Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8235625.1

Orthogroup ID

OG0007888

Physical Location & Seq

Genomic Coordinates Forward (+)

69 .. 678

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8235625.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggctccaaagaagaagcagccgcagcagcagcccaagaatcccagcagtaaaccccaaccggcctcgtctggccagaagccccagcccaacaccgccaaaccccaaacgacgtcctccggccccaggctccagatttccgccgagaacgagaaccgcctccgccgcctcctcctcaactccggccgttccgccgcggtccccgtcgacgagtcgctctccaaggctcagaaggccaagaagctcagggccgtgtacgagcagctctcctgcgaaggcttcaccaatgatcagattgaactcgctctctccgccgtcaaggagggggctacatatgaggctgctctggactggttgtgcttaaatgtgcctgggaatgagctcccactcaagttttcgagtggtgtttcgatggctgcaaatgaaggtacatttgaactcattgtgttgtttgtgtatacagtggattatgttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016282 GO:0032991 GO:0043021 GO:0043024 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0070993 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

159

Amino Acids

17.27

Weight (kDa)

9.1

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58050 AT1G58060
fragaria_vesca	FvH4_5g21580 FvH4_5g21580 FvH4_5g21580
malus_domestica	MD15G1433800.v1.1 MD15G1433900.v1.1
prunus_persica	Prupe.1G577400_v2.0.a1 Prupe.1G577400_v2.0.a1 Prupe.1G577400_v2.0.a1
pyrus_communis	pycom15g38290
rosa_chinensis	RchiOBHm_Chr7g0209021
rosa_laevigata	RLG00000003172
rosa_multiflora	Rmu_co8235625.1_g000001 Rmu_sc0002829.1_g000011 Rmu_ssc0000190.1_g000013
rosa_roxburghii	Rroxscaffold_3G00249850
rosa_rugosa	Rorug07G0108300 Rorug07G0108300
rosa_samantha	Rh7AG242900 Rh7BG237800 Rh7CG258000 Rh7DG249900
rosa_wichuraiana	Rw7G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	116
AccI	GTMKAC	2 cut(s)	207, 458
AccII	CGCG	1 cut(s)	197
AcoI	YGGCCR	2 cut(s)	73, 184
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	2 cut(s)	257, 430
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	299, 437
AjnI	CCWGG	2 cut(s)	125, 370
AluBI	AGCT	3 cut(s)	244, 265, 382
AluI	AGCT	3 cut(s)	244, 265, 382
Alw21I	GWGCWC	1 cut(s)	384
AoxI	GGCC	6 cut(s)	63, 73, 121, 184, 234, 249
ApeKI	GCWGC	7 cut(s)	19, 25, 28, 31, 262, 341, 416
AspS9I	GGNCC	3 cut(s)	122, 199, 249
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	7 cut(s)	31, 37, 40, 43, 274, 328, 403
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	3 cut(s)	171, 236, 299
BciT130I	CCWGG	2 cut(s)	127, 372
BclI	TGATCA	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	127, 372
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	122, 199, 249
BmiI	GGNNCC	4 cut(s)	6, 124, 131, 201
BmrFI	CCNGG	2 cut(s)	127, 372
BplI	GAGNNNNNCTC	4 cut(s)	203, 235, 251, 283
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	4 cut(s)	125, 195, 222, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	356
BseBI	CCWGG	2 cut(s)	127, 372
BseDI	CCNNGG	4 cut(s)	125, 195, 222, 371
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	242, 259
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	2 cut(s)	161, 164
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	7 cut(s)	31, 37, 40, 43, 274, 328, 403
BseYI	CCCAGC	2 cut(s)	44, 84
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	6 cut(s)	65, 75, 123, 186, 236, 251
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	3 cut(s)	62, 120, 183
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	6 cut(s)	65, 75, 123, 186, 236, 251
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	289
BspANI	GGCC	6 cut(s)	65, 75, 123, 186, 236, 251
BspCNI	CTCAG	2 cut(s)	241, 258
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	4 cut(s)	6, 124, 131, 201
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	4 cut(s)	125, 195, 222, 371
BssMI	GATC	1 cut(s)	289
BssNAI	GTATAC	1 cut(s)	459
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	222
Bst1107I	GTATAC	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	127, 372
Bst4CI	ACNGT	1 cut(s)	463
