Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006826

Physical Location & Seq

Genomic Coordinates Forward (+)

51033240 .. 51036699

Gene Structure 3460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1410700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCTCATCTGATAAATCTGCTGAGGTCTGTTGATCACCAGTGGAATTCTGATCGGTTTGCTACGGATGGAGCTGGAGTAGATATATGGAACCACAACAGGTCTGCACCAGAGCAGAGTTACCAATGGGGCACAGACACAGTTGTATCTGTTCGATTTAATCCTGGAGAGCCAGATATCTTGGCAACATCTGCAAGCGATCGTAGCATAGCACTATATGACCTGCGCATGGGAAAACCAACATCAAAGTTTATAATGAGGACGAGAACCAATTCCATTTGTTGGAACCCAATGGAGCCAATCAACTTCACTGCTGCAAATGAGGATTCCAACTGTTATAGCTTTGATTGTAGAAAGTTTGGTGAAGCTACGTGTGTTCACATGGATCATGAGGATATTGATTATTCTCCAACTGGTCGAGAATTTGTCACTGGGTCTTATGATAGAACTGCGATGATTTTCCCGTATAATGCTGGTCACAAACGGGAGATATATCATACGAAGAGAATGCAAAGGGTGTTTTGTGTCAAGTACAGCTGCGATGGTAGTTATGTTATTTCCGGGAGTGATGACACTAATCTTAGGCTTTGGAAGTCTAAAGCATCGGAACAATTGGGAGTTCTTCTTCCAAGGGAACAGAAAAAGCATGAGTATCATGAGGCTGTCAAAAACCGCTACAAGCACCTTCCCGAAGTCAAGCGTATTGTGAGGCACAGGCACCTACCAAAACCAATATACAAGGCAGGTAAGCAAATTCGTGAACAAAATGAATCTCAGAGAAAGAAGCACGAGAAGAGGAAGGCCCGCAGTGCCCCAGGAAGCATCGTTCAAGAGCCATTACGTAGAAGAAAAATCATCAAAGTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sof1 WD40

Protein Analysis

290

Amino Acids

33.64

Weight (kDa)

