ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G58050 AT1G58060 |
| fragaria_vesca | FvH4_5g21580 FvH4_5g21580 FvH4_5g21580 |
| malus_domestica | MD15G1433800.v1.1 MD15G1433900.v1.1 |
| prunus_persica | Prupe.1G577400_v2.0.a1 Prupe.1G577400_v2.0.a1 Prupe.1G577400_v2.0.a1 |
| pyrus_communis | pycom15g38290 |
| rosa_chinensis | RchiOBHm_Chr7g0209021 |
| rosa_laevigata | RLG00000003172 |
| rosa_multiflora | Rmu_co8235625.1_g000001 Rmu_sc0002829.1_g000011 Rmu_ssc0000190.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00249850 |
| rosa_rugosa | Rorug07G0108300 Rorug07G0108300 |
| rosa_samantha | Rh7AG242900 Rh7BG237800 Rh7CG258000 Rh7DG249900 |
| rosa_wichuraiana | Rw7G020580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2949, 3530 |
| AarI | CACCTGC | 1 cut(s) | 1631 |
| AatII | GACGTC | 1 cut(s) | 62 |
| Acc36I | ACCTGC | 2 cut(s) | 1631, 3812 |
| Acc65I | GGTACC | 1 cut(s) | 3993 |
| AccB1I | GGYRCC | 4 cut(s) | 67, 3993, 4091, 4153 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 585 |
| AccBSI | CCGCTC | 1 cut(s) | 2176 |
| AccI | GTMKAC | 1 cut(s) | 3062 |
| AccIII | TCCGGA | 2 cut(s) | 1196, 3106 |
| AclWI | GGATC | 2 cut(s) | 548, 1188 |
| AcoI | YGGCCR | 1 cut(s) | 87 |
| AcuI | CTGAAG | 8 cut(s) | 362, 885, 1307, 2276, 2391, 2550, 3885, 4232 |
| AcyI | GRCGYC | 4 cut(s) | 59, 393, 4092, 4154 |
| AfaI | GTAC | 9 cut(s) | 209, 957, 1677, 2092, 2169, 2556, 2576, 3635, 3995 |
| AfeI | AGCGCT | 1 cut(s) | 1997 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 85, 585, 724, 965, 1787, 2012, 4018 |
| AflIII | ACRYGT | 3 cut(s) | 1755, 3031, 3065 |
| AhlI | ACTAGT | 1 cut(s) | 323 |
| AjiI | CACGTC | 1 cut(s) | 3032 |
| AjnI | CCWGG | 6 cut(s) | 717, 1872, 2011, 2646, 2701, 3040 |
| AleI | CACNNNNGTG | 1 cut(s) | 372 |
| Alw21I | GWGCWC | 3 cut(s) | 915, 1703, 3259 |
| Alw26I | GTCTC | 9 cut(s) | 171, 531, 1688, 1705, 2054, 2184, 2876, 3427, 3639 |
| AlwI | GGATC | 2 cut(s) | 548, 1188 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1859, 2771 |
| Ama87I | CYCGRG | 2 cut(s) | 127, 408 |
| Aor13HI | TCCGGA | 2 cut(s) | 1196, 3106 |
| Aor51HI | AGCGCT | 1 cut(s) | 1997 |
| AoxI | GGCC | 4 cut(s) | 87, 1031, 3092, 4301 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 496, 528, 537, 569 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3561 |
| Asp718I | GGTACC | 1 cut(s) | 3993 |
