Rh6AG156600

DDB1- and CUL4-associated factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
24367692 .. 24373566
5875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG156600.1

Sequence Viewer

Length: 1134 bp
ATGAACCACTTGGTAGGAATATTCTCCGGTTCAATGGATGGAGATATTCGGCATTGGGATATAGCTTCCAGGCGCACAGTTCATCAGTTTCCTGGCCACCAAGGTGCTGTGCGAGGTTTAGCAGTCTCTACAGATGGACGTGTTCTTGTCTCTTGTGGAACTGATTGCAGTGTCAGGCTCTGGGCCGTACCTATTTCTACTGCGATGGAGCTAGATGTCTCATCTGACAAGTCTGTTGAGCCGCTAGAAACTTATGTTTGGAAGAATGCATTTCGGTCTGTTGATCACCAATGGAATTTTGATCGCTTTGCCACAGGTGGAGCTGGTGTAGACATATGGAACCACAACAGGTCTGCACCGGAACAGAGTTTGGAATGGGGAACAGACACAGTTATATCTGTCCGGTTTAATCCTGGACAGCCTGATCTTTTGGCAACATCCGCAAGTGATCGCAGCATAGCACTATATGACTTACGCATGGGGAAACCAACAGCGAAGCTTATCATGGCGACAAAAACCAATTCTATTTGTTGGAACCCAATGGAGCCATTCAACTTCACTGCTGCAAATGAGGACTGCAATTGCTATAGCTTTGATTCTAGAAAGCTTAATGCAGCAACGTGTGTGCACAAAGATCATGTTTCTGCTGTGATGGATATAGATTATTCTCCAACTGGTAGAGAATTTGTAACTGGGTCTTATGATAGAACAGTGAGAATTTTCCAGTATAATGGTGGTCACAGCCGGGAGATTTATCATACAAAGAGAATGCAAAGGGTGTTTTGCGTCAAGTTCAGCTGTGATGCTAGTTATGTTATTTCTGGGAGTGATGACACGAATCTTAGGCTTTGGAAGGCTAAAGCATCAGAACAGTTGGGAGTTCTTCTTCCAAGGGAAAAGAAAAGGCATGAATATCATGAAGCTGTCAAGAATCGCTACAAGCACCTCCCTGAAGTCAAGCGTATAGTGAGGCACAGGCACTTGCCAAAACCAATATACAAGGCAACTGGTCTCCGGCGTACTATGATCGAAGCCGAGCGAAGGAGAGAAGAGAAGAGGAAAGCTCACAGTGCCCCAGGAACCATTACATCAAAGCCATTACGGCAAACAAGAATTGTCCGTGTTGAGGAGTGA

Protein Analysis

377

Amino Acids

42.92

Weight (kDa)

