Helicase associated domain (HA2) Add an annotation
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G58050 AT1G58060 |
| fragaria_vesca | FvH4_5g21580 FvH4_5g21580 FvH4_5g21580 |
| malus_domestica | MD15G1433800.v1.1 MD15G1433900.v1.1 |
| prunus_persica | Prupe.1G577400_v2.0.a1 Prupe.1G577400_v2.0.a1 Prupe.1G577400_v2.0.a1 |
| pyrus_communis | pycom15g38290 |
| rosa_chinensis | RchiOBHm_Chr7g0209021 |
| rosa_laevigata | RLG00000003172 |
| rosa_multiflora | Rmu_co8235625.1_g000001 Rmu_sc0002829.1_g000011 Rmu_ssc0000190.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00249850 |
| rosa_rugosa | Rorug07G0108300 Rorug07G0108300 |
| rosa_samantha | Rh7AG242900 Rh7BG237800 Rh7CG258000 Rh7DG249900 |
| rosa_wichuraiana | Rw7G020580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2937, 4242 |
| AatII | GACGTC | 2 cut(s) | 26, 56 |
| Acc16I | TGCGCA | 2 cut(s) | 951, 3579 |
| Acc36I | ACCTGC | 1 cut(s) | 3800 |
| AccB1I | GGYRCC | 1 cut(s) | 4141 |
| AccBSI | CCGCTC | 1 cut(s) | 2164 |
| AccI | GTMKAC | 2 cut(s) | 153, 294 |
| AccIII | TCCGGA | 1 cut(s) | 2827 |
| AclWI | GGATC | 2 cut(s) | 542, 1640 |
| AcoI | YGGCCR | 1 cut(s) | 81 |
| AcuI | CTGAAG | 8 cut(s) | 356, 870, 1295, 1802, 2264, 2538, 3873, 4220 |
| AcvI | CACGTG | 1 cut(s) | 579 |
| AcyI | GRCGYC | 3 cut(s) | 23, 53, 137 |
| AfaI | GTAC | 8 cut(s) | 203, 1665, 2157, 2564, 3050, 3623, 3964, 3983 |
| AfeI | AGCGCT | 1 cut(s) | 1985 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 79, 718, 1591, 1775, 2000, 3088, 3541, 4006, 4168 |
| AflII | CTTAAG | 1 cut(s) | 3604 |
| AflIII | ACRYGT | 3 cut(s) | 1743, 3019, 3053 |
| AhlI | ACTAGT | 1 cut(s) | 317 |
| AjiI | CACGTC | 1 cut(s) | 3020 |
| AjnI | CCWGG | 5 cut(s) | 457, 711, 1999, 2689, 3028 |
| Alw21I | GWGCWC | 3 cut(s) | 900, 1691, 3247 |
| Alw26I | GTCTC | 5 cut(s) | 525, 1693, 2172, 2864, 3627 |
| AlwI | GGATC | 2 cut(s) | 542, 1640 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1847, 3836 |
| Ama87I | CYCGRG | 2 cut(s) | 64, 402 |
| Aor13HI | TCCGGA | 1 cut(s) | 2827 |
| Aor51HI | AGCGCT | 1 cut(s) | 1985 |
| AoxI | GGCC | 4 cut(s) | 61, 81, 124, 1019 |
| ApaI | GGGCCC | 1 cut(s) | 65 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 490, 522, 531, 563 |
| AseI | ATTAAT | 1 cut(s) | 2529 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1593, 3549 |
| AspLEI | GCGC | 5 cut(s) | 952, 1986, 2672, 3081, 3580 |
| AspS9I | GGNCC | 8 cut(s) | 61, 62, 100, 129, 616, 1019, 2423, 3473 |
| AsuC2I | CCSGG | 1 cut(s) | 98 |
| AsuHPI | GGTGA | 7 cut(s) | 220, 1403, 1799, 1847, 1989, 2189, 2510 |