| AspLEI | GCGC | 3 cut(s) | 1998, 4094, 4156 |
| AspS9I | GGNCC | 7 cut(s) | 106, 135, 1031, 2459, 2762, 3485, 4302 |
| AsuC2I | CCSGG | 3 cut(s) | 104, 146, 704 |
| AsuHPI | GGTGA | 7 cut(s) | 1309, 1415, 1811, 1859, 2001, 2201, 2522 |
| AsuII | TTCGAA | 1 cut(s) | 3118 |
| AsuNHI | GCTAGC | 1 cut(s) | 3673 |
| AvaI | CYCGRG | 2 cut(s) | 127, 408 |
| AvaII | GGWCC | 5 cut(s) | 106, 135, 2459, 2762, 3485 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2296, 2329, 4041, 4074 |
| BanI | GGYRCC | 4 cut(s) | 67, 3993, 4091, 4153 |
| BanII | GRGCYC | 2 cut(s) | 2839, 3690 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3936, 3968 |
| BbsI | GAAGAC | 5 cut(s) | 191, 2649, 2686, 4000, 4302 |
| Bbv12I | GWGCWC | 3 cut(s) | 915, 1703, 3259 |
| BceAI | ACGGC | 3 cut(s) | 188, 3029, 4167 |
| BciT130I | CCWGG | 6 cut(s) | 719, 1874, 2013, 2648, 2703, 3042 |
| BciVI | GTATCC | 2 cut(s) | 427, 3648 |
| BclI | TGATCA | 3 cut(s) | 1333, 1902, 2812 |
| BcnI | CCSGG | 3 cut(s) | 104, 146, 704 |
| BcoDI | GTCTC | 9 cut(s) | 171, 531, 1688, 1705, 2054, 2184, 2876, 3427, 3639 |
| BcuI | ACTAGT | 1 cut(s) | 323 |
| BfmI | CTRYAG | 4 cut(s) | 1038, 1070, 2331, 4053 |
| BfoI | RGCGCY | 3 cut(s) | 1999, 4095, 4157 |
| BfuAI | ACCTGC | 2 cut(s) | 1631, 3812 |
| BfuI | GTATCC | 2 cut(s) | 427, 3648 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 149, 605 |
| Bme1390I | CCNGG | 9 cut(s) | 104, 146, 704, 719, 1874, 2013, 2648, 2703, 3042 |
| Bme18I | GGWCC | 5 cut(s) | 106, 135, 2459, 2762, 3485 |
| BmeT110I | CYCGRG | 2 cut(s) | 127, 408 |
| BmgBI | CACGTC | 1 cut(s) | 3032 |
| BmgT120I | GGNCC | 7 cut(s) | 106, 135, 1031, 2459, 2762, 3485, 4302 |
| BmrFI | CCNGG | 9 cut(s) | 104, 146, 704, 719, 1874, 2013, 2648, 2703, 3042 |
| BmrI | ACTGGG | 2 cut(s) | 1412, 2315 |
| BmtI | GCTAGC | 1 cut(s) | 3677 |
| BmuI | ACTGGG | 2 cut(s) | 1412, 2315 |
| BpiI | GAAGAC | 5 cut(s) | 191, 2649, 2686, 4000, 4302 |
| BpmI | CTGGAG | 6 cut(s) | 62, 918, 1581, 1742, 2400, 2724 |
| Bpu14I | TTCGAA | 1 cut(s) | 3118 |
| BpuEI | CTTGAG | 7 cut(s) | 254, 734, 1593, 1670, 2390, 3415, 3637 |
| BpuMI | CCSGG | 3 cut(s) | 104, 146, 704 |
| Bsa29I | ATCGAT | 2 cut(s) | 2752, 3073 |
| BsaAI | YACGTR | 1 cut(s) | 3569 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2565 |
| BsaHI | GRCGYC | 4 cut(s) | 59, 393, 4092, 4154 |
| BsaI | GGTCTC | 2 cut(s) | 2184, 2876 |
