Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007888

Physical Location & Seq

Genomic Coordinates Forward (+)

53393130 .. 53405157

Gene Structure 12028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1433800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3060 bp

ATGGCTCCGAAGAAAAAGCAGACTACGACGAAGCAAAGCAGCAGCAGCAAGGCTAAAACAGCGTCGTCGGCACCGAGGCTCCAGATTTCGGCCGATAACGAGAACCGGGTCCGCCGGCTCCTGCTCAACTCGGGGAGGTCCACCGCCCCGGCGGCTCCGGTCGACGAGTCTCTTTCCAAGGCTCAGAAGACGAAGAAGCTCAAAGCCGTGTACGAGAAGCTTTCCTGCGAAGGCTTCACGAACGATCAAATCGAACTCGCTCTTTCTGCTCTCAAGGAGGGTGCTACATTTGAGAATGCAGTGGACTGGTTGTGCTTAAATTTGACTAGTAATGAGCTGCCGCTGAAGTTTTCTACCGGAACTTCTTTGCACACCAGTGAAGGTGGTTCTGTTGGTGTCATATTGACTTCTCGGGATGACTGGACTCCCTCGGTAGATACACATGCCAAGATTGATGAGGATGCACCGAGAATTGCTGTTAGAACCAAGGGACATCGGGATGATAAGACTCTTGATTCGTTTCAGCCATCTCAGGCAGATTGGATCAAACGATATGTCGAGCAACAAGAAGAGGATGAGTCCACAACTTGGGAGGATGATGCCGATGAGGCTTTGGCTGAGAAGGCTCTTAAACCAAGGTCTTACGATCTTATTGCCAAAGATTATCATGCTGCACGATTGGAAGCTGCAAAAGCCAAGCAAAACCGGGACAAGAAAAGCCAGGAACGGGCAGGCAGCATCATCCGCAATCTCAAGCAAGAGTTATCTGCTCTAGGGTTATCAGACGACATATTGGCATCAGAATTTGCAAAGGAACAAGGTTCTGCTCCTTCTGAGGACACATATGATAGTCCTTGCAATCAGTGTGAAGGAGTCTATGCTGATGATTTAATAGTTGACGAAAGTAATACAGAGCACAGCGGCTCTATTCATTCTCCAGTCAATTCTACTCCAAGTGTACCTGTCCAAGGAAAGATTGTTGCAGAAGAAGAGTCAACAGATGTGGAGATTGGTAATTTCTTCTTAGAAGATGGGCCATCTGCAGATGTTCCACCTCCTGAAATTTTGGAACTACAGAAGAAAGAAAGGATGAGAGAAATGTCTAGTGAGAAAAATCTGGAGAAATTAGATGGTATTTGGAAGAAGGGGGACTCTCGAAAGATTCCCAAGGCTATTCTTCATCAGTTATGTCAAAGATCCGGATGGGAAGCTCCAAAGTTTAATAAAATGAATGGAAAGCAAAATAATCTCTCTTATACTGTCAGCGTTTTGCGTAAAGCCAGTGGGAGAGGTAAAAGCAGAAAGGCTGGGGGCTTGGTCACCCTTCAGCTTCCTGATCAGCATGTAACTTTTGATTCAACTGAGGATGCACAAAATGGAGTGGCAGCATTTGCTCTTTGTCAACTGTTTCCTGATCTCCCAGTTCACCTATTAATTATTGAGCCTTATGCTTCTCTAGTCATTCAATGGATGGAAGGGGAATCATCAACGAATGTGGAAGATAGTGAGGAAGATCGAAGAGCTACTTTTGTGGACTCACTTTTGAGAGTTGATGGTTCTGCTTCAACTTCTGCTGCTAATGTTACGAATGATATTGTTCCAGAAAAGGCTCAAGAACTCCATGTTGAACAACCTATAAGCGCAGGTGTTGCTCATGTTGATTTAGCAGCTCAAAGAGTACATCGTCTCAAGGAAGTGGAGAGCACTTATTTGAGACAAGAACTGGAGAATAAAGTGAAAAATCCAAAATTCAAGGACATGTTGAAAACTAGAGCTGCACTTCCCATTGCTGGTTTGAAGGGTGATATACTGCAACTGCTGAGTGAGAATAATGTTCTAGTTGTTTGTGGTGAAACAGGTTCTGGAAAAACAACCCAGGTTCCGCAATTCATATTGGATGACATGATCAAATCGGGACATGGTGGATATTGTAACATTATATGCACACAACCAAGGAGAATAGCGGCTATCTCTGTGGCTGAAAGAGTTTCTGATGAGCGCTGTGAACCTTCACCTGGTTCAAAAGGTTCTTTGGTTGGTTATCAAGTTCGTCTCGATAGTGCAAGCAATGACAAGACTAAGCTTCTCTTTTGTACGACGGGCATTCTTCTGAGAAAATTTGTGGGGGATAAAAACTTGACAGGAGTTACTCATGTCATAGTTGATGAAGTACATGAGCGGTCTCTTTTGGGTGATTTCCTGCTCATAGTGTTGAAGAATCTGATTGAGAAGCAATCAGCTCTTAACACACCAAAACTGAAGGTTATTCTGATGTCTGCAACTGTTGATTCAAATTTGTTTTCGAGATACTTTGGTAATTGCCCAGTGATTACTGCAGAAGGCAGAACACATCCTGTCACAACATACTATCTTGAGGATATATACGAAAGCATAGATTATCAGATTGCTTCAGACTCTCCAGCTTCCATGAGATATGGAGCTTTGACCAAAGAAAAGGCTGGTCCTGTAAACAACCGCAGGGGAAAGAAGAATCTTGTTTTATCTGGTTGGGGTGATGATTCTCTGCTCTCTGAAGAAACTATAAATCCGTATTATGTACCAGATAGTTATCAATCGTACAAAGAGAAAACTCGACAAAACTTGCAAAGAGTGAATGAAGATGTCATTGATTATGATCTTCTTGAAGACTTGGTGTGCCATGTTGATGAAACTTGCAGTGAGGGAGCCATACTTGTCTTCTTGCCTGGAGTATCTGAAATTTACACTTTAGTTGATAAGCTATCTGCTTCGTATCGATTTGGTGGACCAGCTTCTGATTGGATTCTTCCACTACATTCTTCCGTTGCATCAACTGATCAAAAGAAGGTGTTTTTACGGGCTCCTGAGAACATACGGAAGGCATGTTTTCCACTTAATTTCTTCTCTCTTTTTGCTCTTTATTTATTGTTTTACCCTTTTATTATGGTCATTGTAGCTACAAACATTGCAGAGACCAGCATAACAATAGATGATGTGGTATATGTTATAGACTGTGGAAAGCATAAGGAGAATCGTTATAATCCACAAAAGGTTTGTTGTTTTAACGTTTTTAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016282 GO:0032991 GO:0043021 GO:0043024 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0070993 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

1020

Amino Acids

112.8

Weight (kDa)

5.43

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_DHX29	PF24899	66 - 118	2.6e-17	ATP-dependent RNA helicase DHX29, UBA domain
DEAD	PF00270	605 - 765	8.9e-11	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58050 AT1G58060
fragaria_vesca	FvH4_5g21580 FvH4_5g21580 FvH4_5g21580
malus_domestica	MD15G1433800.v1.1 MD15G1433900.v1.1
prunus_persica	Prupe.1G577400_v2.0.a1 Prupe.1G577400_v2.0.a1 Prupe.1G577400_v2.0.a1
pyrus_communis	pycom15g38290
rosa_chinensis	RchiOBHm_Chr7g0209021
rosa_laevigata	RLG00000003172
rosa_multiflora	Rmu_co8235625.1_g000001 Rmu_sc0002829.1_g000011 Rmu_ssc0000190.1_g000013
rosa_roxburghii	Rroxscaffold_3G00249850
rosa_rugosa	Rorug07G0108300 Rorug07G0108300
rosa_samantha	Rh7AG242900 Rh7BG237800 Rh7CG258000 Rh7DG249900
rosa_wichuraiana	Rw7G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3018
AarI	CACCTGC	1 cut(s)	1634
Acc36I	ACCTGC	1 cut(s)	1634
AccB1I	GGYRCC	1 cut(s)	70
AccB7I	CCANNNNNTGG	1 cut(s)	588
AccBSI	CCGCTC	1 cut(s)	2179
AccI	GTMKAC	1 cut(s)	162
AccIII	TCCGGA	1 cut(s)	1199
AclI	AACGTT	1 cut(s)	3045
AclWI	GGATC	2 cut(s)	551, 1191
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	7 cut(s)	319, 803, 1062, 1748, 2117, 2293, 2718