9.39

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 7 - 63 8.7e-08 THOC3 beta-propeller domain
WDR55 PF24796 7 - 63 3.6e-06 WDR55
Beta-prop_WDR3_1st PF25173 7 - 79 5.3e-12 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 7 - 181 3.7e-08 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 7 - 64 2.9e-09 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 7 - 68 1.4e-06 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 7 - 67 2.8e-12 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 7 - 62 3.3e-10 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 8 - 62 1e-06 TEP-1 second beta-propeller
Beta-prop_DCAF4 PF23761 9 - 63 1.4e-06 DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_Prp19 PF24814 9 - 137 8.9e-10 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 15 - 68 1.1e-08 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 26 - 61 6.2e-09 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 92 - 181 3.9e-11 THOC3 beta-propeller domain
WD40_Prp19 PF24814 106 - 235 1.7e-08 Prp19 WD40 domain
Beta-prop_EML PF23409 109 - 298 1.8e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz PF24807 110 - 244 1.7e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 128 - 300 2.1e-20 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 137 - 292 1e-14 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 144 - 297 3.5e-10 G protein beta WD-40 repeat protein
WDR55 PF24796 170 - 289 2.3e-08 WDR55
Beta-prop_THOC3 PF25174 170 - 293 6.2e-15 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 187 - 292 2e-10 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 190 - 292 3e-07 WDHD1 first WD40 domain
WD40 PF00400 208 - 241 2.4e-06 WD domain, G-beta repeat
WD40_Prp19 PF24814 210 - 291 1.3e-07 Prp19 WD40 domain
Sof1 PF04158 286 - 371 3.5e-30 Sof1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 330
AciI CCGC 2 cut(s) 242, 441
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 3 cut(s) 295, 683, 717
AcuI CTGAAG 1 cut(s) 972
AfaI GTAC 2 cut(s) 189, 1021
AfiI CCNNNNNNNGG 2 cut(s) 1041, 1126
AflIII ACRYGT 2 cut(s) 139, 620
AgsI TTSAA 2 cut(s) 33, 553
AjiI CACGTC 1 cut(s) 140
AjnI CCWGG 4 cut(s) 68, 91, 412, 1075
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 9 cut(s) 65, 211, 323, 499, 591, 607, 798, 923, 1064
AluI AGCT 9 cut(s) 65, 211, 323, 499, 591, 607, 798, 923, 1064
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 4 cut(s) 130, 154, 223, 1016
Alw44I GTGCAC 1 cut(s) 626
AlwNI CAGNNNCTG 1 cut(s) 180
AoxI GGCC 2 cut(s) 94, 183
ApaLI GTGCAC 1 cut(s) 626
ApeKI GCWGC 3 cut(s) 453, 563, 614
ApoI RAATTY 3 cut(s) 295, 683, 717
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 746
AsuHPI GGTGA 1 cut(s) 278
BaeGI GKGCMC 2 cut(s) 630, 1075
BalI TGGCCA 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 3 cut(s) 465, 550, 626
BccI CCATC 4 cut(s) 32, 128, 199, 646
BceAI ACGGC 2 cut(s) 170, 1118
BciT130I CCWGG 4 cut(s) 70, 93, 414, 1077
BclI TGATCA 1 cut(s) 283
BcnI CCSGG 1 cut(s) 746
BcoDI GTCTC 4 cut(s) 130, 154, 223, 1016
BfaI CTAG 4 cut(s) 212, 245, 600, 807
BfmI CTRYAG 2 cut(s) 129, 586
BglI GCCNNNNNGGC 1 cut(s) 1102
BisI GCNGC 4 cut(s) 242, 454, 564, 615
BlsI GCNGC 4 cut(s) 243, 455, 565, 616
Bme1390I CCNGG 5 cut(s) 70, 93, 414, 746, 1077
BmgBI CACGTC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 4 cut(s) 341, 536, 546, 1081
BmrFI CCNGG 5 cut(s) 70, 93, 414, 746, 1077
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 2 cut(s) 793, 872
BmuI ACTGGG 1 cut(s) 702
BplI GAGNNNNNCTC 2 cut(s) 1048, 1080
BpuMI CCSGG 1 cut(s) 746
BsaI GGTCTC 1 cut(s) 1016
