTATAATGGTGGGCACAGCCGGGAAATTTATCATACAAAGAGAATGCAAAGGGTGTTTTGTGTCAAGTTCAGCTGTGATGCTAGTTATGTTATTTCTGGGAGTGATGACACTAATCTTAGGCTTTGGAAGGCTAAAGCATCAGAACAATTGGGAGTTCTTCTTCCAAGGGAACAGAAAAAGCATGAATATAATGAGGCGGTCAAGAATCGCTACAAGCACCTTCCGGAAGTCAAGCGTATTGTGAGGCATAGGCACCTACCAAAACCAGTATACAAGGCAGCTGCAACACTGCGTGAGATGACCGACTCTCGGAGAAAGAAACATGAGAAGAGGAAGGCGCATAGCGCCCCTGGAAGCATCATTGAAGAGCCATTACGGAAAAGAAAAATCATCAAAGTTGAGTGA

Protein Analysis

452

Amino Acids

51.33

Weight (kDa)

9.41

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
Acc16I TGCGCA 1 cut(s) 701
AccB1I GGYRCC 1 cut(s) 1203
AccB7I CCANNNNNTGG 2 cut(s) 176, 756
AccI GTMKAC 1 cut(s) 1221
AccIII TCCGGA 1 cut(s) 1174
AciI CCGC 3 cut(s) 141, 666, 1148
AclWI GGATC 2 cut(s) 867, 928
AcsI RAATTY 5 cut(s) 520, 629, 908, 942, 975
AdeI CACNNNGTG 1 cut(s) 1244
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 4 cut(s) 67, 176, 756, 1260
AgsI TTSAA 4 cut(s) 204, 258, 599, 1316
AjnI CCWGG 4 cut(s) 293, 316, 637, 1300
AleI CACNNNNGTG 1 cut(s) 327
AluBI AGCT 7 cut(s) 290, 548, 816, 832, 842, 1023, 1232
AluI AGCT 7 cut(s) 290, 548, 816, 832, 842, 1023, 1232
Alw21I GWGCWC 1 cut(s) 855
Alw26I GTCTC 1 cut(s) 448
Alw44I GTGCAC 1 cut(s) 851
AlwI GGATC 2 cut(s) 867, 928
Aor13HI TCCGGA 1 cut(s) 1174
AoxI GGCC 1 cut(s) 167
ApaLI GTGCAC 1 cut(s) 851
ApeKI GCWGC 5 cut(s) 678, 716, 788, 1229, 1232
ApoI RAATTY 5 cut(s) 520, 629, 908, 942, 975
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
Asp700I GAANNNNTTC 2 cut(s) 247, 745
AspLEI GCGC 3 cut(s) 702, 1291, 1298
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 2 cut(s) 128, 971
AsuHPI GGTGA 3 cut(s) 19, 314, 503
AvaII GGWCC 1 cut(s) 24
BaeGI GKGCMC 2 cut(s) 855, 966
BaeI ACNNNNGTAYC 2 cut(s) 603, 636
BanI GGYRCC 1 cut(s) 1203
BarI GAAGNNNNNNTAC 2 cut(s) 1308, 1340
Bbv12I GWGCWC 1 cut(s) 855
BbvI GCAGC 5 cut(s) 690, 728, 775, 1219, 1241
BccI CCATC 4 cut(s) 182, 257, 353, 871
BciT130I CCWGG 4 cut(s) 295, 318, 639, 1302
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 2 cut(s) 128, 971
BcoDI GTCTC 1 cut(s) 448
BfaI CTAG 2 cut(s) 825, 1032
BfmI CTRYAG 3 cut(s) 354, 537, 811
BfoI RGCGCY 1 cut(s) 1299
BisI GCNGC 6 cut(s) 141, 679, 717, 789, 1230, 1233
BlsI GCNGC 6 cut(s) 142, 680, 718, 790, 1231, 1234
Bme1390I CCNGG 6 cut(s) 128, 295, 318, 639, 971, 1302
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 3 cut(s) 566, 771, 1205
BmrFI CCNGG 6 cut(s) 128, 295, 318, 639, 971, 1302
BmsI GCATC 4 cut(s) 102, 1018, 1097, 1317
BpmI CTGGAG 3 cut(s) 47, 452, 570
BpuMI CCSGG 2 cut(s) 128, 971
BsaJI CCNNGG 3 cut(s) 325, 1115, 1300
BsaWI WCCGGW 1 cut(s) 1174
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 176, 756, 1260
Bse1I ACTGG 6 cut(s) 474, 514, 904, 922, 949, 1217