| AsuII | TTCGAA | 1 cut(s) | 167 |
| AsuNHI | GCTAGC | 1 cut(s) | 3661 |
| AvaI | CYCGRG | 2 cut(s) | 64, 402 |
| AvaII | GGWCC | 5 cut(s) | 100, 129, 616, 2423, 3473 |
| BaeGI | GKGCMC | 1 cut(s) | 65 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2284, 2317, 4029, 4062 |
| BanI | GGYRCC | 1 cut(s) | 4141 |
| BanII | GRGCYC | 4 cut(s) | 65, 1691, 2827, 3678 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3924, 3956 |
| BbrPI | CACGTG | 1 cut(s) | 579 |
| BbsI | GAAGAC | 4 cut(s) | 185, 2637, 2674, 3988 |
| Bbv12I | GWGCWC | 3 cut(s) | 900, 1691, 3247 |
| BbvCI | CCTCAGC | 1 cut(s) | 1347 |
| BceAI | ACGGC | 2 cut(s) | 182, 4155 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1526, 1560 |
| BciT130I | CCWGG | 5 cut(s) | 459, 713, 2001, 2691, 3030 |
| BciVI | GTATCC | 4 cut(s) | 421, 799, 814, 3636 |
| BclI | TGATCA | 3 cut(s) | 235, 1321, 1890 |
| BcnI | CCSGG | 1 cut(s) | 98 |
| BcoDI | GTCTC | 5 cut(s) | 525, 1693, 2172, 2864, 3627 |
| BcuI | ACTAGT | 1 cut(s) | 317 |
| BfmI | CTRYAG | 5 cut(s) | 291, 901, 1058, 1479, 2319 |
| BfoI | RGCGCY | 2 cut(s) | 1987, 2673 |
| BfrI | CTTAAG | 1 cut(s) | 3604 |
| BfuAI | ACCTGC | 1 cut(s) | 3800 |
| BfuI | GTATCC | 4 cut(s) | 421, 799, 814, 3636 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3890 |
| BmcAI | AGTACT | 1 cut(s) | 3964 |
| Bme1390I | CCNGG | 6 cut(s) | 98, 459, 713, 2001, 2691, 3030 |
| Bme18I | GGWCC | 5 cut(s) | 100, 129, 616, 2423, 3473 |
| BmeT110I | CYCGRG | 2 cut(s) | 64, 402 |
| BmgBI | CACGTC | 1 cut(s) | 3020 |
| BmgT120I | GGNCC | 8 cut(s) | 61, 62, 100, 129, 616, 1019, 2423, 3473 |
| BmrFI | CCNGG | 6 cut(s) | 98, 459, 713, 2001, 2691, 3030 |
| BmrI | ACTGGG | 3 cut(s) | 1400, 3468, 3846 |
| BmtI | GCTAGC | 1 cut(s) | 3665 |
| BmuI | ACTGGG | 3 cut(s) | 1400, 3468, 3846 |
| BpiI | GAAGAC | 4 cut(s) | 185, 2637, 2674, 3988 |
| BpmI | CTGGAG | 3 cut(s) | 56, 1047, 2388 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1347 |
| Bpu14I | TTCGAA | 1 cut(s) | 167 |
| BpuEI | CTTGAG | 5 cut(s) | 248, 728, 1730, 2378, 3403 |
| BpuMI | CCSGG | 1 cut(s) | 98 |
| Bsa29I | ATCGAT | 1 cut(s) | 3061 |
| BsaAI | YACGTR | 1 cut(s) | 579 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2553, 2619 |
| BsaHI | GRCGYC | 3 cut(s) | 23, 53, 137 |
| BsaI | GGTCTC | 2 cut(s) | 2172, 2864 |
| BsaJI | CCNNGG | 9 cut(s) | 65, 477, 626, 1937, 1959, 2412, 2433, 3177, 3194 |
| BsaWI | WCCGGW | 2 cut(s) | 148, 2827 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 890, 920 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 79, 718, 1591, 1775, 2000, 3088, 3541, 4006, 4168 |