BsaJI CCNNGG 3 cut(s) 100, 890, 1075
BsaWI WCCGGW 3 cut(s) 26, 358, 402
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 1041, 1126
Bse1I ACTGG 4 cut(s) 679, 697, 724, 1012
BseBI CCWGG 4 cut(s) 70, 93, 414, 1077
BseDI CCNNGG 3 cut(s) 100, 890, 1075
BseGI GGATG 2 cut(s) 43, 437
BseLI CCNNNNNNNGG 2 cut(s) 1041, 1126
BseNI ACTGG 4 cut(s) 679, 697, 724, 1012
BseSI GKGCMC 2 cut(s) 630, 1075
BseXI GCAGC 3 cut(s) 465, 550, 626
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 2 cut(s) 96, 185
BsiHKAI GWGCWC 1 cut(s) 630
BsiSI CCGG 5 cut(s) 27, 359, 403, 745, 1015
BslI CCNNNNNNNGG 2 cut(s) 1041, 1126
BsmAI GTCTC 4 cut(s) 130, 154, 223, 1016
BsmI GAATGC 2 cut(s) 271, 774
BsnI GGCC 2 cut(s) 96, 185
Bso31I GGTCTC 1 cut(s) 1016
Bsp1286I GDGCHC 2 cut(s) 630, 1075
Bsp143I GATC 6 cut(s) 283, 301, 424, 448, 634, 1026
BspACI CCGC 2 cut(s) 242, 441
BspANI GGCC 2 cut(s) 96, 185
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 4 cut(s) 341, 536, 546, 1081
BspTNI GGTCTC 1 cut(s) 1016
BsrI ACTGG 4 cut(s) 679, 697, 724, 1012
BssECI CCNNGG 3 cut(s) 100, 890, 1075
BssMI GATC 6 cut(s) 283, 301, 424, 448, 634, 1026
BssT1I CCWWGG 2 cut(s) 100, 890
Bst2UI CCWGG 4 cut(s) 70, 93, 414, 1077
Bst4CI ACNGT 5 cut(s) 79, 391, 712, 873, 1070
Bst6I CTCTTC 2 cut(s) 1044, 1049
BstDEI CTNAG 1 cut(s) 842
BstF5I GGATG 2 cut(s) 43, 437
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 6 cut(s) 286, 304, 427, 451, 637, 1029
BstMAI GTCTC 4 cut(s) 130, 154, 223, 1016
BstMBI GATC 6 cut(s) 283, 301, 424, 448, 634, 1026
BstMWI GCNNNNNNNGC 3 cut(s) 440, 1070, 1102
BstNI CCWGG 4 cut(s) 70, 93, 414, 1077
BstSCI CCNGG 5 cut(s) 68, 91, 412, 744, 1075
BstSFI CTRYAG 2 cut(s) 129, 586
BstSLI GKGCMC 2 cut(s) 630, 1075
BstV1I GCAGC 3 cut(s) 465, 550, 626
BstXI CCANNNNNNTGG 1 cut(s) 731
BsuRI GGCC 2 cut(s) 96, 185
BtgZI GCGATG 1 cut(s) 218
BtrI CACGTC 1 cut(s) 140
BtsCI GGATG 2 cut(s) 43, 437
BtsI GCAGTG 2 cut(s) 175, 558
BtsIMutI CAGTG 4 cut(s) 175, 558, 717, 1075
CaiI CAGNNNCTG 1 cut(s) 180
CciI TCATGA 1 cut(s) 916
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 1 cut(s) 775
Csp6I GTAC 2 cut(s) 188, 1020
CviAII CATG 5 cut(s) 478, 505, 638, 908, 917
CviQI GTAC 2 cut(s) 188, 1020
DdeI CTNAG 1 cut(s) 842
DpnI GATC 6 cut(s) 285, 303, 426, 450, 636, 1028
DpnII GATC 6 cut(s) 283, 301, 424, 448, 634, 1026
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 1044, 1049
EarI CTCTTC 2 cut(s) 1044, 1049
Eco130I CCWWGG 2 cut(s) 100, 890
Eco31I GGTCTC 1 cut(s) 1016
Eco57I CTGAAG 1 cut(s) 972
EcoRII CCWGG 4 cut(s) 68, 91, 412, 1075
EcoT14I CCWWGG 2 cut(s) 100, 890
EcoT22I ATGCAT 1 cut(s) 271
ErhI CCWWGG 2 cut(s) 100, 890
FaeI CATG 5 cut(s) 481, 508, 641, 911, 920
FatI CATG 5 cut(s) 477, 504, 637, 907, 916
FauNDI CATATG 1 cut(s) 335
FbaI TGATCA 1 cut(s) 283
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 4 cut(s) 242, 454, 564, 615
FokI GGATG 2 cut(s) 50, 424
Fsp4HI GCNGC 4 cut(s) 242, 454, 564, 615
FspBI CTAG 4 cut(s) 212, 245, 600, 807
GlaI GCGC 1 cut(s) 74
GluI GCNGC 4 cut(s) 242, 454, 564, 615
HaeIII GGCC 2 cut(s) 96, 185
HapII CCGG 5 cut(s) 27, 359, 403, 745, 1015
HgaI GACGC 1 cut(s) 775
HhaI GCGC 1 cut(s) 75
Hin1II CATG 5 cut(s) 481, 508, 641, 911, 920
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HindIII AAGCTT 2 cut(s) 497, 605
HinfI GANTC 3 cut(s) 596, 838, 931
HpaII CCGG 5 cut(s) 27, 359, 403, 745, 1015
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 331, 628
Hpy188I TCNGA 2 cut(s) 226, 868
Hpy188III TCNNGA 3 cut(s) 600, 917, 928
Hpy8I GTNNAC 2 cut(s) 331, 628
HpyAV CCTTC 2 cut(s) 847, 1035
