MD16G1005800.v1.1

sphingoid long-chain bases kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
458715 .. 460436
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1005800.v1.1.491

Sequence Viewer

Length: 1110 bp
ATGTTAATTCATCTTGAACTGGTTGCAGTGTTGGAGCTCTCTGAGAAATACCAAAAGCGCTTTGGTCCTCTTCGTTATTTTGTTGCTGGATTTCTCAAATTCTTGTGCCTACCAAAGTACAGCTATGAAGTTGAGTATCTTCCAGCATTAAAAGAGGACATCTCAGAAAGGGAAGTAGTTGACATGTCCGAACTATACACAGACATTATGAGGAGATCAAACACAGATGGGATTCCAAGAGCCTCTAGTTTGTCAAGTATCGACTCCATCATGACTCCTACTCGAATGTCTGGTGGAGACTTGGATACAGCCTGCAGTAGCAATCATGCTAGCATTGAACCATCTGAGTACGTACGTGGCCTAGATCCGAAATCAAAACGACTTTCAATGGGAAGAAGCAATGTAACTGCAGAGCCAGAAGTTATTCATCCTCAGCTTCCTCTGTCAACGACTCCAAATTGGCCAAGGACCCGCTCTAAGTCGAGAGCAGATAAAGGATGGACTGGATTGACAGCCACACATGATGCCTCCAGATCTTCTTGGTGCAATGCTGGAACAAACGATAAAGAGGATATATCATCAACTCTGTCTGATCCAGGTCCAATTTGGGATGCGGAACCCAAGTGGGACAGTGAACCTAATTGGGATGTGGAAAATCCTATTGAATTACCAGGGCCATCAGATGATGTGGAAGCAGGAAGAAAGGAAGTTGTTCCTAGGTATGAAGATAAATGGGTTGTTACTAAGGGTCAATTCCTTGGTATTCTGGTTTGCAATCATGCTTGCAGAACCGTTCAGAGTTCCCAAGTGGTGGCGCCAAAAGCTGAGCATGATGACAACACCTTGGATTTGATCCTAGTTCATGGAAGTGGGCGGTTAAGGCTGTTGAGATTTTTCATGCTACTGCAGATGGGTAGACACCTTTCACTGCCATACGTGGAAAATGTCAAGGTGAAGTCAGTGAAGATTAAGGTGTCAGGAAAGCACACCCACAATGGTTGTGGTATTGATGGAGAGCTTTTTCCCCTCAACGGGCCAGTCATTTCTTCTTTGCTTCCAGAACAGTGCAGACTTATTGGCCGCTCCCTTACAGTTAACCCTCACGTCTGA

Protein Analysis

370

Amino Acids

41.15

Weight (kDa)