AcuI	CTGAAG	5 cut(s)	365, 1310, 2279, 2394, 2553
AfaI	GTAC	7 cut(s)	212, 960, 1680, 2095, 2172, 2559, 2579
AfeI	AGCGCT	1 cut(s)	2000
AfiI	CCNNNNNNNGG	6 cut(s)	88, 588, 727, 968, 1790, 2015
AflIII	ACRYGT	1 cut(s)	1758
AhlI	ACTAGT	1 cut(s)	326
AjnI	CCWGG	4 cut(s)	720, 1875, 2014, 2704
AleI	CACNNNNGTG	1 cut(s)	375
Alw21I	GWGCWC	2 cut(s)	918, 1706
Alw26I	GTCTC	6 cut(s)	174, 1691, 1708, 2057, 2187, 2945
AlwI	GGATC	2 cut(s)	551, 1191
AlwNI	CAGNNNCTG	2 cut(s)	1862, 2774
Ama87I	CYCGRG	2 cut(s)	130, 411
Aor13HI	TCCGGA	1 cut(s)	1199
Aor51HI	AGCGCT	1 cut(s)	2000
AoxI	GGCC	2 cut(s)	90, 1034
ApoI	RAATTY	7 cut(s)	319, 803, 1062, 1748, 2117, 2293, 2718
ArsI	GACNNNNNNTTYG	4 cut(s)	499, 531, 540, 572
AseI	ATTAAT	1 cut(s)	1433
AspLEI	GCGC	2 cut(s)	1643, 2001
AspS9I	GGNCC	5 cut(s)	109, 138, 1034, 2462, 2765
AsuC2I	CCSGG	3 cut(s)	107, 149, 707
AsuHPI	GGTGA	7 cut(s)	1312, 1418, 1814, 1862, 2004, 2204, 2525
AvaI	CYCGRG	2 cut(s)	130, 411
AvaII	GGWCC	4 cut(s)	109, 138, 2462, 2765
BaeI	ACNNNNGTAYC	2 cut(s)	2299, 2332
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	2842
BbsI	GAAGAC	3 cut(s)	194, 2652, 2689
Bbv12I	GWGCWC	2 cut(s)	918, 1706
BccI	CCATC	7 cut(s)	535, 1025, 1045, 1124, 1197, 1465, 1547
BceAI	ACGGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	4 cut(s)	722, 1877, 2016, 2706
BclI	TGATCA	3 cut(s)	1336, 1905, 2815
BcnI	CCSGG	3 cut(s)	107, 149, 707
BcoDI	GTCTC	6 cut(s)	174, 1691, 1708, 2057, 2187, 2945
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	6 cut(s)	327, 773, 1104, 1457, 1770, 1838
BfmI	CTRYAG	3 cut(s)	1041, 1073, 2334
BfoI	RGCGCY	1 cut(s)	2002
BfuAI	ACCTGC	1 cut(s)	1634
BglI	GCCNNNNNGGC	2 cut(s)	152, 608
Bme1390I	CCNGG	7 cut(s)	107, 149, 707, 722, 1877, 2016, 2706
Bme18I	GGWCC	4 cut(s)	109, 138, 2462, 2765
BmeT110I	CYCGRG	2 cut(s)	130, 411
BmgT120I	GGNCC	5 cut(s)	109, 138, 1034, 2462, 2765
BmiI	GGNNCC	9 cut(s)	6, 72, 80, 110, 119, 156, 1881, 2686, 2841
BmrFI	CCNGG	7 cut(s)	107, 149, 707, 722, 1877, 2016, 2706
BmrI	ACTGGG	2 cut(s)	1415, 2318
BmsI	GCATC	6 cut(s)	451, 589, 747, 806, 1357, 2816
BmuI	ACTGGG	2 cut(s)	1415, 2318
BpiI	GAAGAC	3 cut(s)	194, 2652, 2689
BpmI	CTGGAG	6 cut(s)	65, 921, 1139, 1745, 2403, 2727
BpuEI	CTTGAG	5 cut(s)	257, 737, 1596, 1673, 2393
BpuMI	CCSGG	3 cut(s)	107, 149, 707
Bsa29I	ATCGAT	1 cut(s)	2755
BsaBI	GATNNNNATC	2 cut(s)	2568, 2634
BsaI	GGTCTC	2 cut(s)	2187, 2945
BsaWI	WCCGGW	3 cut(s)	157, 356, 1199