| BsaWI | WCCGGW | 4 cut(s) | 154, 1196, 2557, 3106 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 60, 90 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 85, 585, 724, 965, 1787, 2012, 4018 |
| Bse118I | RCCGGY | 2 cut(s) | 111, 3896 |
| Bse1I | ACTGG | 8 cut(s) | 308, 358, 422, 935, 1418, 1725, 2321, 3475 |
| Bse3DI | GCAATG | 4 cut(s) | 1782, 2071, 2874, 3858 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2565 |
| BseAI | TCCGGA | 2 cut(s) | 1196, 3106 |
| BseBI | CCWGG | 6 cut(s) | 719, 1874, 2013, 2648, 2703, 3042 |
| BseCI | ATCGAT | 2 cut(s) | 2752, 3073 |
| BseJI | GATNNNNATC | 1 cut(s) | 2565 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 85, 585, 724, 965, 1787, 2012, 4018 |
| BseMI | GCAATG | 4 cut(s) | 1782, 2071, 2874, 3858 |
| BseMII | CTCAG | 8 cut(s) | 194, 542, 606, 822, 1808, 2099, 2832, 3889 |
| BseNI | ACTGG | 8 cut(s) | 308, 358, 422, 935, 1418, 1725, 2321, 3475 |
| BseRI | GAGGAG | 2 cut(s) | 176, 3273 |
| BseX3I | CGGCCG | 1 cut(s) | 87 |
| BseYI | CCCAGC | 1 cut(s) | 1304 |
| BsgI | GTGCAG | 6 cut(s) | 350, 654, 750, 1659, 1758, 3840 |
| Bsh1285I | CGRYCG | 2 cut(s) | 90, 159 |
| BshFI | GGCC | 4 cut(s) | 89, 1033, 3094, 4303 |
| BshNI | GGYRCC | 4 cut(s) | 67, 3993, 4091, 4153 |
| BshVI | ATCGAT | 2 cut(s) | 2752, 3073 |
| BsiEI | CGRYCG | 2 cut(s) | 90, 159 |
| BsiHKAI | GWGCWC | 3 cut(s) | 915, 1703, 3259 |
| BsiHKCI | CYCGRG | 2 cut(s) | 127, 408 |
| BsiSI | CCGG | 9 cut(s) | 103, 112, 146, 155, 703, 1197, 2558, 3107, 3897 |
| BslFI | GGGAC | 6 cut(s) | 501, 719, 1160, 1926, 3679, 4131 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 85, 585, 724, 965, 1787, 2012, 4018 |
| BsmAI | GTCTC | 9 cut(s) | 171, 531, 1688, 1705, 2054, 2184, 2876, 3427, 3639 |
| BsmBI | CGTCTC | 3 cut(s) | 531, 1688, 2054 |
| BsmFI | GGGAC | 6 cut(s) | 501, 719, 1160, 1926, 3679, 4131 |
| BsmI | GAATGC | 5 cut(s) | 298, 2100, 3126, 3389, 3544 |
| BsnI | GGCC | 4 cut(s) | 89, 1033, 3094, 4303 |
| Bso31I | GGTCTC | 2 cut(s) | 2184, 2876 |
| BsoBI | CYCGRG | 2 cut(s) | 127, 408 |
| Bsp119I | TTCGAA | 1 cut(s) | 3118 |
| Bsp1286I | GDGCHC | 5 cut(s) | 915, 1703, 2839, 3259, 3690 |
| Bsp13I | TCCGGA | 2 cut(s) | 1196, 3106 |
| Bsp1407I | TGTACA | 1 cut(s) | 3633 |
| Bsp143I | GATC | 9 cut(s) | 241, 540, 643, 1193, 1333, 1411, 1510, 1902, 2812 |
| BspANI | GGCC | 4 cut(s) | 89, 1033, 3094, 4303 |