6.15

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CERK_C PF19280 237 - 329 2.3e-06 Ceramide kinase C-terminal domain
YegS_C PF19279 267 - 359 9.1e-12 YegS C-terminal NAD kinase beta sandwich-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 814
AccB7I CCANNNNNTGG 1 cut(s) 811
AccBSI CCGCTC 2 cut(s) 474, 1083
AccI GTMKAC 1 cut(s) 916
AciI CCGC 4 cut(s) 472, 614, 874, 1081
AclWI GGATC 3 cut(s) 359, 587, 847
AcoI YGGCCR 2 cut(s) 461, 1078
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 815
AfaI GTAC 3 cut(s) 119, 350, 354
AfeI AGCGCT 1 cut(s) 59
AfiI CCNNNNNNNGG 3 cut(s) 811, 1031, 1032
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 4 cut(s) 17, 338, 387, 665
AjiI CACGTC 1 cut(s) 1105
AjnI CCWGG 2 cut(s) 595, 670
AluBI AGCT 5 cut(s) 37, 123, 436, 824, 1018
AluI AGCT 5 cut(s) 37, 123, 436, 824, 1018
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 3 cut(s) 359, 587, 847
Aor51HI AGCGCT 1 cut(s) 59
AoxI GGCC 5 cut(s) 358, 461, 674, 1034, 1078
ApoI RAATTY 1 cut(s) 98
Asp700I GAANNNNTTC 2 cut(s) 423, 711
AspA2I CCTAGG 1 cut(s) 716
AspLEI GCGC 2 cut(s) 60, 817
AspS9I GGNCC 5 cut(s) 65, 468, 599, 674, 1034
AsuHPI GGTGA 1 cut(s) 964
AsuNHI GCTAGC 1 cut(s) 329
AvaII GGWCC 3 cut(s) 65, 468, 599
AvrII CCTAGG 1 cut(s) 716
BalI TGGCCA 1 cut(s) 463
BanI GGYRCC 1 cut(s) 814
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 432
BccI CCATC 7 cut(s) 221, 275, 349, 492, 685, 904, 1004
BciT130I CCWGG 2 cut(s) 597, 672
BciVI GTATCC 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 5 cut(s) 246, 330, 362, 717, 857
BfmI CTRYAG 3 cut(s) 313, 408, 905
BfoI RGCGCY 2 cut(s) 61, 818
BfuI GTATCC 1 cut(s) 298
BglII AGATCT 1 cut(s) 533
BisI GCNGC 1 cut(s) 1081
BlnI CCTAGG 1 cut(s) 716
BlpI GCTNAGC 1 cut(s) 825
BlsI GCNGC 1 cut(s) 1082
Bme1390I CCNGG 2 cut(s) 597, 672
Bme18I GGWCC 3 cut(s) 65, 468, 599
BmgBI CACGTC 1 cut(s) 1105
BmgT120I GGNCC 5 cut(s) 65, 468, 599, 674, 1034
BmiI GGNNCC 3 cut(s) 470, 618, 816
BmrFI CCNGG 2 cut(s) 597, 672
BmsI GCATC 2 cut(s) 514, 601
BmtI GCTAGC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BpmI CTGGAG 1 cut(s) 514
Bpu10I CCTNAGC 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 825
BsaAI YACGTR 3 cut(s) 352, 356, 937
BsaHI GRCGYC 1 cut(s) 815
BsaJI CCNNGG 5 cut(s) 464, 671, 716, 757, 843
Bsc4I CCNNNNNNNGG 3 cut(s) 811, 1031, 1032
Bse1I ACTGG 3 cut(s) 24, 508, 1037
Bse3DI GCAATG 2 cut(s) 406, 553
BseBI CCWGG 2 cut(s) 597, 672
BseDI CCNNGG 5 cut(s) 464, 671, 716, 757, 843
BseGI GGATG 4 cut(s) 427, 503, 616, 652
BseLI CCNNNNNNNGG 3 cut(s) 811, 1031, 1032
BseMI GCAATG 2 cut(s) 406, 553
BseMII CTCAG 5 cut(s) 33, 177, 336, 446, 816
BseNI ACTGG 3 cut(s) 24, 508, 1037