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	6 cut(s)	88, 588, 727, 968, 1790, 2015
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	8 cut(s)	311, 375, 425, 938, 1281, 1421, 1728, 2324
Bse3DI	GCAATG	3 cut(s)	1785, 2074, 2943
Bse8I	GATNNNNATC	2 cut(s)	2568, 2634
BseAI	TCCGGA	1 cut(s)	1199
BseBI	CCWGG	4 cut(s)	722, 1877, 2016, 2706
BseCI	ATCGAT	1 cut(s)	2755
BseJI	GATNNNNATC	2 cut(s)	2568, 2634
BseLI	CCNNNNNNNGG	6 cut(s)	88, 588, 727, 968, 1790, 2015
BseMI	GCAATG	3 cut(s)	1785, 2074, 2943
BseMII	CTCAG	8 cut(s)	197, 545, 609, 825, 1353, 1811, 2102, 2835
BseNI	ACTGG	8 cut(s)	311, 375, 425, 938, 1281, 1421, 1728, 2324
BseX3I	CGGCCG	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	1307
BsgI	GTGCAG	2 cut(s)	657, 1761
Bsh1285I	CGRYCG	2 cut(s)	93, 162
BshFI	GGCC	2 cut(s)	92, 1036
BshNI	GGYRCC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	2755
BsiEI	CGRYCG	2 cut(s)	93, 162
BsiHKAI	GWGCWC	2 cut(s)	918, 1706
BsiHKCI	CYCGRG	2 cut(s)	130, 411
BsiSI	CCGG	7 cut(s)	106, 115, 149, 158, 357, 706, 1200
BslFI	GGGAC	4 cut(s)	504, 722, 1163, 1929
BslI	CCNNNNNNNGG	6 cut(s)	88, 588, 727, 968, 1790, 2015
BsmAI	GTCTC	6 cut(s)	174, 1691, 1708, 2057, 2187, 2945
BsmBI	CGTCTC	2 cut(s)	1691, 2057
BsmFI	GGGAC	4 cut(s)	504, 722, 1163, 1929
BsmI	GAATGC	2 cut(s)	301, 2103
BsnI	GGCC	2 cut(s)	92, 1036
Bso31I	GGTCTC	2 cut(s)	2187, 2945
BsoBI	CYCGRG	2 cut(s)	130, 411
Bsp1286I	GDGCHC	3 cut(s)	918, 1706, 2842
Bsp13I	TCCGGA	1 cut(s)	1199
BspANI	GGCC	2 cut(s)	92, 1036
BspCNI	CTCAG	8 cut(s)	196, 544, 610, 826, 1354, 1812, 2103, 2836
BspDI	ATCGAT	1 cut(s)	2755
BspEI	TCCGGA	1 cut(s)	1199
BspLI	GGNNCC	9 cut(s)	6, 72, 80, 110, 119, 156, 1881, 2686, 2841
BspMAI	CTGCAG	2 cut(s)	1045, 2338
BspMI	ACCTGC	1 cut(s)	1634
BspPI	GGATC	2 cut(s)	551, 1191
BspQI	GCTCTTC	1 cut(s)	1513
BspT107I	GGYRCC	1 cut(s)	70
BspTNI	GGTCTC	2 cut(s)	2187, 2945
BsrBI	CCGCTC	1 cut(s)	2179
BsrDI	GCAATG	3 cut(s)	1785, 2074, 2943
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	8 cut(s)	311, 375, 425, 938, 1281, 1421, 1728, 2324
BssAI	RCCGGY	1 cut(s)	114
BssT1I	CCWWGG	6 cut(s)	177, 486, 635, 967, 1167, 1952
Bst2UI	CCWGG	4 cut(s)	722, 1877, 2016, 2706
Bst4CI	ACNGT	4 cut(s)	1261, 1407, 2284, 2993
Bst6I	CTCTTC	3 cut(s)	564, 984, 1513
BstAPI	GCANNNNNTGC	2 cut(s)	1391, 1649
BstC8I	GCNNGC	3 cut(s)	116, 733, 2065
BstEII	GGTNACC	1 cut(s)	1318
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstH2I	RGCGCY	1 cut(s)	2002