| BspCNI | CTCAG | 8 cut(s) | 193, 541, 607, 823, 1809, 2100, 2833, 3888 |
| BspDI | ATCGAT | 2 cut(s) | 2752, 3073 |
| BspEI | TCCGGA | 2 cut(s) | 1196, 3106 |
| BspMAI | CTGCAG | 2 cut(s) | 1042, 2335 |
| BspMI | ACCTGC | 2 cut(s) | 1631, 3812 |
| BspOI | GCTAGC | 1 cut(s) | 3677 |
| BspPI | GGATC | 2 cut(s) | 548, 1188 |
| BspQI | GCTCTTC | 2 cut(s) | 1510, 3016 |
| BspT104I | TTCGAA | 1 cut(s) | 3118 |
| BspT107I | GGYRCC | 4 cut(s) | 67, 3993, 4091, 4153 |
| BspTNI | GGTCTC | 2 cut(s) | 2184, 2876 |
| BsrBI | CCGCTC | 1 cut(s) | 2176 |
| BsrDI | GCAATG | 4 cut(s) | 1782, 2071, 2874, 3858 |
| BsrFI | RCCGGY | 2 cut(s) | 111, 3896 |
| BsrGI | TGTACA | 1 cut(s) | 3633 |
| BsrI | ACTGG | 8 cut(s) | 308, 358, 422, 935, 1418, 1725, 2321, 3475 |
| BssAI | RCCGGY | 2 cut(s) | 111, 3896 |
| BssMI | GATC | 9 cut(s) | 241, 540, 643, 1193, 1333, 1411, 1510, 1902, 2812 |
| BssNAI | GTATAC | 1 cut(s) | 3063 |
| BssNI | GRCGYC | 4 cut(s) | 59, 393, 4092, 4154 |
| BssT1I | CCWWGG | 7 cut(s) | 174, 483, 632, 964, 1164, 1949, 3206 |
| Bst1107I | GTATAC | 1 cut(s) | 3063 |
| Bst2UI | CCWGG | 6 cut(s) | 719, 1874, 2013, 2648, 2703, 3042 |
| Bst6I | CTCTTC | 7 cut(s) | 981, 1510, 3016, 3207, 3267, 3934, 4203 |
| BstACI | GRCGYC | 4 cut(s) | 59, 393, 4092, 4154 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1388, 1646 |
| BstAUI | TGTACA | 1 cut(s) | 3633 |
| BstBAI | YACGTR | 1 cut(s) | 3569 |
| BstBI | TTCGAA | 1 cut(s) | 3118 |
| BstC8I | GCNNGC | 6 cut(s) | 113, 730, 2062, 3476, 3675, 4158 |
| BstEII | GGTNACC | 1 cut(s) | 1315 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 963, 4016 |
| BstH2I | RGCGCY | 3 cut(s) | 1999, 4095, 4157 |
| BstHHI | GCGC | 3 cut(s) | 1998, 4094, 4156 |
| BstKTI | GATC | 9 cut(s) | 244, 543, 646, 1196, 1336, 1414, 1513, 1905, 2815 |
| BstMAI | GTCTC | 9 cut(s) | 171, 531, 1688, 1705, 2054, 2184, 2876, 3427, 3639 |
| BstMBI | GATC | 9 cut(s) | 241, 540, 643, 1193, 1333, 1411, 1510, 1902, 2812 |
| BstMCI | CGRYCG | 2 cut(s) | 90, 159 |
| BstNI | CCWGG | 6 cut(s) | 719, 1874, 2013, 2648, 2703, 3042 |
| BstNSI | RCATGY | 2 cut(s) | 1343, 1759 |
| BstPI | GGTNACC | 1 cut(s) | 1315 |
| BstSCI | CCNGG | 9 cut(s) | 102, 144, 702, 717, 1872, 2011, 2646, 2701, 3040 |
| BstSFI | CTRYAG | 4 cut(s) | 1038, 1070, 2331, 4053 |
| BstV2I | GAAGAC | 5 cut(s) | 191, 2649, 2686, 4000, 4302 |
| BstX2I | RGATCY | 1 cut(s) | 1193 |
| BstYI | RGATCY | 1 cut(s) | 1193 |