| Bse118I | RCCGGY | 1 cut(s) | 126 |
| Bse3DI | GCAATG | 5 cut(s) | 1770, 2059, 2862, 3678, 3846 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2553, 2619 |
| BseAI | TCCGGA | 1 cut(s) | 2827 |
| BseBI | CCWGG | 5 cut(s) | 459, 713, 2001, 2691, 3030 |
| BseCI | ATCGAT | 1 cut(s) | 3061 |
| BseDI | CCNNGG | 9 cut(s) | 65, 477, 626, 1937, 1959, 2412, 2433, 3177, 3194 |
| BseJI | GATNNNNATC | 2 cut(s) | 2553, 2619 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 79, 718, 1591, 1775, 2000, 3088, 3541, 4006, 4168 |
| BseMI | GCAATG | 5 cut(s) | 1770, 2059, 2862, 3678, 3846 |
| BseMII | CTCAG | 7 cut(s) | 135, 188, 435, 536, 1338, 1874, 2087 |
| BseRI | GAGGAG | 2 cut(s) | 908, 3261 |
| BseSI | GKGCMC | 1 cut(s) | 65 |
| BseX3I | CGGCCG | 1 cut(s) | 81 |
| BseYI | CCCAGC | 1 cut(s) | 1292 |
| BsgI | GTGCAG | 3 cut(s) | 648, 1746, 3828 |
| Bsh1285I | CGRYCG | 2 cut(s) | 84, 153 |
| BshFI | GGCC | 4 cut(s) | 63, 83, 126, 1021 |
| BshNI | GGYRCC | 1 cut(s) | 4141 |
| BshVI | ATCGAT | 1 cut(s) | 3061 |
| BsiEI | CGRYCG | 2 cut(s) | 84, 153 |
| BsiHKAI | GWGCWC | 3 cut(s) | 900, 1691, 3247 |
| BsiHKCI | CYCGRG | 2 cut(s) | 64, 402 |
| BsiSI | CCGG | 4 cut(s) | 97, 127, 149, 2828 |
| BslFI | GGGAC | 5 cut(s) | 145, 364, 495, 713, 1148 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 79, 718, 1591, 1775, 2000, 3088, 3541, 4006, 4168 |
| BsmAI | GTCTC | 5 cut(s) | 525, 1693, 2172, 2864, 3627 |
| BsmBI | CGTCTC | 1 cut(s) | 525 |
| BsmFI | GGGAC | 5 cut(s) | 145, 364, 495, 713, 1148 |
| BsmI | GAATGC | 2 cut(s) | 2088, 3377 |
| BsnI | GGCC | 4 cut(s) | 63, 83, 126, 1021 |
| Bso31I | GGTCTC | 2 cut(s) | 2172, 2864 |
| BsoBI | CYCGRG | 2 cut(s) | 64, 402 |
| Bsp119I | TTCGAA | 1 cut(s) | 167 |
| Bsp120I | GGGCCC | 1 cut(s) | 61 |
| Bsp1286I | GDGCHC | 6 cut(s) | 65, 900, 1691, 2827, 3247, 3678 |
| Bsp13I | TCCGGA | 1 cut(s) | 2827 |
| Bsp1407I | TGTACA | 2 cut(s) | 3048, 3621 |
| BspANI | GGCC | 4 cut(s) | 63, 83, 126, 1021 |
| BspCNI | CTCAG | 7 cut(s) | 134, 187, 434, 535, 1339, 1873, 2088 |
| BspDI | ATCGAT | 1 cut(s) | 3061 |
| BspEI | TCCGGA | 1 cut(s) | 2827 |
| BspMAI | CTGCAG | 2 cut(s) | 905, 2323 |
| BspMI | ACCTGC | 1 cut(s) | 3800 |
| BspOI | GCTAGC | 1 cut(s) | 3665 |
| BspPI | GGATC | 2 cut(s) | 542, 1640 |
| BspQI | GCTCTTC | 3 cut(s) | 1608, 3004, 3690 |
| BspT104I | TTCGAA | 1 cut(s) | 167 |
| BspT107I | GGYRCC | 1 cut(s) | 4141 |
| BspTI | CTTAAG | 1 cut(s) | 3604 |