Bse3DI GCAATG 1 cut(s) 189
BseAI TCCGGA 1 cut(s) 1174
BseBI CCWGG 4 cut(s) 295, 318, 639, 1302
BseDI CCNNGG 3 cut(s) 325, 1115, 1300
BseGI GGATG 4 cut(s) 93, 193, 268, 662
BseLI CCNNNNNNNGG 4 cut(s) 67, 176, 756, 1260
BseMI GCAATG 1 cut(s) 189
BseNI ACTGG 6 cut(s) 474, 514, 904, 922, 949, 1217
BseSI GKGCMC 2 cut(s) 855, 966
BseXI GCAGC 5 cut(s) 690, 728, 775, 1219, 1241
BseYI CCCAGC 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 1203
BsiHKAI GWGCWC 1 cut(s) 855
BsiSI CCGG 3 cut(s) 127, 970, 1175
BslI CCNNNNNNNGG 4 cut(s) 67, 176, 756, 1260
BsmAI GTCTC 1 cut(s) 448
BsmI GAATGC 2 cut(s) 496, 999
BsnI GGCC 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 855, 966
Bsp13I TCCGGA 1 cut(s) 1174
Bsp143I GATC 5 cut(s) 508, 526, 673, 859, 920
BspACI CCGC 3 cut(s) 141, 666, 1148
BspANI GGCC 1 cut(s) 169
BspEI TCCGGA 1 cut(s) 1174
BspLI GGNNCC 3 cut(s) 566, 771, 1205
BspPI GGATC 2 cut(s) 867, 928
BspQI GCTCTTC 1 cut(s) 1311
BspT107I GGYRCC 1 cut(s) 1203
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 6 cut(s) 474, 514, 904, 922, 949, 1217
BssECI CCNNGG 3 cut(s) 325, 1115, 1300
BssMI GATC 5 cut(s) 508, 526, 673, 859, 920
BssNAI GTATAC 1 cut(s) 1222
BssT1I CCWWGG 2 cut(s) 325, 1115
Bst1107I GTATAC 1 cut(s) 1222
Bst2UI CCWGG 4 cut(s) 295, 318, 639, 1302
Bst4CI ACNGT 5 cut(s) 304, 397, 616, 645, 937
Bst6I CTCTTC 3 cut(s) 432, 1274, 1311
BstDEI CTNAG 2 cut(s) 843, 1067
BstEII GGTNACC 1 cut(s) 320
BstF5I GGATG 4 cut(s) 93, 193, 268, 662
BstH2I RGCGCY 1 cut(s) 1299
BstHHI GCGC 3 cut(s) 702, 1291, 1298
BstKTI GATC 5 cut(s) 511, 529, 676, 862, 923
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 5 cut(s) 508, 526, 673, 859, 920
BstMWI GCNNNNNNNGC 4 cut(s) 137, 500, 665, 1295
BstNI CCWGG 4 cut(s) 295, 318, 639, 1302
BstNSI RCATGY 1 cut(s) 135
BstPI GGTNACC 1 cut(s) 320
BstSCI CCNGG 6 cut(s) 126, 293, 316, 637, 969, 1300
BstSFI CTRYAG 3 cut(s) 354, 537, 811
BstSLI GKGCMC 2 cut(s) 855, 966
BstV1I GCAGC 5 cut(s) 690, 728, 775, 1219, 1241
BstX2I RGATCY 1 cut(s) 920
BstXI CCANNNNNNTGG 1 cut(s) 956
BstYI RGATCY 1 cut(s) 920
BstZ17I GTATAC 1 cut(s) 1222
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 93, 193, 268, 662
BtsI GCAGTG 3 cut(s) 120, 783, 1238
BtsIMutI CAGTG 8 cut(s) 120, 393, 467, 521, 783, 915, 942, 1238
CfoI GCGC 3 cut(s) 702, 1291, 1298
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 413
CviAII CATG 5 cut(s) 132, 703, 863, 1133, 1274
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 2 cut(s) 843, 1067
DpnI GATC 5 cut(s) 510, 528, 675, 861, 922
DpnII GATC 5 cut(s) 508, 526, 673, 859, 920
DraIII CACNNNGTG 1 cut(s) 1244
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
Eam1104I CTCTTC 3 cut(s) 432, 1274, 1311