| BstZ17I | GTATAC | 1 cut(s) | 3063 |
| BstZI | CGGCCG | 1 cut(s) | 87 |
| Bsu15I | ATCGAT | 2 cut(s) | 2752, 3073 |
| BsuI | GTATCC | 2 cut(s) | 427, 3648 |
| BsuRI | GGCC | 4 cut(s) | 89, 1033, 3094, 4303 |
| BsuTUI | ATCGAT | 2 cut(s) | 2752, 3073 |
| BtrI | CACGTC | 1 cut(s) | 3032 |
| BtsI | GCAGTG | 1 cut(s) | 2680 |
| BtsIMutI | CAGTG | 5 cut(s) | 338, 922, 2328, 2680, 4242 |
| BveI | ACCTGC | 2 cut(s) | 1631, 3812 |
| Cac8I | GCNNGC | 6 cut(s) | 113, 730, 2062, 3476, 3675, 4158 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1859, 2771 |
| CfoI | GCGC | 3 cut(s) | 1998, 4094, 4156 |
| Cfr10I | RCCGGY | 2 cut(s) | 111, 3896 |
| Cfr13I | GGNCC | 7 cut(s) | 106, 135, 1031, 2459, 2762, 3485, 4302 |
| ClaI | ATCGAT | 2 cut(s) | 2752, 3073 |
| CseI | GACGC | 1 cut(s) | 382 |
| CsiI | ACCWGGT | 2 cut(s) | 2011, 2646 |
| Csp6I | GTAC | 9 cut(s) | 208, 956, 1676, 2091, 2168, 2555, 2575, 3634, 3994 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 981, 1016, 1473, 1508 |
| CviQI | GTAC | 9 cut(s) | 208, 956, 1676, 2091, 2168, 2555, 2575, 3634, 3994 |
| DinI | GGCGCC | 2 cut(s) | 4093, 4155 |
| DpnI | GATC | 9 cut(s) | 243, 542, 645, 1195, 1335, 1413, 1512, 1904, 2814 |
| DpnII | GATC | 9 cut(s) | 241, 540, 643, 1193, 1333, 1411, 1510, 1902, 2812 |
| DraI | TTTAAA | 1 cut(s) | 3981 |
| EaeI | YGGCCR | 1 cut(s) | 87 |
| EagI | CGGCCG | 1 cut(s) | 87 |
| Eam1104I | CTCTTC | 7 cut(s) | 981, 1510, 3016, 3207, 3267, 3934, 4203 |
| EarI | CTCTTC | 7 cut(s) | 981, 1510, 3016, 3207, 3267, 3934, 4203 |
| EciI | GGCGGA | 1 cut(s) | 98 |
| EclXI | CGGCCG | 1 cut(s) | 87 |
| Eco130I | CCWWGG | 7 cut(s) | 174, 483, 632, 964, 1164, 1949, 3206 |
| Eco24I | GRGCYC | 2 cut(s) | 2839, 3690 |
| Eco31I | GGTCTC | 2 cut(s) | 2184, 2876 |
| Eco32I | GATATC | 1 cut(s) | 2991 |
| Eco47I | GGWCC | 5 cut(s) | 106, 135, 2459, 2762, 3485 |
| Eco47III | AGCGCT | 1 cut(s) | 1997 |
| Eco52I | CGGCCG | 1 cut(s) | 87 |
| Eco57I | CTGAAG | 8 cut(s) | 362, 885, 1307, 2276, 2391, 2550, 3885, 4232 |
| Eco88I | CYCGRG | 2 cut(s) | 127, 408 |
| Eco91I | GGTNACC | 1 cut(s) | 1315 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 963, 4016 |
| EcoO109I | RGGNCCY | 1 cut(s) | 4302 |
| EcoO65I | GGTNACC | 1 cut(s) | 1315 |
| EcoRI | GAATTC | 1 cut(s) | 4237 |
| EcoRII | CCWGG | 6 cut(s) | 717, 1872, 2011, 2646, 2701, 3040 |
| EcoRV | GATATC | 1 cut(s) | 2991 |