| BspTNI | GGTCTC | 2 cut(s) | 2172, 2864 |
| BsrBI | CCGCTC | 1 cut(s) | 2164 |
| BsrDI | GCAATG | 5 cut(s) | 1770, 2059, 2862, 3678, 3846 |
| BsrFI | RCCGGY | 1 cut(s) | 126 |
| BsrGI | TGTACA | 2 cut(s) | 3048, 3621 |
| BssAI | RCCGGY | 1 cut(s) | 126 |
| BssECI | CCNNGG | 9 cut(s) | 65, 477, 626, 1937, 1959, 2412, 2433, 3177, 3194 |
| BssNI | GRCGYC | 3 cut(s) | 23, 53, 137 |
| BssT1I | CCWWGG | 7 cut(s) | 477, 626, 1937, 2412, 2433, 3177, 3194 |
| Bst2UI | CCWGG | 5 cut(s) | 459, 713, 2001, 2691, 3030 |
| BstACI | GRCGYC | 3 cut(s) | 23, 53, 137 |
| BstAFI | CTTAAG | 1 cut(s) | 3604 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4154 |
| BstAUI | TGTACA | 2 cut(s) | 3048, 3621 |
| BstBAI | YACGTR | 1 cut(s) | 579 |
| BstBI | TTCGAA | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 6 cut(s) | 41, 141, 724, 1931, 2050, 3663 |
| BstDSI | CCRYGG | 1 cut(s) | 1959 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 4004, 4166 |
| BstH2I | RGCGCY | 2 cut(s) | 1987, 2673 |
| BstHHI | GCGC | 5 cut(s) | 952, 1986, 2672, 3081, 3580 |
| BstMAI | GTCTC | 5 cut(s) | 525, 1693, 2172, 2864, 3627 |
| BstMCI | CGRYCG | 2 cut(s) | 84, 153 |
| BstNI | CCWGG | 5 cut(s) | 459, 713, 2001, 2691, 3030 |
| BstNSI | RCATGY | 1 cut(s) | 1747 |
| BstSCI | CCNGG | 6 cut(s) | 96, 457, 711, 1999, 2689, 3028 |
| BstSFI | CTRYAG | 5 cut(s) | 291, 901, 1058, 1479, 2319 |
| BstSLI | GKGCMC | 1 cut(s) | 65 |
| BstV2I | GAAGAC | 4 cut(s) | 185, 2637, 2674, 3988 |
| BstZI | CGGCCG | 1 cut(s) | 81 |
| Bsu15I | ATCGAT | 1 cut(s) | 3061 |
| BsuI | GTATCC | 4 cut(s) | 421, 799, 814, 3636 |
| BsuRI | GGCC | 4 cut(s) | 63, 83, 126, 1021 |
| BsuTUI | ATCGAT | 1 cut(s) | 3061 |
| BtgI | CCRYGG | 1 cut(s) | 1959 |
| BtgZI | GCGATG | 1 cut(s) | 2676 |
| BtrI | CACGTC | 1 cut(s) | 3020 |
| BtsI | GCAGTG | 1 cut(s) | 898 |
| BtsIMutI | CAGTG | 8 cut(s) | 332, 429, 898, 1255, 1641, 1912, 3449, 3834 |
| BveI | ACCTGC | 1 cut(s) | 3800 |
| Cac8I | GCNNGC | 6 cut(s) | 41, 141, 724, 1931, 2050, 3663 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1847, 3836 |
| CfoI | GCGC | 5 cut(s) | 952, 1986, 2672, 3081, 3580 |
| Cfr10I | RCCGGY | 1 cut(s) | 126 |
| Cfr13I | GGNCC | 8 cut(s) | 61, 62, 100, 129, 616, 1019, 2423, 3473 |
| ClaI | ATCGAT | 1 cut(s) | 3061 |
| CseI | GACGC | 1 cut(s) | 145 |
| CsiI | ACCWGGT | 1 cut(s) | 1999 |
| Csp6I | GTAC | 8 cut(s) | 202, 1664, 2156, 2563, 3049, 3622, 3963, 3982 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2845, 2880 |
| CviQI | GTAC | 8 cut(s) | 202, 1664, 2156, 2563, 3049, 3622, 3963, 3982 |