EarI CTCTTC 3 cut(s) 432, 1274, 1311
Eco130I CCWWGG 2 cut(s) 325, 1115
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 24
Eco91I GGTNACC 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 320
EcoRII CCWGG 4 cut(s) 293, 316, 637, 1300
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 325, 1115
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 2 cut(s) 325, 1115
FaeI CATG 5 cut(s) 135, 706, 866, 1136, 1277
FatI CATG 5 cut(s) 131, 702, 862, 1132, 1273
FbaI TGATCA 1 cut(s) 508
FblI GTMKAC 1 cut(s) 1221
Fnu4HI GCNGC 6 cut(s) 141, 679, 717, 789, 1230, 1233
FokI GGATG 4 cut(s) 80, 200, 275, 649
Fsp4HI GCNGC 6 cut(s) 141, 679, 717, 789, 1230, 1233
FspBI CTAG 2 cut(s) 825, 1032
FspI TGCGCA 1 cut(s) 701
GlaI GCGC 3 cut(s) 701, 1290, 1297
GluI GCNGC 6 cut(s) 141, 679, 717, 789, 1230, 1233
GsaI CCCAGC 1 cut(s) 93
GsuI CTGGAG 3 cut(s) 47, 452, 570
HaeII RGCGCY 1 cut(s) 1299
HaeIII GGCC 1 cut(s) 169
HapII CCGG 3 cut(s) 127, 970, 1175
HhaI GCGC 3 cut(s) 702, 1291, 1298
Hin1II CATG 5 cut(s) 135, 706, 866, 1136, 1277
Hin6I GCGC 3 cut(s) 700, 1289, 1296
HinP1I GCGC 3 cut(s) 700, 1289, 1296
HindIII AAGCTT 1 cut(s) 830
HinfI GANTC 7 cut(s) 200, 223, 760, 800, 821, 1156, 1256
HpaII CCGG 3 cut(s) 127, 970, 1175
HphI GGTGA 3 cut(s) 19, 314, 503
Hpy166II GTNNAC 4 cut(s) 27, 413, 853, 1222
Hpy188I TCNGA 5 cut(s) 98, 451, 649, 1093, 1263
Hpy188III TCNNGA 6 cut(s) 64, 431, 825, 905, 1153, 1175
Hpy8I GTNNAC 4 cut(s) 27, 413, 853, 1222
HpyAV CCTTC 3 cut(s) 1072, 1181, 1279
HpyCH4III ACNGT 5 cut(s) 304, 397, 616, 645, 937
HpyCH4V TGCA 7 cut(s) 337, 494, 581, 791, 853, 997, 1235
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 500, 665, 1295
HpyF3I CTNAG 2 cut(s) 843, 1067
Hsp92II CATG 5 cut(s) 135, 706, 866, 1136, 1277
HspAI GCGC 3 cut(s) 700, 1289, 1296
Kpn2I TCCGGA 1 cut(s) 1174
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 5 cut(s) 508, 526, 673, 859, 920
LguI GCTCTTC 1 cut(s) 1311
LmnI GCTCC 3 cut(s) 179, 545, 769
Lsp1109I GCAGC 5 cut(s) 690, 728, 775, 1219, 1241
LweI GCATC 4 cut(s) 102, 1018, 1097, 1317
MaeI CTAG 2 cut(s) 825, 1032
MaeIII GTNAC 3 cut(s) 134, 320, 913
MalI GATC 5 cut(s) 510, 528, 675, 861, 922
MboI GATC 5 cut(s) 508, 526, 673, 859, 920
MboII GAAGA 8 cut(s) 166, 419, 449, 499, 1100, 1103, 1291, 1328
MfeI CAATTG 2 cut(s) 805, 1097
MflI RGATCY 1 cut(s) 920
MhlI GDGCHC 2 cut(s) 855, 966
MlyI GAGTC 2 cut(s) 794, 1250
MmeI TCCRAC 2 cut(s) 157, 920
MnlI CCTC 9 cut(s) 60, 71, 159, 427, 726, 790, 1138, 1188, 1275
Mph1103I ATGCAT 1 cut(s) 496
MroI TCCGGA 1 cut(s) 1174
MroXI GAANNNNTTC 2 cut(s) 247, 745
MseI TTAA 2 cut(s) 633, 834
MslI CAYNNNNRTG 1 cut(s) 327
MspA1I CMGCKG 2 cut(s) 1023, 1232
MspI CCGG 3 cut(s) 127, 970, 1175