9.51

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	25 - 201	8.7e-22	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	27 - 154	3.7e-07	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	48 - 198	1.3e-08	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	53 - 205	6.2e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	129 - 210	7.2e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	131 - 208	9e-10	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	131 - 205	4.5e-06	WDR3 first beta-propeller domain
WD40	PF00400	172 - 197	6.4e-06	WD domain, G-beta repeat
Sof1	PF04158	199 - 285	3.1e-26	Sof1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28450
fragaria_vesca	FvH4_2g10410 FvH4_2g10410
malus_domestica	MD08G1220200.v1.1 MD15G1410600.v1.1 MD15G1410700.v1.1
prunus_persica	Prupe.1G573700_v2.0.a1 Prupe.1G573700_v2.0.a1 Prupe.3G166600_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1 Prupe.6G177000_v2.0.a1
pyrus_communis	pycom08g19110 pycom15g36550
rosa_chinensis	RchiOBHm_Chr6g0267881
rosa_laevigata	RLG00000013973
rosa_multiflora	Rmu_co8335391.1_g000001 Rmu_sc0000434.1_g000004 Rmu_sc0005400.1_g000008
rosa_roxburghii	Rroxscaffold_7G00200360
rosa_rugosa	Rorug06G0034600
rosa_samantha	Rh6AG156600 Rh6BG157800 Rh6DG143000
rosa_wichuraiana	Rw6G013600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
Acc16I	TGCGCA	1 cut(s)	227
Acc36I	ACCTGC	2 cut(s)	231, 734
AccB1I	GGYRCC	1 cut(s)	717
AccB7I	CCANNNNNTGG	1 cut(s)	282
AciI	CCGC	2 cut(s)	673, 805
AclWI	GGATC	1 cut(s)	393
AcsI	RAATTY	3 cut(s)	46, 422, 753
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	2 cut(s)	229, 282
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	830
AjnI	CCWGG	2 cut(s)	163, 814
AloI	GAACNNNNNNTCC	2 cut(s)	810, 842
AluBI	AGCT	4 cut(s)	74, 342, 368, 537
AluI	AGCT	4 cut(s)	74, 342, 368, 537
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	393
AoxI	GGCC	1 cut(s)	801
ApeKI	GCWGC	2 cut(s)	314, 537
ApoI	RAATTY	3 cut(s)	46, 422, 753
Asp700I	GAANNNNTTC	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	802
AsuC2I	CCSGG	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	29, 374
BaeGI	GKGCMC	2 cut(s)	134, 814
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BanI	GGYRCC	1 cut(s)	717
BauI	CACGAG	1 cut(s)	788
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	301, 524
BccI	CCATC	2 cut(s)	62, 536
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	2 cut(s)	165, 816
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	9
BfuAI	ACCTGC	2 cut(s)	231, 734
BisI	GCNGC	2 cut(s)	315, 538
BlsI	GCNGC	2 cut(s)	316, 539
Bme1390I	CCNGG	3 cut(s)	165, 562, 816
BmgT120I	GGNCC	1 cut(s)	802
BmiI	GGNNCC	4 cut(s)	92, 287, 297, 719
BmrFI	CCNGG	3 cut(s)	165, 562, 816
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	611, 831
BmuI	ACTGGG	1 cut(s)	441
BpmI	CTGGAG	2 cut(s)	96, 186
Bpu10I	CCTNAGC	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	562
BsaAI	YACGTR	2 cut(s)	372, 842
BsaJI	CCNNGG	2 cut(s)	629, 814
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 282
Bse1I	ACTGG	3 cut(s)	40, 418, 436
BseBI	CCWGG	2 cut(s)	165, 816
BseDI	CCNNGG	2 cut(s)	629, 814
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	229, 282
BseMII	CTCAG	2 cut(s)	14, 788
BseNI	ACTGG	3 cut(s)	40, 418, 436
BseSI	GKGCMC	2 cut(s)	134, 814
BseXI	GCAGC	2 cut(s)	301, 524
BsgI	GTGCAG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	803
BshNI	GGYRCC	1 cut(s)	717
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	561
BslI	CCNNNNNNNGG	2 cut(s)	229, 282
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	803
Bsp1286I	GDGCHC	2 cut(s)	134, 814
Bsp143I	GATC	4 cut(s)	34, 52, 199, 385
BspACI	CCGC	2 cut(s)	673, 805
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	2 cut(s)	15, 787
BspHI	TCATGA	2 cut(s)	388, 655
BspLI	GGNNCC	4 cut(s)	92, 287, 297, 719
BspMI	ACCTGC	2 cut(s)	231, 734
BspPI	GGATC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	717
BsrI	ACTGG	3 cut(s)	40, 418, 436
BssECI	CCNNGG	2 cut(s)	629, 814
BssMI	GATC	4 cut(s)	34, 52, 199, 385
BssSI	CACGAG	1 cut(s)	788
BssT1I	CCWWGG	1 cut(s)	629
Bst2BI	CACGAG	1 cut(s)	788
Bst2UI	CCWGG	2 cut(s)	165, 816
Bst4CI	ACNGT	2 cut(s)	142, 335
Bst6I	CTCTTC	2 cut(s)	497, 788
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBAI	YACGTR	2 cut(s)	372, 842
BstC8I	GCNNGC	2 cut(s)	196, 805
BstDEI	CTNAG	3 cut(s)	23, 581, 774
BstF5I	GGATG	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	4 cut(s)	37, 55, 202, 388
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	34, 52, 199, 385
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 204, 809
BstNI	CCWGG	2 cut(s)	165, 816