| DraI | TTTAAA | 2 cut(s) | 309, 3969 |
| EaeI | YGGCCR | 1 cut(s) | 81 |
| EagI | CGGCCG | 1 cut(s) | 81 |
| EciI | GGCGGA | 1 cut(s) | 92 |
| Ecl136II | GAGCTC | 1 cut(s) | 1689 |
| EclXI | CGGCCG | 1 cut(s) | 81 |
| Eco130I | CCWWGG | 7 cut(s) | 477, 626, 1937, 2412, 2433, 3177, 3194 |
| Eco24I | GRGCYC | 4 cut(s) | 65, 1691, 2827, 3678 |
| Eco31I | GGTCTC | 2 cut(s) | 2172, 2864 |
| Eco32I | GATATC | 2 cut(s) | 78, 1792 |
| Eco47I | GGWCC | 5 cut(s) | 100, 129, 616, 2423, 3473 |
| Eco47III | AGCGCT | 1 cut(s) | 1985 |
| Eco52I | CGGCCG | 1 cut(s) | 81 |
| Eco53kI | GAGCTC | 1 cut(s) | 1689 |
| Eco57I | CTGAAG | 8 cut(s) | 356, 870, 1295, 1802, 2264, 2538, 3873, 4220 |
| Eco72I | CACGTG | 1 cut(s) | 579 |
| Eco88I | CYCGRG | 2 cut(s) | 64, 402 |
| EcoICRI | GAGCTC | 1 cut(s) | 1689 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 4004, 4166 |
| EcoRII | CCWGG | 5 cut(s) | 457, 711, 1999, 2689, 3028 |
| EcoRV | GATATC | 2 cut(s) | 78, 1792 |
| EcoT14I | CCWWGG | 7 cut(s) | 477, 626, 1937, 2412, 2433, 3177, 3194 |
| EcoT38I | GRGCYC | 4 cut(s) | 65, 1691, 2827, 3678 |
| ErhI | CCWWGG | 7 cut(s) | 477, 626, 1937, 2412, 2433, 3177, 3194 |
| Esp3I | CGTCTC | 1 cut(s) | 525 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1495, 1527, 1999, 2031, 2022, 2054, 3711, 3743 |
| FaqI | GGGAC | 5 cut(s) | 145, 364, 495, 713, 1148 |
| FauI | CCCGC | 1 cut(s) | 480 |
| FbaI | TGATCA | 3 cut(s) | 235, 1321, 1890 |
| FblI | GTMKAC | 2 cut(s) | 153, 294 |
| FriOI | GRGCYC | 4 cut(s) | 65, 1691, 2827, 3678 |
| FspI | TGCGCA | 2 cut(s) | 951, 3579 |
| GlaI | GCGC | 5 cut(s) | 951, 1985, 2671, 3080, 3579 |
| GsaI | CCCAGC | 1 cut(s) | 1296 |
| GsuI | CTGGAG | 3 cut(s) | 56, 1047, 2388 |
| HaeII | RGCGCY | 2 cut(s) | 1987, 2673 |
| HaeIII | GGCC | 4 cut(s) | 63, 83, 126, 1021 |
| HapII | CCGG | 4 cut(s) | 97, 127, 149, 2828 |
| HgaI | GACGC | 1 cut(s) | 145 |
| HhaI | GCGC | 5 cut(s) | 952, 1986, 2672, 3081, 3580 |
| Hin1I | GRCGYC | 3 cut(s) | 23, 53, 137 |
| Hin6I | GCGC | 5 cut(s) | 950, 1984, 2670, 3079, 3578 |
| HinP1I | GCGC | 5 cut(s) | 950, 1984, 2670, 3079, 3578 |
| HincII | GTYRAC | 7 cut(s) | 154, 573, 880, 1388, 3267, 3456, 3937 |
| HindII | GTYRAC | 7 cut(s) | 154, 573, 880, 1388, 3267, 3456, 3937 |
| HindIII | AAGCTT | 3 cut(s) | 209, 2066, 2754 |
| HpaI | GTTAAC | 1 cut(s) | 3937 |
| HpaII | CCGG | 4 cut(s) | 97, 127, 149, 2828 |
| HphI | GGTGA | 7 cut(s) | 220, 1403, 1799, 1847, 1989, 2189, 2510 |
| Hpy99I | CGWCG | 8 cut(s) | 28, 55, 58, 61, 139, 158, 2086, 3006 |