BseRI GAGGAG 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 1087
BshFI GGCC 5 cut(s) 360, 463, 676, 1036, 1080
BshNI GGYRCC 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 39
BsiWI CGTACG 1 cut(s) 352
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 3 cut(s) 811, 1031, 1032
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 5 cut(s) 360, 463, 676, 1036, 1080
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 5 cut(s) 215, 364, 533, 592, 852
Bsp1720I GCTNAGC 1 cut(s) 825
BspACI CCGC 4 cut(s) 472, 614, 874, 1081
BspANI GGCC 5 cut(s) 360, 463, 676, 1036, 1080
BspCNI CTCAG 5 cut(s) 34, 176, 337, 445, 817
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 470, 618, 816
BspMAI CTGCAG 3 cut(s) 317, 412, 909
BspOI GCTAGC 1 cut(s) 333
BspPI GGATC 3 cut(s) 359, 587, 847
BspT107I GGYRCC 1 cut(s) 814
BsrBI CCGCTC 2 cut(s) 474, 1083
BsrDI GCAATG 2 cut(s) 406, 553
BsrI ACTGG 3 cut(s) 24, 508, 1037
BssECI CCNNGG 5 cut(s) 464, 671, 716, 757, 843
BssMI GATC 5 cut(s) 215, 364, 533, 592, 852
BssNI GRCGYC 1 cut(s) 815
BssT1I CCWWGG 4 cut(s) 464, 716, 757, 843
Bst2UI CCWGG 2 cut(s) 597, 672
Bst4CI ACNGT 4 cut(s) 632, 793, 1065, 1093
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 815
BstBAI YACGTR 3 cut(s) 352, 356, 937
BstC8I GCNNGC 3 cut(s) 313, 331, 784
BstDEI CTNAG 7 cut(s) 42, 163, 345, 432, 477, 744, 825
BstF5I GGATG 4 cut(s) 427, 503, 616, 652
BstH2I RGCGCY 2 cut(s) 61, 818
BstHHI GCGC 2 cut(s) 60, 817
BstKTI GATC 5 cut(s) 218, 367, 536, 595, 855
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 5 cut(s) 215, 364, 533, 592, 852
BstMWI GCNNNNNNNGC 2 cut(s) 821, 880
BstNI CCWGG 2 cut(s) 597, 672
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 595, 670
BstSFI CTRYAG 3 cut(s) 313, 408, 905
BstSNI TACGTA 1 cut(s) 352
BstX2I RGATCY 2 cut(s) 364, 533
BstYI RGATCY 2 cut(s) 364, 533
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 5 cut(s) 360, 463, 676, 1036, 1080
BtrI CACGTC 1 cut(s) 1105
BtsCI GGATG 4 cut(s) 427, 503, 616, 652
BtsI GCAGTG 2 cut(s) 33, 926
BtsIMutI CAGTG 5 cut(s) 33, 637, 926, 966, 1070
Cac8I GCNNGC 3 cut(s) 313, 331, 784
CciI TCATGA 1 cut(s) 270
CfoI GCGC 2 cut(s) 60, 817
Cfr13I GGNCC 5 cut(s) 65, 468, 599, 674, 1034
Csp6I GTAC 3 cut(s) 118, 349, 353
CspCI CAANNNNNGTGG 4 cut(s) 980, 982, 1015, 1017
CviAII CATG 8 cut(s) 184, 271, 326, 521, 779, 830, 863, 898
CviQI GTAC 3 cut(s) 118, 349, 353
DdeI CTNAG 7 cut(s) 42, 163, 345, 432, 477, 744, 825
DinI GGCGCC 1 cut(s) 816
DpnI GATC 5 cut(s) 217, 366, 535, 594, 854
DpnII GATC 5 cut(s) 215, 364, 533, 592, 852
EaeI YGGCCR 2 cut(s) 461, 1078
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 37
Eco105I TACGTA 1 cut(s) 352
Eco130I CCWWGG 4 cut(s) 464, 716, 757, 843
