ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G58050 AT1G58060 |
| fragaria_vesca | FvH4_5g21580 FvH4_5g21580 FvH4_5g21580 |
| malus_domestica | MD15G1433800.v1.1 MD15G1433900.v1.1 |
| prunus_persica | Prupe.1G577400_v2.0.a1 Prupe.1G577400_v2.0.a1 Prupe.1G577400_v2.0.a1 |
| pyrus_communis | pycom15g38290 |
| rosa_chinensis | RchiOBHm_Chr7g0209021 |
| rosa_laevigata | RLG00000003172 |
| rosa_multiflora | Rmu_co8235625.1_g000001 Rmu_sc0002829.1_g000011 Rmu_ssc0000190.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00249850 |
| rosa_rugosa | Rorug07G0108300 Rorug07G0108300 |
| rosa_samantha | Rh7AG242900 Rh7BG237800 Rh7CG258000 Rh7DG249900 |
| rosa_wichuraiana | Rw7G020580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2997 |
| AatII | GACGTC | 1 cut(s) | 116 |
| Acc16I | TGCGCA | 1 cut(s) | 3639 |
| Acc36I | ACCTGC | 1 cut(s) | 3860 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3244 |
| AccBSI | CCGCTC | 1 cut(s) | 2224 |
| AccI | GTMKAC | 3 cut(s) | 207, 963, 2514 |
| AccII | CGCG | 2 cut(s) | 197, 724 |
| AclWI | GGATC | 7 cut(s) | 596, 1214, 1227, 1912, 1945, 2821, 2834 |
| AcoI | YGGCCR | 3 cut(s) | 73, 184, 3076 |
| AcsI | RAATTY | 9 cut(s) | 851, 1115, 1183, 1793, 2162, 2644, 2763, 3093, 4034 |
| AcuI | CTGAAG | 5 cut(s) | 954, 1005, 1379, 2598, 3258 |
| AcyI | GRCGYC | 1 cut(s) | 113 |
| AfaI | GTAC | 9 cut(s) | 257, 447, 631, 713, 2094, 2217, 3110, 3683, 4002 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 126, 775, 1835, 2060, 3148, 3244, 3937, 4228 |
| AflII | CTTAAG | 1 cut(s) | 3442 |
| AgeI | ACCGGT | 1 cut(s) | 2799 |
| AhlI | ACTAGT | 1 cut(s) | 3113 |
| AjiI | CACGTC | 1 cut(s) | 1964 |
| AjnI | CCWGG | 9 cut(s) | 125, 370, 768, 1695, 2749, 3088, 3237, 3943, 3971 |
| Alw21I | GWGCWC | 3 cut(s) | 384, 1751, 3307 |
| Alw26I | GTCTC | 6 cut(s) | 579, 1055, 2166, 2232, 2924, 3687 |
| AlwI | GGATC | 7 cut(s) | 596, 1214, 1227, 1912, 1945, 2821, 2834 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2819, 3896 |
| Ama87I | CYCGRG | 1 cut(s) | 456 |
| AoxI | GGCC | 8 cut(s) | 63, 73, 121, 184, 234, 249, 3076, 3214 |
| ApoI | RAATTY | 9 cut(s) | 851, 1115, 1183, 1793, 2162, 2644, 2763, 3093, 4034 |
| AseI | ATTAAT | 1 cut(s) | 2589 |
| AsiGI | ACCGGT | 1 cut(s) | 2799 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3609 |
| AspLEI | GCGC | 5 cut(s) | 668, 724, 2436, 3141, 3640 |
| AspS9I | GGNCC | 8 cut(s) | 122, 199, 249, 528, 1582, 2507, 3214, 3533 |
| AsuC2I | CCSGG | 2 cut(s) | 513, 2061 |
| AsuHPI | GGTGA | 7 cut(s) | 274, 1859, 2049, 2249, 2570, 3408, 3834 |
| AsuII | TTCGAA | 1 cut(s) | 3166 |
