Rorug04G0379600

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005278
Physical Location & Seq
Forward (+)
55032613 .. 55036892
4280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0379600.1

Sequence Viewer

Length: 858 bp
ATGTTGCAGCGCTACGCATTATTGCAGAGGATTTCAGTGATGGCTCTCAAACCCCACCGCCTCCATAACCTCGCCGATACGACGTCGCTTGGCGTAGCAAAGAGGCCAAGAACAATGGCCGCCGAATCCTCCTCCTCTATGAAAGACGCCTTCTCCCAATACGCCGATTACCTCAATAACCAAAATGATAAACGTGAAAGAATCGTCAAAGCGAGTCGGGATATCACCATGAACAGCAAAAAGGTCATCTTTCAAGTCCACAGAATGAGCAAGCATAACAGAGAGGAGGTTCTGCAGAAAGCCGAAAAGGATTTAGCCGCCGTGACGGATCAGTTCGTGGCCCGGCTGGTTAAAGAGCTGCAAGGGACTGATTTTTGGAAGCTAAGAAGAGCATACTCGCCTGGGATACAAGAGTACGTTGAAGCTGCAACCTTCTGTAAATTCTGCAGGACCGGGACTCTTTTGAATCTTGATGAGATGAATGCTACTTTGCTACCACTCAGCGATCCCTCTCTCGAGCCTTTGCAGATCAATGTCCTTGACTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGAACATATGCAAGTTTGTGCGTGAAATTTACAGGGAACTGACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAGAGAATGCTTGCTTCAGTGTTCATGTCAGAGGATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGGAGTGCCCAGTGTTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

285

Amino Acids

32.37

Weight (kDa)