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 3 cut(s) 65, 468, 599
Eco47III AGCGCT 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 468
EcoRII CCWGG 2 cut(s) 595, 670
EcoT14I CCWWGG 4 cut(s) 464, 716, 757, 843
EcoT38I GRGCYC 1 cut(s) 39
EgeI GGCGCC 1 cut(s) 816
EheI GGCGCC 1 cut(s) 816
ErhI CCWWGG 4 cut(s) 464, 716, 757, 843
FaeI CATG 8 cut(s) 187, 274, 329, 524, 782, 833, 866, 901
FaqI GGGAC 1 cut(s) 641
FatI CATG 8 cut(s) 183, 270, 325, 520, 778, 829, 862, 897
FauI CCCGC 1 cut(s) 479
FblI GTMKAC 1 cut(s) 916
Fnu4HI GCNGC 1 cut(s) 1081
FokI GGATG 4 cut(s) 414, 510, 623, 659
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 1081
FspBI CTAG 5 cut(s) 246, 330, 362, 717, 857
GlaI GCGC 2 cut(s) 59, 816
GluI GCNGC 1 cut(s) 1081
GsuI CTGGAG 1 cut(s) 514
HaeII RGCGCY 2 cut(s) 61, 818
HaeIII GGCC 5 cut(s) 360, 463, 676, 1036, 1080
HhaI GCGC 2 cut(s) 60, 817
Hin1I GRCGYC 1 cut(s) 815
Hin1II CATG 8 cut(s) 187, 274, 329, 524, 782, 833, 866, 901
Hin6I GCGC 2 cut(s) 58, 815
HinP1I GCGC 2 cut(s) 58, 815
HincII GTYRAC 3 cut(s) 181, 447, 1096
HindII GTYRAC 3 cut(s) 181, 447, 1096
HinfI GANTC 4 cut(s) 232, 263, 274, 451
HpaI GTTAAC 1 cut(s) 1096
HphI GGTGA 1 cut(s) 964
Hpy166II GTNNAC 5 cut(s) 181, 447, 635, 917, 1096
Hpy188I TCNGA 9 cut(s) 43, 166, 190, 346, 369, 592, 682, 798, 1109
Hpy188III TCNNGA 6 cut(s) 14, 271, 483, 531, 978, 1058
Hpy8I GTNNAC 5 cut(s) 181, 447, 635, 917, 1096
HpyCH4III ACNGT 4 cut(s) 632, 793, 1065, 1093
HpyCH4IV ACGT 4 cut(s) 351, 355, 936, 1104
HpyCH4V TGCA 8 cut(s) 26, 315, 410, 546, 774, 786, 907, 1068
HpyF10VI GCNNNNNNNGC 2 cut(s) 821, 880
HpyF3I CTNAG 7 cut(s) 42, 163, 345, 432, 477, 744, 825
HpySE526I ACGT 4 cut(s) 351, 355, 936, 1104
Hsp92I GRCGYC 1 cut(s) 815
Hsp92II CATG 8 cut(s) 187, 274, 329, 524, 782, 833, 866, 901
HspAI GCGC 2 cut(s) 58, 815
KasI GGCGCC 1 cut(s) 814
KspAI GTTAAC 1 cut(s) 1096
Kzo9I GATC 5 cut(s) 215, 364, 533, 592, 852
LmnI GCTCC 2 cut(s) 34, 1088
LweI GCATC 2 cut(s) 514, 601
MaeI CTAG 5 cut(s) 246, 330, 362, 717, 857
MaeII ACGT 4 cut(s) 351, 355, 936, 1104
MaeIII GTNAC 2 cut(s) 403, 739
MalI GATC 5 cut(s) 217, 366, 535, 594, 854
MbiI CCGCTC 2 cut(s) 474, 1083
MboI GATC 5 cut(s) 215, 364, 533, 592, 852
MboII GAAGA 8 cut(s) 62, 131, 405, 528, 711, 737, 976, 1038
MflI RGATCY 2 cut(s) 364, 533
MhlI GDGCHC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 463
MluCI AATT 7 cut(s) 6, 98, 457, 603, 640, 665, 752
MluNI TGGCCA 1 cut(s) 463
Mly113I GGCGCC 1 cut(s) 815
MlyI GAGTC 3 cut(s) 257, 268, 445
MmeI TCCRAC 1 cut(s) 12
Mox20I TGGCCA 1 cut(s) 463
MroXI GAANNNNTTC 2 cut(s) 423, 711
MscI TGGCCA 1 cut(s) 463
MseI TTAA 5 cut(s) 5, 149, 878, 969, 1095
MslI CAYNNNNRTG 1 cut(s) 867
Msp20I TGGCCA 1 cut(s) 463