| AvaI | CYCGRG | 1 cut(s) | 456 |
| AvaII | GGWCC | 5 cut(s) | 199, 528, 1582, 2507, 3533 |
| BalI | TGGCCA | 1 cut(s) | 75 |
| BamHI | GGATCC | 2 cut(s) | 1219, 2826 |
| BanII | GRGCYC | 3 cut(s) | 384, 1515, 1751 |
| BbsI | GAAGAC | 5 cut(s) | 2507, 2697, 2734, 4048, 4350 |
| Bbv12I | GWGCWC | 3 cut(s) | 384, 1751, 3307 |
| BbvCI | CCTCAGC | 1 cut(s) | 1431 |
| BceAI | ACGGC | 4 cut(s) | 171, 236, 299, 3063 |
| BciT130I | CCWGG | 9 cut(s) | 127, 372, 770, 1697, 2751, 3090, 3239, 3945, 3973 |
| BciVI | GTATCC | 4 cut(s) | 475, 499, 3696, 4053 |
| BclI | TGATCA | 3 cut(s) | 289, 1405, 2860 |
| BcnI | CCSGG | 2 cut(s) | 513, 2061 |
| BcoDI | GTCTC | 6 cut(s) | 579, 1055, 2166, 2232, 2924, 3687 |
| BcuI | ACTAGT | 1 cut(s) | 3113 |
| BfmI | CTRYAG | 5 cut(s) | 735, 985, 1142, 2379, 2511 |
| BfoI | RGCGCY | 1 cut(s) | 669 |
| BfrI | CTTAAG | 1 cut(s) | 3442 |
| BfuAI | ACCTGC | 1 cut(s) | 3860 |
| BfuI | GTATCC | 4 cut(s) | 475, 499, 3696, 4053 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3337 |
| Bme18I | GGWCC | 5 cut(s) | 199, 528, 1582, 2507, 3533 |
| BmeT110I | CYCGRG | 1 cut(s) | 456 |
| BmgBI | CACGTC | 1 cut(s) | 1964 |
| BmgT120I | GGNCC | 8 cut(s) | 122, 199, 249, 528, 1582, 2507, 3214, 3533 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4217 |
| BpiI | GAAGAC | 5 cut(s) | 2507, 2697, 2734, 4048, 4350 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 203, 235, 251, 283, 1155, 1187, 1809, 1841 |
| BpmI | CTGGAG | 4 cut(s) | 116, 1679, 1790, 2772 |
| Bpu10I | CCTNAGC | 3 cut(s) | 245, 669, 1431 |
| Bpu14I | TTCGAA | 1 cut(s) | 3166 |
| BpuEI | CTTGAG | 3 cut(s) | 374, 785, 2438 |
| BpuMI | CCSGG | 2 cut(s) | 513, 2061 |
| Bsa29I | ATCGAT | 1 cut(s) | 3121 |
| BsaAI | YACGTR | 2 cut(s) | 2613, 3617 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2613, 2679 |
| BsaHI | GRCGYC | 1 cut(s) | 113 |
| BsaI | GGTCTC | 2 cut(s) | 2232, 2924 |
| BsaWI | WCCGGW | 1 cut(s) | 2799 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 126, 775, 1835, 2060, 3148, 3244, 3937, 4228 |
| Bse118I | RCCGGY | 2 cut(s) | 61, 2799 |
| Bse1I | ACTGG | 8 cut(s) | 356, 470, 1773, 1954, 2191, 2399, 2509, 4168 |
| Bse3DI | GCAATG | 3 cut(s) | 1830, 3885, 3906 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2613, 2679 |
| BseBI | CCWGG | 9 cut(s) | 127, 372, 770, 1697, 2751, 3090, 3239, 3945, 3973 |
| BseCI | ATCGAT | 1 cut(s) | 3121 |
| BseJI | GATNNNNATC | 2 cut(s) | 2613, 2679 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 126, 775, 1835, 2060, 3148, 3244, 3937, 4228 |
| BseMI | GCAATG | 3 cut(s) | 1830, 3885, 3906 |