BstSCI	CCNGG	3 cut(s)	163, 560, 814
BstSLI	GKGCMC	2 cut(s)	134, 814
BstSNI	TACGTA	1 cut(s)	842
BstV1I	GCAGC	2 cut(s)	301, 524
BsuRI	GGCC	1 cut(s)	803
BtgZI	GCGATG	2 cut(s)	467, 555
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	2 cut(s)	309, 814
BtsIMutI	CAGTG	4 cut(s)	47, 309, 429, 814
BveI	ACCTGC	2 cut(s)	231, 734
Cac8I	GCNNGC	2 cut(s)	196, 805
CciI	TCATGA	2 cut(s)	388, 655
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	802
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	5 cut(s)	229, 382, 389, 647, 656
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	3 cut(s)	23, 581, 774
DpnI	GATC	4 cut(s)	36, 54, 201, 387
DpnII	GATC	4 cut(s)	34, 52, 199, 385
Eam1104I	CTCTTC	2 cut(s)	497, 788
EarI	CTCTTC	2 cut(s)	497, 788
Eco105I	TACGTA	1 cut(s)	842
Eco130I	CCWWGG	1 cut(s)	629
Eco32I	GATATC	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	163, 814
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	629
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	5 cut(s)	232, 385, 392, 650, 659
FatI	CATG	5 cut(s)	228, 381, 388, 646, 655
FauI	CCCGC	1 cut(s)	812
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	315, 538
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	315, 538
FspI	TGCGCA	1 cut(s)	227
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	2 cut(s)	315, 538
GsuI	CTGGAG	2 cut(s)	96, 186
HaeIII	GGCC	1 cut(s)	803
HapII	CCGG	1 cut(s)	561
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	232, 385, 392, 650, 659
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	326, 770
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	2 cut(s)	29, 374
Hpy166II	GTNNAC	2 cut(s)	379, 761
Hpy188I	TCNGA	4 cut(s)	12, 52, 607, 777
Hpy188III	TCNNGA	6 cut(s)	389, 419, 656, 689, 758, 830
Hpy8I	GTNNAC	2 cut(s)	379, 761
HpyAV	CCTTC	2 cut(s)	695, 793
HpyCH4III	ACNGT	2 cut(s)	142, 335
HpyCH4IV	ACGT	2 cut(s)	371, 841
HpyCH4V	TGCA	4 cut(s)	107, 194, 317, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 204, 809
HpyF3I	CTNAG	3 cut(s)	23, 581, 774
HpySE526I	ACGT	2 cut(s)	371, 841
Hsp92II	CATG	5 cut(s)	232, 385, 392, 650, 659
HspAI	GCGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	34, 52, 199, 385
LmnI	GCTCC	2 cut(s)	71, 295
Lsp1109I	GCAGC	2 cut(s)	301, 524
LweI	GCATC	2 cut(s)	611, 831
MaeII	ACGT	2 cut(s)	371, 841
MaeIII	GTNAC	3 cut(s)	119, 427, 476
MalI	GATC	4 cut(s)	36, 54, 201, 387
MboI	GATC	4 cut(s)	34, 52, 199, 385
MboII	GAAGA	5 cut(s)	514, 614, 617, 805, 858
MfeI	CAATTG	1 cut(s)	611
MhlI	GDGCHC	2 cut(s)	134, 814
MluCI	AATT	5 cut(s)	46, 271, 422, 611, 753
MmeI	TCCRAC	3 cut(s)	263, 354, 434
MnlI	CCTC	7 cut(s)	18, 252, 316, 385, 652, 702, 789
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	537
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	3 cut(s)	165, 562, 816
MunI	CAATTG	1 cut(s)	611
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	2 cut(s)	165, 816
MwoI	GCNNNNNNNGC	3 cut(s)	191, 204, 809
NciI	CCSGG	1 cut(s)	562
NdeII	GATC	4 cut(s)	34, 52, 199, 385
NlaIII	CATG	5 cut(s)	232, 385, 392, 650, 659
NlaIV	GGNNCC	4 cut(s)	92, 287, 297, 719
NmuCI	GTSAC	2 cut(s)	427, 476
NsbI	TGCGCA	1 cut(s)	227
PagI	TCATGA	2 cut(s)	388, 655
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	326, 770
PflMI	CCANNNNNTGG	1 cut(s)	282
PfoI	TCCNGGA	2 cut(s)	163, 560
PkrI	GCNGC	2 cut(s)	316, 539
Ple19I	CGATCG	1 cut(s)	202
Ppu21I	YACGTR	2 cut(s)	372, 842
PsiI	TTATAA	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	163, 814
PspGI	CCWGG	2 cut(s)	163, 814
PspN4I	GGNNCC	4 cut(s)	92, 287, 297, 719
PspPI	GGNCC	1 cut(s)	802
PvuI	CGATCG	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	537
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	315, 538
Sau3AI	GATC	4 cut(s)	34, 52, 199, 385
Sau96I	GGNCC	1 cut(s)	802
ScrFI	CCNGG	3 cut(s)	165, 562, 816
SduI	GDGCHC	2 cut(s)	134, 814
SfaNI	GCATC	2 cut(s)	611, 831
SnaBI	TACGTA	1 cut(s)	842
Sse9I	AATT	5 cut(s)	46, 271, 422, 611, 753
SsiI	CCGC	2 cut(s)	673, 805
StyD4I	CCNGG	3 cut(s)	163, 560, 814
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	2 cut(s)	142, 335
TaiI	ACGT	2 cut(s)	374, 844
TaqI	TCGA	3 cut(s)	154, 418, 864
TasI	AATT	5 cut(s)	46, 271, 422, 611, 753
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	2 cut(s)	326, 770
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	4 cut(s)	47, 316, 436, 814
TseFI	GTSAC	2 cut(s)	427, 476
TseI	GCWGC	2 cut(s)	314, 537
Tsp45I	GTSAC	2 cut(s)	427, 476
TspDTI	ATGAA	1 cut(s)	783
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	4 cut(s)	47, 316, 436, 814
Van91I	CCANNNNNTGG	1 cut(s)	282
XapI	RAATTY	3 cut(s)	46, 422, 753
XmnI	GAANNNNTTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.