Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00002749

Orthogroup ID

OG0005278

Physical Location & Seq

Genomic Coordinates Forward (+)

75996 .. 77000

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom2749g00120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGAAGGAGCAATGTAACTGCAGAGCCAGAAGTTATTCATCCTCAGCTTCCTCTGTCAACAACTCCAAATTGGCCAAGGACCCGCTCTAAGTCGAGAGCTGATAAAGGATGGACTGGATTGACAGCCACACATGATGCCTCCAGCGATCGATCTTCTTGGTGCAATGCTGGAACAAACGATAAAGAGGATATATCATCAACTCTGTCTGATCCAGGTCCAATTTGGGATGCGGAACCCAAGTGGGACAGTGAACCTAATTGGGATGTGGAAAATCCTATCGAATTACCAGGGCCATCAGATGATGTGGAAGCAGGAAGAAAGGAAGTTGTTCCTAGGTATGAAGATAAATGGGTTGTTACTAAGGGTCAATTCCTTGGTATTCTGGTTTGCAATCATGCTTGCAGAACTGTTCAGAGTTCCCAAGTGGTGGCGCCAAAAGCTGAGCATGATGATAACACCTTGGATTTGATCCTAGTTCATGGAAGTGGGCGGTTAAGGCTGTTGAGATTTTTCATGCTACTGCAGATGGGTAGACACCTTTCACTGCCATACGTGGAAAATGTCAAGGTGAAGTCAGTGAAGATTAAGGTGTCAGGAAAGCACACCCACAATGGTTGCGGTATTGATGGAGAGCTTTTTCCACTCAACGGGCAAGTCATTTCTTCTTTGCTTCCAGAACAGTGCAGACTTATTGGCCGCTCCCTTACAGTTAACCCTCATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0017050 GO:0030148 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046467 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

243

Amino Acids

26.78

Weight (kDa)