| BseNI | ACTGG | 8 cut(s) | 356, 470, 1773, 1954, 2191, 2399, 2509, 4168 |
| BseRI | GAGGAG | 4 cut(s) | 161, 164, 4344, 4347 |
| BseX3I | CGGCCG | 1 cut(s) | 184 |
| BseYI | CCCAGC | 4 cut(s) | 44, 84, 1376, 2553 |
| BsgI | GTGCAG | 2 cut(s) | 1806, 3888 |
| Bsh1236I | CGCG | 2 cut(s) | 197, 724 |
| Bsh1285I | CGRYCG | 2 cut(s) | 187, 2493 |
| BshFI | GGCC | 8 cut(s) | 65, 75, 123, 186, 236, 251, 3078, 3216 |
| BshTI | ACCGGT | 1 cut(s) | 2799 |
| BshVI | ATCGAT | 1 cut(s) | 3121 |
| BsiEI | CGRYCG | 2 cut(s) | 187, 2493 |
| BsiHKAI | GWGCWC | 3 cut(s) | 384, 1751, 3307 |
| BsiHKCI | CYCGRG | 1 cut(s) | 456 |
| BsiSI | CCGG | 7 cut(s) | 62, 120, 183, 512, 2061, 2465, 2800 |
| BslFI | GGGAC | 4 cut(s) | 185, 473, 3220, 4109 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 126, 775, 1835, 2060, 3148, 3244, 3937, 4228 |
| BsmAI | GTCTC | 6 cut(s) | 579, 1055, 2166, 2232, 2924, 3687 |
| BsmBI | CGTCTC | 1 cut(s) | 579 |
| BsmFI | GGGAC | 4 cut(s) | 185, 473, 3220, 4109 |
| BsmI | GAATGC | 2 cut(s) | 3174, 3437 |
| BsnI | GGCC | 8 cut(s) | 65, 75, 123, 186, 236, 251, 3078, 3216 |
| Bso31I | GGTCTC | 2 cut(s) | 2232, 2924 |
| BsoBI | CYCGRG | 1 cut(s) | 456 |
| Bsp119I | TTCGAA | 1 cut(s) | 3166 |
| Bsp1286I | GDGCHC | 4 cut(s) | 384, 1515, 1751, 3307 |
| Bsp1407I | TGTACA | 3 cut(s) | 3108, 3681, 4000 |
| Bsp19I | CCATGG | 1 cut(s) | 2472 |
| BspANI | GGCC | 8 cut(s) | 65, 75, 123, 186, 236, 251, 3078, 3216 |
| BspDI | ATCGAT | 1 cut(s) | 3121 |
| BspFNI | CGCG | 2 cut(s) | 197, 724 |
| BspHI | TCATGA | 1 cut(s) | 2605 |
| BspMAI | CTGCAG | 3 cut(s) | 739, 989, 2383 |
| BspMI | ACCTGC | 1 cut(s) | 3860 |
| BspPI | GGATC | 7 cut(s) | 596, 1214, 1227, 1912, 1945, 2821, 2834 |
| BspQI | GCTCTTC | 1 cut(s) | 1582 |
| BspT104I | TTCGAA | 1 cut(s) | 3166 |
| BspTI | CTTAAG | 1 cut(s) | 3442 |
| BspTNI | GGTCTC | 2 cut(s) | 2232, 2924 |
| BsrBI | CCGCTC | 1 cut(s) | 2224 |
| BsrDI | GCAATG | 3 cut(s) | 1830, 3885, 3906 |
| BsrFI | RCCGGY | 2 cut(s) | 61, 2799 |
| BsrGI | TGTACA | 3 cut(s) | 3108, 3681, 4000 |
| BsrI | ACTGG | 8 cut(s) | 356, 470, 1773, 1954, 2191, 2399, 2509, 4168 |
| BssAI | RCCGGY | 2 cut(s) | 61, 2799 |
| BssNI | GRCGYC | 1 cut(s) | 113 |
| BssT1I | CCWWGG | 7 cut(s) | 222, 531, 683, 1236, 1997, 2472, 3254 |
| Bst2UI | CCWGG | 9 cut(s) | 127, 372, 770, 1697, 2751, 3090, 3239, 3945, 3973 |
| Bst6I | CTCTTC | 8 cut(s) | 609, 1053, 1398, 1582, 1677, 3255, 3315, 4251 |
| BstACI | GRCGYC | 1 cut(s) | 113 |
| BstAFI | CTTAAG | 1 cut(s) | 3442 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1460, 1864, 4214 |