| EcoT14I | CCWWGG | 7 cut(s) | 174, 483, 632, 964, 1164, 1949, 3206 |
| EcoT22I | ATGCAT | 1 cut(s) | 3763 |
| EcoT38I | GRGCYC | 2 cut(s) | 2839, 3690 |
| EgeI | GGCGCC | 2 cut(s) | 4093, 4155 |
| EheI | GGCGCC | 2 cut(s) | 4093, 4155 |
| ErhI | CCWWGG | 7 cut(s) | 174, 483, 632, 964, 1164, 1949, 3206 |
| Esp3I | CGTCTC | 3 cut(s) | 531, 1688, 2054 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1507, 1539, 2069, 2101, 3723, 3755 |
| FaqI | GGGAC | 6 cut(s) | 501, 719, 1160, 1926, 3679, 4131 |
| FauNDI | CATATG | 1 cut(s) | 841 |
| FbaI | TGATCA | 3 cut(s) | 1333, 1902, 2812 |
| FblI | GTMKAC | 1 cut(s) | 3062 |
| FriOI | GRGCYC | 2 cut(s) | 2839, 3690 |
| GlaI | GCGC | 3 cut(s) | 1997, 4093, 4155 |
| GsaI | CCCAGC | 1 cut(s) | 1308 |
| GsuI | CTGGAG | 6 cut(s) | 62, 918, 1581, 1742, 2400, 2724 |
| HaeII | RGCGCY | 3 cut(s) | 1999, 4095, 4157 |
| HaeIII | GGCC | 4 cut(s) | 89, 1033, 3094, 4303 |
| HapII | CCGG | 9 cut(s) | 103, 112, 146, 155, 703, 1197, 2558, 3107, 3897 |
| HgaI | GACGC | 1 cut(s) | 382 |
| HhaI | GCGC | 3 cut(s) | 1998, 4094, 4156 |
| Hin1I | GRCGYC | 4 cut(s) | 59, 393, 4092, 4154 |
| Hin6I | GCGC | 3 cut(s) | 1996, 4092, 4154 |
| HinP1I | GCGC | 3 cut(s) | 1996, 4092, 4154 |
| HincII | GTYRAC | 3 cut(s) | 993, 1400, 3279 |
| HindII | GTYRAC | 3 cut(s) | 993, 1400, 3279 |
| HindIII | AAGCTT | 2 cut(s) | 215, 2078 |
| HpaII | CCGG | 9 cut(s) | 103, 112, 146, 155, 703, 1197, 2558, 3107, 3897 |
| HphI | GGTGA | 7 cut(s) | 1309, 1415, 1811, 1859, 2001, 2201, 2522 |
| Hpy99I | CGWCG | 5 cut(s) | 31, 61, 64, 67, 2098 |
| HpyCH4IV | ACGT | 4 cut(s) | 59, 3031, 3067, 3568 |
| HpySE526I | ACGT | 4 cut(s) | 59, 3031, 3067, 3568 |
| Hsp92I | GRCGYC | 4 cut(s) | 59, 393, 4092, 4154 |
| HspAI | GCGC | 3 cut(s) | 1996, 4092, 4154 |
| KasI | GGCGCC | 2 cut(s) | 4091, 4153 |
| Kpn2I | TCCGGA | 2 cut(s) | 1196, 3106 |
| KpnI | GGTACC | 1 cut(s) | 3997 |
| KroI | GCCGGC | 1 cut(s) | 111 |
| KroNI | GCCGGC | 1 cut(s) | 113 |
| Ksp22I | TGATCA | 3 cut(s) | 1333, 1902, 2812 |
| Kzo9I | GATC | 9 cut(s) | 241, 540, 643, 1193, 1333, 1411, 1510, 1902, 2812 |
| LguI | GCTCTTC | 2 cut(s) | 1510, 3016 |
| MabI | ACCWGGT | 2 cut(s) | 2011, 2646 |
| MaeII | ACGT | 4 cut(s) | 59, 3031, 3067, 3568 |
| MaeIII | GTNAC | 8 cut(s) | 1315, 1342, 1928, 2143, 2353, 3167, 3506, 3878 |
| MalI | GATC | 9 cut(s) | 243, 542, 645, 1195, 1335, 1413, 1512, 1904, 2814 |