BstHHI	GCGC	2 cut(s)	1643, 2001
BstMAI	GTCTC	6 cut(s)	174, 1691, 1708, 2057, 2187, 2945
BstMCI	CGRYCG	2 cut(s)	93, 162
BstNI	CCWGG	4 cut(s)	722, 1877, 2016, 2706
BstNSI	RCATGY	4 cut(s)	446, 1346, 1762, 2865
BstPI	GGTNACC	1 cut(s)	1318
BstSCI	CCNGG	7 cut(s)	105, 147, 705, 720, 1875, 2014, 2704
BstSFI	CTRYAG	3 cut(s)	1041, 1073, 2334
BstV2I	GAAGAC	3 cut(s)	194, 2652, 2689
BstX2I	RGATCY	1 cut(s)	1196
BstYI	RGATCY	1 cut(s)	1196
BstZI	CGGCCG	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	2755
BsuRI	GGCC	2 cut(s)	92, 1036
BsuTUI	ATCGAT	1 cut(s)	2755
BtsI	GCAGTG	2 cut(s)	306, 2683
BtsIMutI	CAGTG	6 cut(s)	306, 382, 869, 1288, 2331, 2683
BveI	ACCTGC	1 cut(s)	1634
Cac8I	GCNNGC	3 cut(s)	116, 733, 2065
CaiI	CAGNNNCTG	2 cut(s)	1862, 2774
CfoI	GCGC	2 cut(s)	1643, 2001
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	5 cut(s)	109, 138, 1034, 2462, 2765
ClaI	ATCGAT	1 cut(s)	2755
CseI	GACGC	1 cut(s)	51
CsiI	ACCWGGT	1 cut(s)	2014
Csp6I	GTAC	7 cut(s)	211, 959, 1679, 2094, 2171, 2558, 2578
CspCI	CAANNNNNGTGG	4 cut(s)	984, 1019, 1476, 1511
CviQI	GTAC	7 cut(s)	211, 959, 1679, 2094, 2171, 2558, 2578
EaeI	YGGCCR	1 cut(s)	90
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	3 cut(s)	564, 984, 1513
EarI	CTCTTC	3 cut(s)	564, 984, 1513
EciI	GGCGGA	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	90
Eco130I	CCWWGG	6 cut(s)	177, 486, 635, 967, 1167, 1952
Eco24I	GRGCYC	1 cut(s)	2842
Eco31I	GGTCTC	2 cut(s)	2187, 2945
Eco47I	GGWCC	4 cut(s)	109, 138, 2462, 2765
Eco47III	AGCGCT	1 cut(s)	2000
Eco52I	CGGCCG	1 cut(s)	90
Eco57I	CTGAAG	5 cut(s)	365, 1310, 2279, 2394, 2553
Eco88I	CYCGRG	2 cut(s)	130, 411
Eco91I	GGTNACC	1 cut(s)	1318
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoO65I	GGTNACC	1 cut(s)	1318
EcoRII	CCWGG	4 cut(s)	720, 1875, 2014, 2704
EcoT14I	CCWWGG	6 cut(s)	177, 486, 635, 967, 1167, 1952
EcoT38I	GRGCYC	1 cut(s)	2842
ErhI	CCWWGG	6 cut(s)	177, 486, 635, 967, 1167, 1952
Esp3I	CGTCTC	2 cut(s)	1691, 2057
FalI	AAGNNNNNCTT	4 cut(s)	1510, 1542, 2072, 2104
FaqI	GGGAC	4 cut(s)	504, 722, 1163, 1929
FauNDI	CATATG	1 cut(s)	844
FbaI	TGATCA	3 cut(s)	1336, 1905, 2815
FblI	GTMKAC	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	2842
FspBI	CTAG	6 cut(s)	327, 773, 1104, 1457, 1770, 1838
GlaI	GCGC	2 cut(s)	1642, 2000
GsaI	CCCAGC	1 cut(s)	1311
GsuI	CTGGAG	6 cut(s)	65, 921, 1139, 1745, 2403, 2727
HaeII	RGCGCY	1 cut(s)	2002