| BstAUI | TGTACA | 3 cut(s) | 3108, 3681, 4000 |
| BstBAI | YACGTR | 2 cut(s) | 2613, 3617 |
| BstBI | TTCGAA | 1 cut(s) | 3166 |
| BstC8I | GCNNGC | 5 cut(s) | 781, 2451, 2883, 3076, 3723 |
| BstDSI | CCRYGG | 2 cut(s) | 195, 2472 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 3935, 4226 |
| BstFNI | CGCG | 2 cut(s) | 197, 724 |
| BstH2I | RGCGCY | 1 cut(s) | 669 |
| BstHHI | GCGC | 5 cut(s) | 668, 724, 2436, 3141, 3640 |
| BstMAI | GTCTC | 6 cut(s) | 579, 1055, 2166, 2232, 2924, 3687 |
| BstMCI | CGRYCG | 2 cut(s) | 187, 2493 |
| BstNI | CCWGG | 9 cut(s) | 127, 372, 770, 1697, 2751, 3090, 3239, 3945, 3973 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4217 |
| BstSFI | CTRYAG | 5 cut(s) | 735, 985, 1142, 2379, 2511 |
| BstSNI | TACGTA | 1 cut(s) | 2613 |
| BstUI | CGCG | 2 cut(s) | 197, 724 |
| BstV2I | GAAGAC | 5 cut(s) | 2507, 2697, 2734, 4048, 4350 |
| BstX2I | RGATCY | 3 cut(s) | 1219, 1904, 2826 |
| BstYI | RGATCY | 3 cut(s) | 1219, 1904, 2826 |
| BstZI | CGGCCG | 1 cut(s) | 184 |
| Bsu15I | ATCGAT | 1 cut(s) | 3121 |
| BsuI | GTATCC | 4 cut(s) | 475, 499, 3696, 4053 |
| BsuRI | GGCC | 8 cut(s) | 65, 75, 123, 186, 236, 251, 3078, 3216 |
| BsuTUI | ATCGAT | 1 cut(s) | 3121 |
| BtgI | CCRYGG | 2 cut(s) | 195, 2472 |
| BtgZI | GCGATG | 1 cut(s) | 3795 |
| BtrI | CACGTC | 1 cut(s) | 1964 |
| BtsI | GCAGTG | 3 cut(s) | 545, 982, 3716 |
| BveI | ACCTGC | 1 cut(s) | 3860 |
| Cac8I | GCNNGC | 5 cut(s) | 781, 2451, 2883, 3076, 3723 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2819, 3896 |
| CciI | TCATGA | 1 cut(s) | 2605 |
| CfoI | GCGC | 5 cut(s) | 668, 724, 2436, 3141, 3640 |
| Cfr10I | RCCGGY | 2 cut(s) | 61, 2799 |
| Cfr13I | GGNCC | 8 cut(s) | 122, 199, 249, 528, 1582, 2507, 3214, 3533 |
| Cfr42I | CCGCGG | 1 cut(s) | 198 |
| ClaI | ATCGAT | 1 cut(s) | 3121 |
| CseI | GACGC | 1 cut(s) | 3800 |
| CsiI | ACCWGGT | 1 cut(s) | 3971 |
| Csp6I | GTAC | 9 cut(s) | 256, 446, 630, 712, 2093, 2216, 3109, 3682, 4001 |
| CspAI | ACCGGT | 1 cut(s) | 2799 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2905, 2940 |
| CviQI | GTAC | 9 cut(s) | 256, 446, 630, 712, 2093, 2216, 3109, 3682, 4001 |
| EaeI | YGGCCR | 3 cut(s) | 73, 184, 3076 |
| EagI | CGGCCG | 1 cut(s) | 184 |
| Eam1104I | CTCTTC | 8 cut(s) | 609, 1053, 1398, 1582, 1677, 3255, 3315, 4251 |
| EarI | CTCTTC | 8 cut(s) | 609, 1053, 1398, 1582, 1677, 3255, 3315, 4251 |
| EciI | GGCGGA | 4 cut(s) | 130, 152, 181, 301 |
| Ecl136II | GAGCTC | 2 cut(s) | 382, 1749 |
| EclXI | CGGCCG | 1 cut(s) | 184 |
| Eco105I | TACGTA | 1 cut(s) | 2613 |