MspR9I CCNGG 6 cut(s) 128, 295, 318, 639, 971, 1302
MunI CAATTG 2 cut(s) 805, 1097
Mva1269I GAATGC 2 cut(s) 496, 999
MvaI CCWGG 4 cut(s) 295, 318, 639, 1302
MwoI GCNNNNNNNGC 4 cut(s) 137, 500, 665, 1295
NciI CCSGG 2 cut(s) 128, 971
NdeII GATC 5 cut(s) 508, 526, 673, 859, 920
NlaIII CATG 5 cut(s) 135, 706, 866, 1136, 1277
NlaIV GGNNCC 3 cut(s) 566, 771, 1205
NmuCI GTSAC 2 cut(s) 320, 913
NsbI TGCGCA 1 cut(s) 701
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 1 cut(s) 135
OliI CACNNNNGTG 1 cut(s) 327
PciSI GCTCTTC 1 cut(s) 1311
PctI GAATGC 2 cut(s) 496, 999
PdmI GAANNNNTTC 2 cut(s) 247, 745
PfeI GAWTC 5 cut(s) 200, 223, 760, 821, 1156
PflMI CCANNNNNTGG 2 cut(s) 176, 756
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 6 cut(s) 142, 680, 718, 790, 1231, 1234
PleI GAGTC 2 cut(s) 794, 1250
PpsI GAGTC 2 cut(s) 794, 1250
Psp6I CCWGG 4 cut(s) 293, 316, 637, 1300
PspEI GGTNACC 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 4 cut(s) 293, 316, 637, 1300
PspN4I GGNNCC 3 cut(s) 566, 771, 1205
PspPI GGNCC 1 cut(s) 24
PsuI RGATCY 1 cut(s) 920
PvuII CAGCTG 2 cut(s) 1023, 1232
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 327
SapI GCTCTTC 1 cut(s) 1311
SaqAI TTAA 2 cut(s) 633, 834
SatI GCNGC 6 cut(s) 141, 679, 717, 789, 1230, 1233
Sau3AI GATC 5 cut(s) 508, 526, 673, 859, 920
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 2 cut(s) 794, 1250
ScrFI CCNGG 6 cut(s) 128, 295, 318, 639, 971, 1302
SduI GDGCHC 2 cut(s) 855, 966
SfaNI GCATC 4 cut(s) 102, 1018, 1097, 1317
SfcI CTRYAG 3 cut(s) 354, 537, 811
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 327
SsiI CCGC 3 cut(s) 141, 666, 1148
SspI AATATT 1 cut(s) 246
SspMI CTAG 2 cut(s) 825, 1032
StyD4I CCNGG 6 cut(s) 126, 293, 316, 637, 969, 1300
StyI CCWWGG 2 cut(s) 325, 1115
TaaI ACNGT 5 cut(s) 304, 397, 616, 645, 937
TaqI TCGA 2 cut(s) 84, 904
TaqII GACCGA 2 cut(s) 12, 1268
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 5 cut(s) 200, 223, 760, 821, 1156
Tru1I TTAA 2 cut(s) 633, 834
Tru9I TTAA 2 cut(s) 633, 834
TscAI CASTG 8 cut(s) 120, 400, 474, 521, 790, 922, 942, 1245
TseFI GTSAC 2 cut(s) 320, 913
TseI GCWGC 5 cut(s) 678, 716, 788, 1229, 1232
Tsp45I GTSAC 2 cut(s) 320, 913
TspDTI ATGAA 4 cut(s) 17, 48, 852, 1149
TspGWI ACGGA 1 cut(s) 1342
TspRI CASTG 8 cut(s) 120, 400, 474, 521, 790, 922, 942, 1245
Van91I CCANNNNNTGG 2 cut(s) 176, 756
VneI GTGCAC 1 cut(s) 851
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 5 cut(s) 520, 629, 908, 942, 975
XbaI TCTAGA 1 cut(s) 824
XceI RCATGY 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 956
XmiI GTMKAC 1 cut(s) 1221
XmnI GAANNNNTTC 2 cut(s) 247, 745
XspI CTAG 2 cut(s) 825, 1032
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.