HaeIII	GGCC	2 cut(s)	92, 1036
HapII	CCGG	7 cut(s)	106, 115, 149, 158, 357, 706, 1200
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	2 cut(s)	1643, 2001
Hin6I	GCGC	2 cut(s)	1641, 1999
HinP1I	GCGC	2 cut(s)	1641, 1999
HincII	GTYRAC	4 cut(s)	163, 898, 996, 1403
HindII	GTYRAC	4 cut(s)	163, 898, 996, 1403
HindIII	AAGCTT	2 cut(s)	218, 2081
HpaII	CCGG	7 cut(s)	106, 115, 149, 158, 357, 706, 1200
HphI	GGTGA	7 cut(s)	1312, 1418, 1814, 1862, 2004, 2204, 2525
Hpy99I	CGWCG	5 cut(s)	31, 67, 70, 167, 2101
HpyCH4III	ACNGT	4 cut(s)	1261, 1407, 2284, 2993
HpyCH4IV	ACGT	1 cut(s)	3045
HpySE526I	ACGT	1 cut(s)	3045
HspAI	GCGC	2 cut(s)	1641, 1999
Kpn2I	TCCGGA	1 cut(s)	1199
KroI	GCCGGC	1 cut(s)	114
KroNI	GCCGGC	1 cut(s)	116
Ksp22I	TGATCA	3 cut(s)	1336, 1905, 2815
LguI	GCTCTTC	1 cut(s)	1513
LmnI	GCTCC	9 cut(s)	10, 84, 123, 160, 832, 1216, 2438, 2684, 2845
LweI	GCATC	6 cut(s)	451, 589, 747, 806, 1357, 2816
MabI	ACCWGGT	1 cut(s)	2014
MaeI	CTAG	6 cut(s)	327, 773, 1104, 1457, 1770, 1838
MaeII	ACGT	1 cut(s)	3045
MaeIII	GTNAC	6 cut(s)	1318, 1345, 1582, 1931, 2146, 2356
MbiI	CCGCTC	1 cut(s)	2179
MflI	RGATCY	1 cut(s)	1196
MhlI	GDGCHC	3 cut(s)	918, 1706, 2842
MlyI	GAGTC	9 cut(s)	176, 418, 502, 587, 882, 1001, 1145, 1529, 2408
MroI	TCCGGA	1 cut(s)	1199
MroNI	GCCGGC	1 cut(s)	114
MseI	TTAA	9 cut(s)	317, 630, 890, 1221, 1433, 2244, 2874, 3042, 3051
MslI	CAYNNNNRTG	3 cut(s)	375, 498, 2664
MspA1I	CMGCKG	2 cut(s)	343, 921
MspI	CCGG	7 cut(s)	106, 115, 149, 158, 357, 706, 1200
MspR9I	CCNGG	7 cut(s)	107, 149, 707, 722, 1877, 2016, 2706
Mva1269I	GAATGC	2 cut(s)	301, 2103
MvaI	CCWGG	4 cut(s)	722, 1877, 2016, 2706
NaeI	GCCGGC	1 cut(s)	116
NciI	CCSGG	3 cut(s)	107, 149, 707
NdeI	CATATG	1 cut(s)	844
NgoMIV	GCCGGC	1 cut(s)	114
NlaIV	GGNNCC	9 cut(s)	6, 72, 80, 110, 119, 156, 1881, 2686, 2841
NmuCI	GTSAC	2 cut(s)	1318, 2356
NspI	RCATGY	4 cut(s)	446, 1346, 1762, 2865
OliI	CACNNNNGTG	1 cut(s)	375
PaqCI	CACCTGC	1 cut(s)	1634
PciI	ACATGT	1 cut(s)	1758
PciSI	GCTCTTC	1 cut(s)	1513
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 249
PctI	GAATGC	2 cut(s)	301, 2103
PdiI	GCCGGC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	588
PleI	GAGTC	9 cut(s)	175, 418, 502, 586, 881, 1000, 1145, 1529, 2408
PpsI	GAGTC	9 cut(s)	175, 418, 502, 586, 881, 1000, 1145, 1529, 2408
PscI	ACATGT	1 cut(s)	1758
PshBI	ATTAAT	1 cut(s)	1433
PsiI	TTATAA	1 cut(s)	3018
Psp1406I	AACGTT	1 cut(s)	3045
Psp6I	CCWGG	4 cut(s)	720, 1875, 2014, 2704