| Eco130I | CCWWGG | 7 cut(s) | 222, 531, 683, 1236, 1997, 2472, 3254 |
| Eco24I | GRGCYC | 3 cut(s) | 384, 1515, 1751 |
| Eco31I | GGTCTC | 2 cut(s) | 2232, 2924 |
| Eco47I | GGWCC | 5 cut(s) | 199, 528, 1582, 2507, 3533 |
| Eco52I | CGGCCG | 1 cut(s) | 184 |
| Eco53kI | GAGCTC | 2 cut(s) | 382, 1749 |
| Eco57I | CTGAAG | 5 cut(s) | 954, 1005, 1379, 2598, 3258 |
| Eco88I | CYCGRG | 1 cut(s) | 456 |
| EcoICRI | GAGCTC | 2 cut(s) | 382, 1749 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 3935, 4226 |
| EcoRI | GAATTC | 1 cut(s) | 1115 |
| EcoRII | CCWGG | 9 cut(s) | 125, 370, 768, 1695, 2749, 3088, 3237, 3943, 3971 |
| EcoT14I | CCWWGG | 7 cut(s) | 222, 531, 683, 1236, 1997, 2472, 3254 |
| EcoT22I | ATGCAT | 1 cut(s) | 3811 |
| EcoT38I | GRGCYC | 3 cut(s) | 384, 1515, 1751 |
| ErhI | CCWWGG | 7 cut(s) | 222, 531, 683, 1236, 1997, 2472, 3254 |
| Esp3I | CGTCTC | 1 cut(s) | 579 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1579, 1611, 2082, 2114, 3771, 3803 |
| FaqI | GGGAC | 4 cut(s) | 185, 473, 3220, 4109 |
| FauI | CCCGC | 4 cut(s) | 1293, 1860, 2841, 4086 |
| FauNDI | CATATG | 3 cut(s) | 334, 1459, 3863 |
| FbaI | TGATCA | 3 cut(s) | 289, 1405, 2860 |
| FblI | GTMKAC | 3 cut(s) | 207, 963, 2514 |
| FriOI | GRGCYC | 3 cut(s) | 384, 1515, 1751 |
| FspI | TGCGCA | 1 cut(s) | 3639 |
| GlaI | GCGC | 5 cut(s) | 667, 723, 2435, 3140, 3639 |
| GsaI | CCCAGC | 4 cut(s) | 48, 88, 1380, 2557 |
| GsuI | CTGGAG | 4 cut(s) | 116, 1679, 1790, 2772 |
| HaeII | RGCGCY | 1 cut(s) | 669 |
| HaeIII | GGCC | 8 cut(s) | 65, 75, 123, 186, 236, 251, 3078, 3216 |
| HapII | CCGG | 7 cut(s) | 62, 120, 183, 512, 2061, 2465, 2800 |
| HgaI | GACGC | 1 cut(s) | 3800 |
| HhaI | GCGC | 5 cut(s) | 668, 724, 2436, 3141, 3640 |
| Hin1I | GRCGYC | 1 cut(s) | 113 |
| Hin6I | GCGC | 5 cut(s) | 666, 722, 2434, 3139, 3638 |
| HinP1I | GCGC | 5 cut(s) | 666, 722, 2434, 3139, 3638 |
| HincII | GTYRAC | 7 cut(s) | 208, 569, 1472, 3327, 3364, 3516, 3556 |
| HindII | GTYRAC | 7 cut(s) | 208, 569, 1472, 3327, 3364, 3516, 3556 |
| HindIII | AAGCTT | 1 cut(s) | 2126 |
| HpaI | GTTAAC | 1 cut(s) | 3327 |
| HpaII | CCGG | 7 cut(s) | 62, 120, 183, 512, 2061, 2465, 2800 |
| HphI | GGTGA | 7 cut(s) | 274, 1859, 2049, 2249, 2570, 3408, 3834 |
| Hpy99I | CGWCG | 5 cut(s) | 115, 209, 212, 478, 3066 |
| HpyCH4IV | ACGT | 7 cut(s) | 113, 485, 1963, 2612, 3061, 3366, 3616 |
| HpySE526I | ACGT | 7 cut(s) | 113, 485, 1963, 2612, 3061, 3366, 3616 |
| Hsp92I | GRCGYC | 1 cut(s) | 113 |
| HspAI | GCGC | 5 cut(s) | 666, 722, 2434, 3139, 3638 |
| Ksp22I | TGATCA | 3 cut(s) | 289, 1405, 2860 |