| MbiI | CCGCTC | 1 cut(s) | 2176 |
| MboI | GATC | 9 cut(s) | 241, 540, 643, 1193, 1333, 1411, 1510, 1902, 2812 |
| MfeI | CAATTG | 3 cut(s) | 1356, 3381, 3798 |
| MflI | RGATCY | 1 cut(s) | 1193 |
| MhlI | GDGCHC | 5 cut(s) | 915, 1703, 2839, 3259, 3690 |
| Mly113I | GGCGCC | 2 cut(s) | 4092, 4154 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| Mph1103I | ATGCAT | 1 cut(s) | 3763 |
| MroI | TCCGGA | 2 cut(s) | 1196, 3106 |
| MroNI | GCCGGC | 1 cut(s) | 111 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3561 |
| MslI | CAYNNNNRTG | 4 cut(s) | 372, 495, 2661, 3635 |
| MspA1I | CMGCKG | 1 cut(s) | 4169 |
| MspI | CCGG | 9 cut(s) | 103, 112, 146, 155, 703, 1197, 2558, 3107, 3897 |
| MspR9I | CCNGG | 9 cut(s) | 104, 146, 704, 719, 1874, 2013, 2648, 2703, 3042 |
| MunI | CAATTG | 3 cut(s) | 1356, 3381, 3798 |
| Mva1269I | GAATGC | 5 cut(s) | 298, 2100, 3126, 3389, 3544 |
| MvaI | CCWGG | 6 cut(s) | 719, 1874, 2013, 2648, 2703, 3042 |
| NaeI | GCCGGC | 1 cut(s) | 113 |
| NarI | GGCGCC | 2 cut(s) | 4092, 4154 |
| NciI | CCSGG | 3 cut(s) | 104, 146, 704 |
| NdeI | CATATG | 1 cut(s) | 841 |
| NdeII | GATC | 9 cut(s) | 241, 540, 643, 1193, 1333, 1411, 1510, 1902, 2812 |
| NgoMIV | GCCGGC | 1 cut(s) | 111 |
| NheI | GCTAGC | 1 cut(s) | 3673 |
| NmuCI | GTSAC | 3 cut(s) | 1315, 2353, 3506 |
| NsiI | ATGCAT | 1 cut(s) | 3763 |
| NspI | RCATGY | 2 cut(s) | 1343, 1759 |
| NspV | TTCGAA | 1 cut(s) | 3118 |
| OliI | CACNNNNGTG | 1 cut(s) | 372 |
| PaqCI | CACCTGC | 1 cut(s) | 1631 |
| PciI | ACATGT | 1 cut(s) | 1755 |
| PciSI | GCTCTTC | 2 cut(s) | 1510, 3016 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 68, 246, 521, 4011 |
| PctI | GAATGC | 5 cut(s) | 298, 2100, 3126, 3389, 3544 |
| PdiI | GCCGGC | 1 cut(s) | 113 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3561 |
| PflFI | GACNNNGTC | 2 cut(s) | 61, 3226 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 585 |
| PluTI | GGCGCC | 2 cut(s) | 4095, 4157 |
| Ppu21I | YACGTR | 1 cut(s) | 3569 |
| PscI | ACATGT | 1 cut(s) | 1755 |
| PsiI | TTATAA | 2 cut(s) | 2949, 3530 |
| Psp6I | CCWGG | 6 cut(s) | 717, 1872, 2011, 2646, 2701, 3040 |
| PspEI | GGTNACC | 1 cut(s) | 1315 |
| PspFI | CCCAGC | 1 cut(s) | 1304 |
| PspGI | CCWGG | 6 cut(s) | 717, 1872, 2011, 2646, 2701, 3040 |
| PspPI | GGNCC | 7 cut(s) | 106, 135, 1031, 2459, 2762, 3485, 4302 |