BstACI	GRCGYC	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	228, 245
BstDSI	CCRYGG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 28, 31, 165, 233, 311
BstNI	CCWGG	2 cut(s)	127, 372
BstSCI	CCNGG	2 cut(s)	125, 370
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	7 cut(s)	31, 37, 40, 43, 274, 328, 403
BstZ17I	GTATAC	1 cut(s)	459
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	6 cut(s)	65, 75, 123, 186, 236, 251
BtgI	CCRYGG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	468
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	3 cut(s)	122, 199, 249
Cfr42I	CCGCGG	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	256, 429
CviQI	GTAC	2 cut(s)	256, 429
DdeI	CTNAG	2 cut(s)	228, 245
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	73, 184
EagI	CGGCCG	1 cut(s)	184
EciI	GGCGGA	4 cut(s)	130, 152, 181, 301
Ecl136II	GAGCTC	1 cut(s)	382
EclXI	CGGCCG	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	199
Eco52I	CGGCCG	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	125, 370
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	222
FaiI	YATR	4 cut(s)	334, 336, 459, 471
FaqI	GGGAC	1 cut(s)	185
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	2 cut(s)	207, 458
FriOI	GRGCYC	1 cut(s)	384
GsaI	CCCAGC	2 cut(s)	48, 88
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	6 cut(s)	65, 75, 123, 186, 236, 251
HapII	CCGG	3 cut(s)	62, 120, 183
Hin1I	GRCGYC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	40, 212
HpaII	CCGG	3 cut(s)	62, 120, 183
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	4 cut(s)	53, 208, 256, 459
Hpy188I	TCNGA	2 cut(s)	231, 294
Hpy188III	TCNNGA	2 cut(s)	133, 347
Hpy8I	GTNNAC	4 cut(s)	53, 208, 256, 459
Hpy99I	CGWCG	3 cut(s)	115, 209, 212
HpyAV	CCTTC	3 cut(s)	226, 269, 419
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 28, 31, 165, 233, 311
HpyF3I	CTNAG	2 cut(s)	228, 245
HpySE526I	ACGT	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	289
KspI	CCGCGG	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	3 cut(s)	10, 135, 387
Lsp1109I	GCAGC	7 cut(s)	31, 37, 40, 43, 274, 328, 403
MaeII	ACGT	1 cut(s)	113
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	384
MlsI	TGGCCA	1 cut(s)	75
MluNI	TGGCCA	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	8 cut(s)	76, 127, 170, 179, 182, 185, 316, 331
Mox20I	TGGCCA	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	2 cut(s)	362, 478
Msp20I	TGGCCA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	3 cut(s)	62, 120, 183
MspR9I	CCNGG	2 cut(s)	127, 372
MvaI	CCWGG	2 cut(s)	127, 372
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	6 cut(s)	25, 28, 31, 165, 233, 311
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	1 cut(s)	289
NlaIV	GGNNCC	4 cut(s)	6, 124, 131, 201
NmeAIII	GCCGAG	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	125, 370
PspFI	CCCAGC	2 cut(s)	44, 84
PspGI	CCWGG	2 cut(s)	125, 370
PspN4I	GGNNCC	4 cut(s)	6, 124, 131, 201
PspPI	GGNCC	3 cut(s)	122, 199, 249
RsaI	GTAC	2 cut(s)	257, 430
RsaNI	GTAC	2 cut(s)	256, 429
SacI	GAGCTC	1 cut(s)	384
SacII	CCGCGG	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	362, 478
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	3 cut(s)	122, 199, 249
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	127, 372
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	5 cut(s)	116, 246, 267, 384, 430
Sfr303I	CCGCGG	1 cut(s)	198
SgrBI	CCGCGG	1 cut(s)	198
SgrDI	CGTCGACG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	125, 370
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	207, 398, 410
TauI	GCSGC	3 cut(s)	25, 168, 197
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	362, 478
Tru9I	TTAA	2 cut(s)	362, 478
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	7 cut(s)	19, 25, 28, 31, 262, 341, 416
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	199
XmiI	GTMKAC	2 cut(s)	207, 458
ZraI	GACGTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.