HpyCH4III ACNGT 5 cut(s) 79, 391, 712, 873, 1070
HpyCH4IV ACGT 2 cut(s) 139, 620
HpyCH4V TGCA 8 cut(s) 168, 269, 356, 566, 579, 614, 628, 772
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 1070, 1102
HpyF3I CTNAG 1 cut(s) 842
HpySE526I ACGT 2 cut(s) 139, 620
Hsp92II CATG 5 cut(s) 481, 508, 641, 911, 920
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 6 cut(s) 283, 301, 424, 448, 634, 1026
LmnI GCTCC 3 cut(s) 208, 320, 544
Lsp1109I GCAGC 3 cut(s) 465, 550, 626
LweI GCATC 2 cut(s) 793, 872
MaeI CTAG 4 cut(s) 212, 245, 600, 807
MaeII ACGT 2 cut(s) 139, 620
MaeIII GTNAC 2 cut(s) 688, 737
MalI GATC 6 cut(s) 285, 303, 426, 450, 636, 1028
MboI GATC 6 cut(s) 283, 301, 424, 448, 634, 1026
MboII GAAGA 5 cut(s) 274, 875, 878, 1061, 1066
MfeI CAATTG 1 cut(s) 580
MhlI GDGCHC 2 cut(s) 630, 1075
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 6 cut(s) 295, 520, 580, 683, 717, 1113
MluNI TGGCCA 1 cut(s) 96
MmeI TCCRAC 2 cut(s) 512, 695
MnlI CCTC 6 cut(s) 107, 565, 956, 963, 1050, 1120
Mox20I TGGCCA 1 cut(s) 96
Mph1103I ATGCAT 1 cut(s) 271
MscI TGGCCA 1 cut(s) 96
MseI TTAA 2 cut(s) 408, 609
MslI CAYNNNNRTG 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 798
MspI CCGG 5 cut(s) 27, 359, 403, 745, 1015
MspR9I CCNGG 5 cut(s) 70, 93, 414, 746, 1077
MunI CAATTG 1 cut(s) 580
Mva1269I GAATGC 2 cut(s) 271, 774
MvaI CCWGG 4 cut(s) 70, 93, 414, 1077
MwoI GCNNNNNNNGC 3 cut(s) 440, 1070, 1102
NciI CCSGG 1 cut(s) 746
NdeI CATATG 1 cut(s) 335
NdeII GATC 6 cut(s) 283, 301, 424, 448, 634, 1026
NlaIII CATG 5 cut(s) 481, 508, 641, 911, 920
NlaIV GGNNCC 4 cut(s) 341, 536, 546, 1081
NmeAIII GCCGAG 1 cut(s) 1060
NmuCI GTSAC 1 cut(s) 737
NsiI ATGCAT 1 cut(s) 271
OliI CACNNNNGTG 1 cut(s) 102
PagI TCATGA 1 cut(s) 916
PctI GAATGC 2 cut(s) 271, 774
PfeI GAWTC 3 cut(s) 596, 838, 931
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 4 cut(s) 243, 455, 565, 616
Psp6I CCWGG 4 cut(s) 68, 91, 412, 1075
PspGI CCWGG 4 cut(s) 68, 91, 412, 1075
PspN4I GGNNCC 4 cut(s) 341, 536, 546, 1081
PspPI GGNCC 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 798
RsaI GTAC 2 cut(s) 189, 1021
RsaNI GTAC 2 cut(s) 188, 1020
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 2 cut(s) 408, 609
SatI GCNGC 4 cut(s) 242, 454, 564, 615
Sau3AI GATC 6 cut(s) 283, 301, 424, 448, 634, 1026
Sau96I GGNCC 1 cut(s) 183
ScrFI CCNGG 5 cut(s) 70, 93, 414, 746, 1077
SduI GDGCHC 2 cut(s) 630, 1075
SfaNI GCATC 2 cut(s) 793, 872
SfcI CTRYAG 2 cut(s) 129, 586
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 6 cut(s) 295, 520, 580, 683, 717, 1113
SsiI CCGC 2 cut(s) 242, 441
SspI AATATT 1 cut(s) 21
SspMI CTAG 4 cut(s) 212, 245, 600, 807
StyD4I CCNGG 5 cut(s) 68, 91, 412, 744, 1075
StyI CCWWGG 2 cut(s) 100, 890
TaaI ACNGT 5 cut(s) 79, 391, 712, 873, 1070
TaiI ACGT 2 cut(s) 142, 623
TaqI TCGA 1 cut(s) 1029
TaqII GACCGA 1 cut(s) 264
TasI AATT 6 cut(s) 295, 520, 580, 683, 717, 1113
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 3 cut(s) 596, 838, 931
Tru1I TTAA 2 cut(s) 408, 609
Tru9I TTAA 2 cut(s) 408, 609
TscAI CASTG 4 cut(s) 175, 565, 717, 1075
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 3 cut(s) 453, 563, 614
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 4 cut(s) 17, 71, 924, 933
TspGWI ACGGA 1 cut(s) 1109
TspRI CASTG 4 cut(s) 175, 565, 717, 1075
VneI GTGCAC 1 cut(s) 626
XapI RAATTY 3 cut(s) 295, 683, 717
XbaI TCTAGA 1 cut(s) 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 731
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 4 cut(s) 212, 245, 600, 807
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.