| KspAI | GTTAAC | 1 cut(s) | 3327 |
| KspI | CCGCGG | 1 cut(s) | 198 |
| LguI | GCTCTTC | 1 cut(s) | 1582 |
| LmnI | GCTCC | 8 cut(s) | 10, 135, 387, 1005, 2810, 2890, 3946, 4145 |
| MabI | ACCWGGT | 1 cut(s) | 3971 |
| MaeII | ACGT | 7 cut(s) | 113, 485, 1963, 2612, 3061, 3366, 3616 |
| MaeIII | GTNAC | 8 cut(s) | 1387, 1414, 1976, 2401, 3201, 3446, 3617, 3947 |
| MbiI | CCGCTC | 1 cut(s) | 2224 |
| MfeI | CAATTG | 1 cut(s) | 3846 |
| MflI | RGATCY | 3 cut(s) | 1219, 1904, 2826 |
| MhlI | GDGCHC | 4 cut(s) | 384, 1515, 1751, 3307 |
| MlsI | TGGCCA | 1 cut(s) | 75 |
| MluNI | TGGCCA | 1 cut(s) | 75 |
| MlyI | GAGTC | 6 cut(s) | 221, 463, 933, 2040, 3729, 4091 |
| MmeI | TCCRAC | 5 cut(s) | 708, 828, 3591, 3992, 4317 |
| Mox20I | TGGCCA | 1 cut(s) | 75 |
| Mph1103I | ATGCAT | 1 cut(s) | 3811 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3609 |
| MscI | TGGCCA | 1 cut(s) | 75 |
| MslI | CAYNNNNRTG | 3 cut(s) | 842, 948, 2709 |
| Msp20I | TGGCCA | 1 cut(s) | 75 |
| MspA1I | CMGCKG | 2 cut(s) | 197, 1430 |
| MspCI | CTTAAG | 1 cut(s) | 3442 |
| MspI | CCGG | 7 cut(s) | 62, 120, 183, 512, 2061, 2465, 2800 |
| MunI | CAATTG | 1 cut(s) | 3846 |
| Mva1269I | GAATGC | 2 cut(s) | 3174, 3437 |
| MvaI | CCWGG | 9 cut(s) | 127, 372, 770, 1697, 2751, 3090, 3239, 3945, 3973 |
| MvnI | CGCG | 2 cut(s) | 197, 724 |
| NciI | CCSGG | 2 cut(s) | 513, 2061 |
| NcoI | CCATGG | 1 cut(s) | 2472 |
| NdeI | CATATG | 3 cut(s) | 334, 1459, 3863 |
| NmeAIII | GCCGAG | 1 cut(s) | 169 |
| NmuCI | GTSAC | 4 cut(s) | 1387, 2401, 3617, 3947 |
| NsbI | TGCGCA | 1 cut(s) | 3639 |
| NsiI | ATGCAT | 1 cut(s) | 3811 |
| NspV | TTCGAA | 1 cut(s) | 3166 |
| PagI | TCATGA | 1 cut(s) | 2605 |
| PciSI | GCTCTTC | 1 cut(s) | 1582 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 482, 3067, 3076 |
| PctI | GAATGC | 2 cut(s) | 3174, 3437 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3609 |
| PflFI | GACNNNGTC | 2 cut(s) | 472, 2030 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3244 |
| PinAI | ACCGGT | 1 cut(s) | 2799 |
| PleI | GAGTC | 6 cut(s) | 220, 463, 933, 2039, 3729, 4091 |
| PpsI | GAGTC | 6 cut(s) | 220, 463, 933, 2039, 3729, 4091 |
| Ppu21I | YACGTR | 2 cut(s) | 2613, 3617 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4217 |
| PshBI | ATTAAT | 1 cut(s) | 2589 |
| PsiI | TTATAA | 1 cut(s) | 2997 |
| Psp124BI | GAGCTC | 2 cut(s) | 384, 1751 |
| Psp6I | CCWGG | 9 cut(s) | 125, 370, 768, 1695, 2749, 3088, 3237, 3943, 3971 |
| PspFI | CCCAGC | 4 cut(s) | 44, 84, 1376, 2553 |
| PspGI | CCWGG | 9 cut(s) | 125, 370, 768, 1695, 2749, 3088, 3237, 3943, 3971 |