6.3

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23450 AT5G23450 AT5G23450 AT5G23450 AT5G23450
fragaria_vesca	FvH4_4g37380 FvH4_4g37380 FvH4_4g37380
malus_domestica	MD13G1000100.v1.1 MD16G1005700.v1.1 MD16G1005800.v1.1
prunus_persica	Prupe.1G584800_v2.0.a1
pyrus_communis	pycom13g00010 pycom2749g00100 pycom2749g00120
rosa_chinensis	RchiOBHm_Chr4g0447291
rosa_laevigata	RLG00000005589
rosa_multiflora	Rmu_co8061930.1_g000001 Rmu_sc0017601.1_g000001 Rmu_ssc0000396.1_g000006
rosa_roxburghii	Rroxscaffold_5G00387670
rosa_rugosa	Rorug04G0379600 Rorug04G0379600 Rorug04G0379700
rosa_samantha	Rh4AG440900 Rh4BG450000 Rh4CG467100 Rh4DG448400
rosa_wichuraiana	Rw4G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	433
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccBSI	CCGCTC	2 cut(s)	87, 702
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	5 cut(s)	85, 233, 493, 621, 700
AclWI	GGATC	2 cut(s)	206, 466
AcoI	YGGCCR	2 cut(s)	74, 697
AcyI	GRCGYC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	430, 650
AjnI	CCWGG	2 cut(s)	214, 289
AluBI	AGCT	4 cut(s)	49, 101, 443, 637
AluI	AGCT	4 cut(s)	49, 101, 443, 637
AlwI	GGATC	2 cut(s)	206, 466
AoxI	GGCC	3 cut(s)	74, 293, 697
Asp700I	GAANNNNTTC	2 cut(s)	36, 330
AspA2I	CCTAGG	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	3 cut(s)	81, 218, 293
AsuHPI	GGTGA	1 cut(s)	583
AvaII	GGWCC	2 cut(s)	81, 218
AvrII	CCTAGG	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	433
BbvCI	CCTCAGC	1 cut(s)	45
BccI	CCATC	4 cut(s)	105, 304, 523, 623
BciT130I	CCWGG	2 cut(s)	216, 291
BfaI	CTAG	2 cut(s)	336, 476
BfmI	CTRYAG	2 cut(s)	21, 524
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	1 cut(s)	700
BlnI	CCTAGG	1 cut(s)	335
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	701
Bme1390I	CCNGG	2 cut(s)	216, 291
Bme18I	GGWCC	2 cut(s)	81, 218
BmgT120I	GGNCC	3 cut(s)	81, 218, 293
BmiI	GGNNCC	3 cut(s)	83, 237, 435
BmrFI	CCNGG	2 cut(s)	216, 291
BmsI	GCATC	2 cut(s)	127, 220
BpmI	CTGGAG	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	444
Bsa29I	ATCGAT	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	556
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	5 cut(s)	77, 290, 335, 376, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 650
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	2 cut(s)	19, 172
BseBI	CCWGG	2 cut(s)	216, 291
BseCI	ATCGAT	1 cut(s)	151
BseDI	CCNNGG	5 cut(s)	77, 290, 335, 376, 462
BseGI	GGATG	4 cut(s)	40, 116, 235, 271
BseLI	CCNNNNNNNGG	2 cut(s)	430, 650
BseMI	GCAATG	2 cut(s)	19, 172
BseMII	CTCAG	2 cut(s)	59, 435
BseNI	ACTGG	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	706
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	3 cut(s)	76, 295, 699
BshNI	GGYRCC	1 cut(s)	433
BshVI	ATCGAT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	430, 650
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	76, 295, 699
Bsp143I	GATC	4 cut(s)	148, 152, 211, 471
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	5 cut(s)	85, 233, 493, 621, 700
BspANI	GGCC	3 cut(s)	76, 295, 699
BspCNI	CTCAG	2 cut(s)	58, 436
BspDI	ATCGAT	1 cut(s)	151
BspLI	GGNNCC	3 cut(s)	83, 237, 435
BspMAI	CTGCAG	2 cut(s)	25, 528
BspPI	GGATC	2 cut(s)	206, 466
BspT107I	GGYRCC	1 cut(s)	433
BsrBI	CCGCTC	2 cut(s)	87, 702
BsrDI	GCAATG	2 cut(s)	19, 172
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	5 cut(s)	77, 290, 335, 376, 462
BssMI	GATC	4 cut(s)	148, 152, 211, 471
BssNI	GRCGYC	1 cut(s)	434
BssT1I	CCWWGG	4 cut(s)	77, 335, 376, 462
Bst2UI	CCWGG	2 cut(s)	216, 291
Bst4CI	ACNGT	4 cut(s)	251, 412, 684, 712
BstACI	GRCGYC	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	556
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	4 cut(s)	45, 90, 363, 444
BstF5I	GGATG	4 cut(s)	40, 116, 235, 271
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	4 cut(s)	151, 155, 214, 474
BstMBI	GATC	4 cut(s)	148, 152, 211, 471
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 499
BstNI	CCWGG	2 cut(s)	216, 291
BstSCI	CCNGG	2 cut(s)	214, 289
BstSFI	CTRYAG	2 cut(s)	21, 524
Bsu15I	ATCGAT	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	76, 295, 699
BsuTUI	ATCGAT	1 cut(s)	151
BtsCI	GGATG	4 cut(s)	40, 116, 235, 271
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	4 cut(s)	256, 545, 585, 689
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	3 cut(s)	81, 218, 293
ClaI	ATCGAT	1 cut(s)	151
CspCI	CAANNNNNGTGG	2 cut(s)	599, 634
CviAII	CATG	6 cut(s)	134, 398, 449, 482, 517, 722