MspR9I CCNGG 2 cut(s) 597, 672
MvaI CCWGG 2 cut(s) 597, 672
MwoI GCNNNNNNNGC 2 cut(s) 821, 880
NarI GGCGCC 1 cut(s) 815
NdeII GATC 5 cut(s) 215, 364, 533, 592, 852
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 8 cut(s) 187, 274, 329, 524, 782, 833, 866, 901
NlaIV GGNNCC 3 cut(s) 470, 618, 816
NspI RCATGY 1 cut(s) 187
PagI TCATGA 1 cut(s) 270
PciI ACATGT 1 cut(s) 183
PdmI GAANNNNTTC 2 cut(s) 423, 711
PfeI GAWTC 1 cut(s) 232
Pfl23II CGTACG 1 cut(s) 352
PflMI CCANNNNNTGG 1 cut(s) 811
PkrI GCNGC 1 cut(s) 1082
PleI GAGTC 3 cut(s) 257, 268, 445
PluTI GGCGCC 1 cut(s) 818
PpsI GAGTC 3 cut(s) 257, 268, 445
Ppu21I YACGTR 3 cut(s) 352, 356, 937
PpuMI RGGWCCY 1 cut(s) 468
PscI ACATGT 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 595, 670
PspGI CCWGG 2 cut(s) 595, 670
PspLI CGTACG 1 cut(s) 352
PspN4I GGNNCC 3 cut(s) 470, 618, 816
PspPI GGNCC 5 cut(s) 65, 468, 599, 674, 1034
PspPPI RGGWCCY 1 cut(s) 468
PstI CTGCAG 3 cut(s) 317, 412, 909
PsuI RGATCY 2 cut(s) 364, 533
RsaI GTAC 3 cut(s) 119, 350, 354
RsaNI GTAC 3 cut(s) 118, 349, 353
RseI CAYNNNNRTG 1 cut(s) 867
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 5 cut(s) 5, 149, 878, 969, 1095
SatI GCNGC 1 cut(s) 1081
Sau3AI GATC 5 cut(s) 215, 364, 533, 592, 852
Sau96I GGNCC 5 cut(s) 65, 468, 599, 674, 1034
SchI GAGTC 3 cut(s) 257, 268, 445
ScrFI CCNGG 2 cut(s) 597, 672
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 2 cut(s) 514, 601
SfcI CTRYAG 3 cut(s) 313, 408, 905
SfoI GGCGCC 1 cut(s) 816
SinI GGWCC 3 cut(s) 65, 468, 599
SmiMI CAYNNNNRTG 1 cut(s) 867
SnaBI TACGTA 1 cut(s) 352
Sse9I AATT 7 cut(s) 6, 98, 457, 603, 640, 665, 752
SsiI CCGC 4 cut(s) 472, 614, 874, 1081
SspDI GGCGCC 1 cut(s) 814
SspMI CTAG 5 cut(s) 246, 330, 362, 717, 857
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 2 cut(s) 595, 670
StyI CCWWGG 4 cut(s) 464, 716, 757, 843
TaaI ACNGT 4 cut(s) 632, 793, 1065, 1093
TaiI ACGT 4 cut(s) 354, 358, 939, 1107
TaqI TCGA 3 cut(s) 261, 283, 482
TasI AATT 7 cut(s) 6, 98, 457, 603, 640, 665, 752
TatI WGTACW 1 cut(s) 117
TauI GCSGC 1 cut(s) 1083
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 5 cut(s) 5, 149, 878, 969, 1095
Tru9I TTAA 5 cut(s) 5, 149, 878, 969, 1095
TscAI CASTG 5 cut(s) 33, 637, 933, 966, 1070
TspDTI ATGAA 5 cut(s) 141, 416, 738, 851, 886
TspRI CASTG 5 cut(s) 33, 637, 933, 966, 1070
Van91I CCANNNNNTGG 1 cut(s) 811
VpaK11BI GGWCC 3 cut(s) 65, 468, 599
XapI RAATTY 1 cut(s) 98
XceI RCATGY 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 3 cut(s) 59, 603, 998
XmaJI CCTAGG 1 cut(s) 716
XmiI GTMKAC 1 cut(s) 916
XmnI GAANNNNTTC 2 cut(s) 423, 711
XspI CTAG 5 cut(s) 246, 330, 362, 717, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.