| HpyCH4IV | ACGT | 6 cut(s) | 23, 53, 578, 3019, 3055, 3904 |
| HpySE526I | ACGT | 6 cut(s) | 23, 53, 578, 3019, 3055, 3904 |
| Hsp92I | GRCGYC | 3 cut(s) | 23, 53, 137 |
| HspAI | GCGC | 5 cut(s) | 950, 1984, 2670, 3079, 3578 |
| Kpn2I | TCCGGA | 1 cut(s) | 2827 |
| Ksp22I | TGATCA | 3 cut(s) | 235, 1321, 1890 |
| KspAI | GTTAAC | 1 cut(s) | 3937 |
| LguI | GCTCTTC | 3 cut(s) | 1608, 3004, 3690 |
| LmnI | GCTCC | 8 cut(s) | 10, 75, 151, 895, 911, 1809, 2830, 4085 |
| MabI | ACCWGGT | 1 cut(s) | 1999 |
| MaeII | ACGT | 6 cut(s) | 23, 53, 578, 3019, 3055, 3904 |
| MaeIII | GTNAC | 4 cut(s) | 1303, 1916, 2341, 3155 |
| MbiI | CCGCTC | 1 cut(s) | 2164 |
| MfeI | CAATTG | 1 cut(s) | 3786 |
| MhlI | GDGCHC | 6 cut(s) | 65, 900, 1691, 2827, 3247, 3678 |
| MlyI | GAGTC | 9 cut(s) | 102, 167, 409, 493, 578, 986, 1130, 1514, 3262 |
| MmeI | TCCRAC | 1 cut(s) | 3531 |
| MroI | TCCGGA | 1 cut(s) | 2827 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1593, 3549 |
| MslI | CAYNNNNRTG | 4 cut(s) | 366, 864, 2649, 3521 |
| MspA1I | CMGCKG | 3 cut(s) | 143, 487, 596 |
| MspCI | CTTAAG | 1 cut(s) | 3604 |
| MspI | CCGG | 4 cut(s) | 97, 127, 149, 2828 |
| MspR9I | CCNGG | 6 cut(s) | 98, 459, 713, 2001, 2691, 3030 |
| MunI | CAATTG | 1 cut(s) | 3786 |
| Mva1269I | GAATGC | 2 cut(s) | 2088, 3377 |
| MvaI | CCWGG | 5 cut(s) | 459, 713, 2001, 2691, 3030 |
| NciI | CCSGG | 1 cut(s) | 98 |
| NheI | GCTAGC | 1 cut(s) | 3661 |
| NmeAIII | GCCGAG | 1 cut(s) | 109 |
| NmuCI | GTSAC | 2 cut(s) | 1303, 2341 |
| NsbI | TGCGCA | 2 cut(s) | 951, 3579 |
| NspI | RCATGY | 1 cut(s) | 1747 |
| NspV | TTCGAA | 1 cut(s) | 167 |
| PciI | ACATGT | 1 cut(s) | 1743 |
| PciSI | GCTCTTC | 3 cut(s) | 1608, 3004, 3690 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 62, 515, 4008 |
| PctI | GAATGC | 2 cut(s) | 2088, 3377 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1593, 3549 |
| PflFI | GACNNNGTC | 1 cut(s) | 55 |
| PleI | GAGTC | 9 cut(s) | 102, 166, 409, 493, 577, 985, 1130, 1514, 3262 |
| PmaCI | CACGTG | 1 cut(s) | 579 |
| PmlI | CACGTG | 1 cut(s) | 579 |
| PpsI | GAGTC | 9 cut(s) | 102, 166, 409, 493, 577, 985, 1130, 1514, 3262 |
| Ppu21I | YACGTR | 1 cut(s) | 579 |
| PscI | ACATGT | 1 cut(s) | 1743 |
| PshBI | ATTAAT | 1 cut(s) | 2529 |
| PsiI | TTATAA | 2 cut(s) | 2937, 4242 |
| Psp124BI | GAGCTC | 1 cut(s) | 1691 |
| Psp6I | CCWGG | 5 cut(s) | 457, 711, 1999, 2689, 3028 |
| PspCI | CACGTG | 1 cut(s) | 579 |
| PspFI | CCCAGC | 1 cut(s) | 1292 |
| PspGI | CCWGG | 5 cut(s) | 457, 711, 1999, 2689, 3028 |