| PstI | CTGCAG | 2 cut(s) | 1042, 2335 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1859, 2771 |
| PsuI | RGATCY | 1 cut(s) | 1193 |
| PsyI | GACNNNGTC | 2 cut(s) | 61, 3226 |
| RsaI | GTAC | 9 cut(s) | 209, 957, 1677, 2092, 2169, 2556, 2576, 3635, 3995 |
| RsaNI | GTAC | 9 cut(s) | 208, 956, 1676, 2091, 2168, 2555, 2575, 3634, 3994 |
| RseI | CAYNNNNRTG | 4 cut(s) | 372, 495, 2661, 3635 |
| SapI | GCTCTTC | 2 cut(s) | 1510, 3016 |
| Sau3AI | GATC | 9 cut(s) | 241, 540, 643, 1193, 1333, 1411, 1510, 1902, 2812 |
| Sau96I | GGNCC | 7 cut(s) | 106, 135, 1031, 2459, 2762, 3485, 4302 |
| ScrFI | CCNGG | 9 cut(s) | 104, 146, 704, 719, 1874, 2013, 2648, 2703, 3042 |
| SduI | GDGCHC | 5 cut(s) | 915, 1703, 2839, 3259, 3690 |
| SexAI | ACCWGGT | 2 cut(s) | 2011, 2646 |
| SfcI | CTRYAG | 4 cut(s) | 1038, 1070, 2331, 4053 |
| SfoI | GGCGCC | 2 cut(s) | 4093, 4155 |
| SfuI | TTCGAA | 1 cut(s) | 3118 |
| SinI | GGWCC | 5 cut(s) | 106, 135, 2459, 2762, 3485 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 372, 495, 2661, 3635 |
| SmlI | CTYRAG | 7 cut(s) | 269, 749, 1608, 1685, 2369, 3394, 3616 |
| SmoI | CTYRAG | 7 cut(s) | 269, 749, 1608, 1685, 2369, 3394, 3616 |
| SpeI | ACTAGT | 1 cut(s) | 323 |
| SspDI | GGCGCC | 2 cut(s) | 4091, 4153 |
| SspI | AATATT | 2 cut(s) | 3354, 3813 |
| StyD4I | CCNGG | 9 cut(s) | 102, 144, 702, 717, 1872, 2011, 2646, 2701, 3040 |
| StyI | CCWWGG | 7 cut(s) | 174, 483, 632, 964, 1164, 1949, 3206 |
| TaiI | ACGT | 4 cut(s) | 62, 3034, 3070, 3571 |
| TatI | WGTACW | 3 cut(s) | 1675, 2167, 3633 |
| TauI | GCSGC | 3 cut(s) | 152, 1964, 3094 |
| TscAI | CASTG | 5 cut(s) | 345, 922, 2328, 2680, 4249 |
| TseFI | GTSAC | 3 cut(s) | 1315, 2353, 3506 |
| Tsp45I | GTSAC | 3 cut(s) | 1315, 2353, 3506 |
| TspGWI | ACGGA | 6 cut(s) | 2535, 2788, 2866, 3616, 4178, 4195 |
| TspRI | CASTG | 5 cut(s) | 345, 922, 2328, 2680, 4249 |
| Tth111I | GACNNNGTC | 2 cut(s) | 61, 3226 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 585 |
| VpaK11BI | GGWCC | 5 cut(s) | 106, 135, 2459, 2762, 3485 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 963, 4016 |
| XceI | RCATGY | 2 cut(s) | 1343, 1759 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2772 |
| XmiI | GTMKAC | 1 cut(s) | 3062 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3561 |
| ZraI | GACGTC | 1 cut(s) | 60 |
| Zsp2I | ATGCAT | 1 cut(s) | 3763 |