| PspPI | GGNCC | 8 cut(s) | 122, 199, 249, 528, 1582, 2507, 3214, 3533 |
| PstI | CTGCAG | 3 cut(s) | 739, 989, 2383 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2819, 3896 |
| PsuI | RGATCY | 3 cut(s) | 1219, 1904, 2826 |
| PsyI | GACNNNGTC | 2 cut(s) | 472, 2030 |
| PvuII | CAGCTG | 1 cut(s) | 1430 |
| RsaI | GTAC | 9 cut(s) | 257, 447, 631, 713, 2094, 2217, 3110, 3683, 4002 |
| RsaNI | GTAC | 9 cut(s) | 256, 446, 630, 712, 2093, 2216, 3109, 3682, 4001 |
| RseI | CAYNNNNRTG | 3 cut(s) | 842, 948, 2709 |
| SacI | GAGCTC | 2 cut(s) | 384, 1751 |
| SacII | CCGCGG | 1 cut(s) | 198 |
| SalI | GTCGAC | 1 cut(s) | 206 |
| SapI | GCTCTTC | 1 cut(s) | 1582 |
| Sau96I | GGNCC | 8 cut(s) | 122, 199, 249, 528, 1582, 2507, 3214, 3533 |
| SchI | GAGTC | 6 cut(s) | 221, 463, 933, 2040, 3729, 4091 |
| SduI | GDGCHC | 4 cut(s) | 384, 1515, 1751, 3307 |
| SexAI | ACCWGGT | 1 cut(s) | 3971 |
| SfcI | CTRYAG | 5 cut(s) | 735, 985, 1142, 2379, 2511 |
| Sfr303I | CCGCGG | 1 cut(s) | 198 |
| SfuI | TTCGAA | 1 cut(s) | 3166 |
| SgrBI | CCGCGG | 1 cut(s) | 198 |
| SgrDI | CGTCGACG | 1 cut(s) | 206 |
| SinI | GGWCC | 5 cut(s) | 199, 528, 1582, 2507, 3533 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 842, 948, 2709 |
| SmlI | CTYRAG | 4 cut(s) | 389, 800, 2417, 3442 |
| SmoI | CTYRAG | 4 cut(s) | 389, 800, 2417, 3442 |
| SnaBI | TACGTA | 1 cut(s) | 2613 |
| SpeI | ACTAGT | 1 cut(s) | 3113 |
| SspI | AATATT | 2 cut(s) | 2923, 3402 |
| SstI | GAGCTC | 2 cut(s) | 384, 1751 |
| StyI | CCWWGG | 7 cut(s) | 222, 531, 683, 1236, 1997, 2472, 3254 |
| TaiI | ACGT | 7 cut(s) | 116, 488, 1966, 2615, 3064, 3369, 3619 |
| TaqII | GACCGA | 2 cut(s) | 1599, 2507 |
| TatI | WGTACW | 6 cut(s) | 445, 629, 2215, 3108, 3681, 4000 |
| TauI | GCSGC | 4 cut(s) | 25, 168, 197, 2724 |
| TseFI | GTSAC | 4 cut(s) | 1387, 2401, 3617, 3947 |
| Tsp45I | GTSAC | 4 cut(s) | 1387, 2401, 3617, 3947 |
| TspGWI | ACGGA | 3 cut(s) | 462, 3329, 4226 |
| Tth111I | GACNNNGTC | 2 cut(s) | 472, 2030 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3244 |
| Vha464I | CTTAAG | 1 cut(s) | 3442 |
| VpaK11BI | GGWCC | 5 cut(s) | 199, 528, 1582, 2507, 3533 |
| VspI | ATTAAT | 1 cut(s) | 2589 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 3935, 4226 |
| XapI | RAATTY | 9 cut(s) | 851, 1115, 1183, 1793, 2162, 2644, 2763, 3093, 4034 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1961, 4160 |
| XmiI | GTMKAC | 3 cut(s) | 207, 963, 2514 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3609 |
| ZraI | GACGTC | 1 cut(s) | 114 |
| Zsp2I | ATGCAT | 1 cut(s) | 3811 |