PspEI	GGTNACC	1 cut(s)	1318
PspFI	CCCAGC	1 cut(s)	1307
PspGI	CCWGG	4 cut(s)	720, 1875, 2014, 2704
PspN4I	GGNNCC	9 cut(s)	6, 72, 80, 110, 119, 156, 1881, 2686, 2841
PspPI	GGNCC	5 cut(s)	109, 138, 1034, 2462, 2765
PstI	CTGCAG	2 cut(s)	1045, 2338
PstNI	CAGNNNCTG	2 cut(s)	1862, 2774
PsuI	RGATCY	1 cut(s)	1196
RsaI	GTAC	7 cut(s)	212, 960, 1680, 2095, 2172, 2559, 2579
RsaNI	GTAC	7 cut(s)	211, 959, 1679, 2094, 2171, 2558, 2578
RseI	CAYNNNNRTG	3 cut(s)	375, 498, 2664
SalI	GTCGAC	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	1513
SaqAI	TTAA	9 cut(s)	317, 630, 890, 1221, 1433, 2244, 2874, 3042, 3051
Sau96I	GGNCC	5 cut(s)	109, 138, 1034, 2462, 2765
SchI	GAGTC	9 cut(s)	176, 418, 502, 587, 882, 1001, 1145, 1529, 2408
ScrFI	CCNGG	7 cut(s)	107, 149, 707, 722, 1877, 2016, 2706
SduI	GDGCHC	3 cut(s)	918, 1706, 2842
SexAI	ACCWGGT	1 cut(s)	2014
SfaNI	GCATC	6 cut(s)	451, 589, 747, 806, 1357, 2816
SfcI	CTRYAG	3 cut(s)	1041, 1073, 2334
SinI	GGWCC	4 cut(s)	109, 138, 2462, 2765
SmiMI	CAYNNNNRTG	3 cut(s)	375, 498, 2664
SmlI	CTYRAG	5 cut(s)	272, 752, 1611, 1688, 2372
SmoI	CTYRAG	5 cut(s)	272, 752, 1611, 1688, 2372
SpeI	ACTAGT	1 cut(s)	326
SspMI	CTAG	6 cut(s)	327, 773, 1104, 1457, 1770, 1838
StyD4I	CCNGG	7 cut(s)	105, 147, 705, 720, 1875, 2014, 2704
StyI	CCWWGG	6 cut(s)	177, 486, 635, 967, 1167, 1952
TaaI	ACNGT	4 cut(s)	1261, 1407, 2284, 2993
TaiI	ACGT	1 cut(s)	3048
TaqI	TCGA	9 cut(s)	162, 252, 558, 1156, 1516, 2055, 2303, 2593, 2755
TatI	WGTACW	2 cut(s)	1678, 2170
TauI	GCSGC	4 cut(s)	155, 343, 924, 1967
Tru1I	TTAA	9 cut(s)	317, 630, 890, 1221, 1433, 2244, 2874, 3042, 3051
Tru9I	TTAA	9 cut(s)	317, 630, 890, 1221, 1433, 2244, 2874, 3042, 3051
TscAI	CASTG	6 cut(s)	306, 382, 869, 1288, 2331, 2683
TseFI	GTSAC	2 cut(s)	1318, 2356
Tsp45I	GTSAC	2 cut(s)	1318, 2356
TspDTI	ATGAA	7 cut(s)	920, 1169, 1244, 1879, 2181, 2631, 2682
TspGWI	ACGGA	3 cut(s)	2538, 2791, 2869
TspRI	CASTG	6 cut(s)	306, 382, 869, 1288, 2331, 2683
Van91I	CCANNNNNTGG	1 cut(s)	588
VpaK11BI	GGWCC	4 cut(s)	109, 138, 2462, 2765
VspI	ATTAAT	1 cut(s)	1433
XagI	CCTNNNNNAGG	1 cut(s)	966
XapI	RAATTY	7 cut(s)	319, 803, 1062, 1748, 2117, 2293, 2718
XceI	RCATGY	4 cut(s)	446, 1346, 1762, 2865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2775
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	6 cut(s)	327, 773, 1104, 1457, 1770, 1838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.