| PspOMI | GGGCCC | 1 cut(s) | 61 |
| PspPI | GGNCC | 8 cut(s) | 61, 62, 100, 129, 616, 1019, 2423, 3473 |
| PstI | CTGCAG | 2 cut(s) | 905, 2323 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1847, 3836 |
| PsyI | GACNNNGTC | 1 cut(s) | 55 |
| PvuII | CAGCTG | 1 cut(s) | 596 |
| RsaI | GTAC | 8 cut(s) | 203, 1665, 2157, 2564, 3050, 3623, 3964, 3983 |
| RsaNI | GTAC | 8 cut(s) | 202, 1664, 2156, 2563, 3049, 3622, 3963, 3982 |
| RseI | CAYNNNNRTG | 4 cut(s) | 366, 864, 2649, 3521 |
| SacI | GAGCTC | 1 cut(s) | 1691 |
| SalI | GTCGAC | 1 cut(s) | 152 |
| SapI | GCTCTTC | 3 cut(s) | 1608, 3004, 3690 |
| Sau96I | GGNCC | 8 cut(s) | 61, 62, 100, 129, 616, 1019, 2423, 3473 |
| ScaI | AGTACT | 1 cut(s) | 3964 |
| SchI | GAGTC | 9 cut(s) | 102, 167, 409, 493, 578, 986, 1130, 1514, 3262 |
| ScrFI | CCNGG | 6 cut(s) | 98, 459, 713, 2001, 2691, 3030 |
| SduI | GDGCHC | 6 cut(s) | 65, 900, 1691, 2827, 3247, 3678 |
| SexAI | ACCWGGT | 1 cut(s) | 1999 |
| SfcI | CTRYAG | 5 cut(s) | 291, 901, 1058, 1479, 2319 |
| SfuI | TTCGAA | 1 cut(s) | 167 |
| SinI | GGWCC | 5 cut(s) | 100, 129, 616, 2423, 3473 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 366, 864, 2649, 3521 |
| SmlI | CTYRAG | 6 cut(s) | 263, 743, 1709, 2357, 3382, 3604 |
| SmoI | CTYRAG | 6 cut(s) | 263, 743, 1709, 2357, 3382, 3604 |
| SpeI | ACTAGT | 1 cut(s) | 317 |
| SspI | AATATT | 4 cut(s) | 2527, 3342, 3801, 3826 |
| SstI | GAGCTC | 1 cut(s) | 1691 |
| StyD4I | CCNGG | 6 cut(s) | 96, 457, 711, 1999, 2689, 3028 |
| StyI | CCWWGG | 7 cut(s) | 477, 626, 1937, 2412, 2433, 3177, 3194 |
| TaiI | ACGT | 6 cut(s) | 26, 56, 581, 3022, 3058, 3907 |
| TatI | WGTACW | 5 cut(s) | 1663, 2155, 3048, 3621, 3962 |
| TauI | GCSGC | 2 cut(s) | 146, 1952 |
| TscAI | CASTG | 8 cut(s) | 339, 429, 905, 1255, 1648, 1919, 3456, 3841 |
| TseFI | GTSAC | 2 cut(s) | 1303, 2341 |
| Tsp45I | GTSAC | 2 cut(s) | 1303, 2341 |
| TspGWI | ACGGA | 4 cut(s) | 1948, 2776, 3545, 4183 |
| TspRI | CASTG | 8 cut(s) | 339, 429, 905, 1255, 1648, 1919, 3456, 3841 |
| Tth111I | GACNNNGTC | 1 cut(s) | 55 |
| Vha464I | CTTAAG | 1 cut(s) | 3604 |
| VpaK11BI | GGWCC | 5 cut(s) | 100, 129, 616, 2423, 3473 |
| VspI | ATTAAT | 1 cut(s) | 2529 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 4004, 4166 |
| XceI | RCATGY | 1 cut(s) | 1747 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4100 |
| XmiI | GTMKAC | 2 cut(s) | 153, 294 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1593, 3549 |
| ZraI | GACGTC | 2 cut(s) | 24, 54 |
| ZrmI | AGTACT | 1 cut(s) | 3964 |