DdeI	CTNAG	4 cut(s)	45, 90, 363, 444
DinI	GGCGCC	1 cut(s)	435
DpnI	GATC	4 cut(s)	150, 154, 213, 473
DpnII	GATC	4 cut(s)	148, 152, 211, 471
EaeI	YGGCCR	2 cut(s)	74, 697
Eco130I	CCWWGG	4 cut(s)	77, 335, 376, 462
Eco47I	GGWCC	2 cut(s)	81, 218
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	214, 289
EcoT14I	CCWWGG	4 cut(s)	77, 335, 376, 462
EgeI	GGCGCC	1 cut(s)	435
EheI	GGCGCC	1 cut(s)	435
ErhI	CCWWGG	4 cut(s)	77, 335, 376, 462
FaeI	CATG	6 cut(s)	137, 401, 452, 485, 520, 725
FaiI	YATR	9 cut(s)	135, 194, 342, 399, 450, 483, 518, 553, 723
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	6 cut(s)	133, 397, 448, 481, 516, 721
FauI	CCCGC	1 cut(s)	92
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	700
FokI	GGATG	4 cut(s)	27, 123, 242, 278
Fsp4HI	GCNGC	1 cut(s)	700
FspBI	CTAG	2 cut(s)	336, 476
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	700
GsuI	CTGGAG	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	3 cut(s)	76, 295, 699
HhaI	GCGC	1 cut(s)	436
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	6 cut(s)	137, 401, 452, 485, 520, 725
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	2 cut(s)	60, 715
HindII	GTYRAC	2 cut(s)	60, 715
HpaI	GTTAAC	1 cut(s)	715
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	4 cut(s)	60, 254, 536, 715
Hpy188I	TCNGA	4 cut(s)	211, 301, 417, 728
Hpy188III	TCNNGA	3 cut(s)	96, 597, 677
Hpy8I	GTNNAC	4 cut(s)	60, 254, 536, 715
HpyCH4III	ACNGT	4 cut(s)	251, 412, 684, 712
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	6 cut(s)	23, 165, 393, 405, 526, 687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 499
HpyF3I	CTNAG	4 cut(s)	45, 90, 363, 444
HpySE526I	ACGT	1 cut(s)	555
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	6 cut(s)	137, 401, 452, 485, 520, 725
HspAI	GCGC	1 cut(s)	434
KasI	GGCGCC	1 cut(s)	433
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	148, 152, 211, 471
LmnI	GCTCC	2 cut(s)	9, 707
LweI	GCATC	2 cut(s)	127, 220
MaeI	CTAG	2 cut(s)	336, 476
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	2 cut(s)	16, 358
MalI	GATC	4 cut(s)	150, 154, 213, 473
MbiI	CCGCTC	2 cut(s)	87, 702
MboI	GATC	4 cut(s)	148, 152, 211, 471
MboII	GAAGA	5 cut(s)	147, 330, 356, 595, 657
MlsI	TGGCCA	1 cut(s)	76
MluCI	AATT	5 cut(s)	70, 222, 259, 284, 371
MluNI	TGGCCA	1 cut(s)	76
Mly113I	GGCGCC	1 cut(s)	434
MnlI	CCTC	5 cut(s)	54, 63, 151, 181, 729
Mox20I	TGGCCA	1 cut(s)	76
MroXI	GAANNNNTTC	2 cut(s)	36, 330
MscI	TGGCCA	1 cut(s)	76
MseI	TTAA	3 cut(s)	497, 588, 714
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	216, 291
MvaI	CCWGG	2 cut(s)	216, 291
MwoI	GCNNNNNNNGC	2 cut(s)	440, 499
NarI	GGCGCC	1 cut(s)	434
NdeII	GATC	4 cut(s)	148, 152, 211, 471
NlaIII	CATG	6 cut(s)	137, 401, 452, 485, 520, 725
NlaIV	GGNNCC	3 cut(s)	83, 237, 435
PdmI	GAANNNNTTC	2 cut(s)	36, 330
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	1 cut(s)	701
Ple19I	CGATCG	1 cut(s)	151
PluTI	GGCGCC	1 cut(s)	437
Ppu21I	YACGTR	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	214, 289
PspGI	CCWGG	2 cut(s)	214, 289
PspN4I	GGNNCC	3 cut(s)	83, 237, 435
PspPI	GGNCC	3 cut(s)	81, 218, 293
PspPPI	RGGWCCY	1 cut(s)	81
PstI	CTGCAG	2 cut(s)	25, 528
PvuI	CGATCG	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	497, 588, 714
SatI	GCNGC	1 cut(s)	700
Sau3AI	GATC	4 cut(s)	148, 152, 211, 471
Sau96I	GGNCC	3 cut(s)	81, 218, 293
ScrFI	CCNGG	2 cut(s)	216, 291
SfaNI	GCATC	2 cut(s)	127, 220
SfcI	CTRYAG	2 cut(s)	21, 524
SfoI	GGCGCC	1 cut(s)	435
SinI	GGWCC	2 cut(s)	81, 218
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	5 cut(s)	70, 222, 259, 284, 371
SsiI	CCGC	5 cut(s)	85, 233, 493, 621, 700
SspDI	GGCGCC	1 cut(s)	433
SspMI	CTAG	2 cut(s)	336, 476
StyD4I	CCNGG	2 cut(s)	214, 289
StyI	CCWWGG	4 cut(s)	77, 335, 376, 462
TaaI	ACNGT	4 cut(s)	251, 412, 684, 712
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	3 cut(s)	95, 151, 282
TasI	AATT	5 cut(s)	70, 222, 259, 284, 371
TauI	GCSGC	1 cut(s)	702
Tru1I	TTAA	3 cut(s)	497, 588, 714
Tru9I	TTAA	3 cut(s)	497, 588, 714
TscAI	CASTG	4 cut(s)	256, 552, 585, 689
TspDTI	ATGAA	4 cut(s)	29, 357, 470, 505
TspRI	CASTG	4 cut(s)	256, 552, 585, 689
Van91I	CCANNNNNTGG	1 cut(s)	430
VpaK11BI	GGWCC	2 cut(s)	81, 218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	222
XmaJI	CCTAGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	2 cut(s)	36, 330
XspI	CTAG	2 cut(s)	336, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.