6.25

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 63 - 261 4.5e-59 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
AciI CCGC 4 cut(s) 58, 120, 318, 583
AclWI GGATC 5 cut(s) 336, 500, 790, 809, 822
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 4 cut(s) 440, 600, 620, 654
AcuI CTGAAG 1 cut(s) 748
AcyI GRCGYC 2 cut(s) 83, 147
AfaI GTAC 1 cut(s) 416
AfeI AGCGCT 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 688, 803
AgsI TTSAA 5 cut(s) 254, 422, 466, 620, 734
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 4 cut(s) 358, 382, 425, 577
AluI AGCT 4 cut(s) 358, 382, 425, 577
AlwI GGATC 5 cut(s) 336, 500, 790, 809, 822
Ama87I CYCGRG 1 cut(s) 515
Aor51HI AGCGCT 1 cut(s) 11
AoxI GGCC 3 cut(s) 104, 117, 339
ApeKI GCWGC 3 cut(s) 7, 358, 425
ApoI RAATTY 4 cut(s) 440, 600, 620, 654
AspA2I CCTAGG 1 cut(s) 550
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 340, 450
AsuC2I CCSGG 2 cut(s) 343, 454
AsuHPI GGTGA 2 cut(s) 217, 623
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 1 cut(s) 450
AvrII CCTAGG 1 cut(s) 550
BaeGI GKGCMC 1 cut(s) 843
BaeI ACNNNNGTAYC 2 cut(s) 398, 431
BamHI GGATCC 1 cut(s) 814
BbsI GAAGAC 1 cut(s) 716
BbvI GCAGC 3 cut(s) 19, 345, 412
BccI CCATC 2 cut(s) 34, 602
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 2 cut(s) 399, 715
BcnI CCSGG 2 cut(s) 343, 454
BfaI CTAG 2 cut(s) 551, 674
BfmI CTRYAG 2 cut(s) 293, 445
BfoI RGCGCY 1 cut(s) 13
BfuI GTATCC 2 cut(s) 399, 715
BisI GCNGC 5 cut(s) 8, 120, 318, 359, 426
BlnI CCTAGG 1 cut(s) 550
BlsI GCNGC 5 cut(s) 9, 121, 319, 360, 427
Bme1390I CCNGG 3 cut(s) 343, 402, 454
Bme18I GGWCC 1 cut(s) 450
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 2 cut(s) 340, 450
BmiI GGNNCC 2 cut(s) 808, 816
BmrFI CCNGG 3 cut(s) 343, 402, 454
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 1 cut(s) 570
BmuI ACTGGG 1 cut(s) 837
BpiI GAAGAC 1 cut(s) 716
BpmI CTGGAG 1 cut(s) 591
BpuMI CCSGG 2 cut(s) 343, 454
BsaHI GRCGYC 2 cut(s) 83, 147
BsaJI CCNNGG 3 cut(s) 401, 550, 810
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 688, 803
Bse1I ACTGG 2 cut(s) 574, 843
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 3 cut(s) 401, 550, 810
BseGI GGATG 1 cut(s) 697
BseLI CCNNNNNNNGG 2 cut(s) 688, 803
BseMII CTCAG 2 cut(s) 514, 618
BseNI ACTGG 2 cut(s) 574, 843
BseRI GAGGAG 3 cut(s) 121, 124, 299
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 3 cut(s) 19, 345, 412
BshFI GGCC 3 cut(s) 106, 119, 341
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 2 cut(s) 343, 453
BslFI GGGAC 3 cut(s) 379, 469, 665
BslI CCNNNNNNNGG 2 cut(s) 688, 803
BsmFI GGGAC 3 cut(s) 379, 469, 665
BsmI GAATGC 2 cut(s) 487, 760
BsnI GGCC 3 cut(s) 106, 119, 341
BsoBI CYCGRG 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 843
Bsp143I GATC 5 cut(s) 328, 505, 528, 782, 814
BspACI CCGC 4 cut(s) 58, 120, 318, 583
BspANI GGCC 3 cut(s) 106, 119, 341
BspCNI CTCAG 2 cut(s) 513, 619
BspLI GGNNCC 2 cut(s) 808, 816
BspMAI CTGCAG 2 cut(s) 297, 449
BspPI GGATC 5 cut(s) 336, 500, 790, 809, 822
BspQI GCTCTTC 1 cut(s) 382
BsrI ACTGG 2 cut(s) 574, 843
BssECI CCNNGG 3 cut(s) 401, 550, 810
BssMI GATC 5 cut(s) 328, 505, 528, 782, 814
BssNI GRCGYC 2 cut(s) 83, 147
BssT1I CCWWGG 1 cut(s) 550
Bst2UI CCWGG 1 cut(s) 402
Bst6I CTCTTC 1 cut(s) 382
BstACI GRCGYC 2 cut(s) 83, 147
BstC8I GCNNGC 3 cut(s) 272, 558, 760
BstDEI CTNAG 3 cut(s) 383, 500, 627
BstF5I GGATG 1 cut(s) 697
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 5 cut(s) 331, 508, 531, 785, 817
BstMBI GATC 5 cut(s) 328, 505, 528, 782, 814
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 3 cut(s) 341, 400, 452
BstSFI CTRYAG 2 cut(s) 293, 445
BstSLI GKGCMC 1 cut(s) 843
BstV1I GCAGC 3 cut(s) 19, 345, 412
BstV2I GAAGAC 1 cut(s) 716
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BsuI GTATCC 2 cut(s) 399, 715
BsuRI GGCC 3 cut(s) 106, 119, 341
BtsCI GGATG 1 cut(s) 697
BtsIMutI CAGTG 3 cut(s) 42, 772, 850
Cac8I GCNNGC 3 cut(s) 272, 558, 760
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 340, 450
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 415
CviAII CATG 3 cut(s) 229, 706, 773
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 3 cut(s) 383, 500, 627
DpnI GATC 5 cut(s) 330, 507, 530, 784, 816
DpnII GATC 5 cut(s) 328, 505, 528, 782, 814
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 550
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 450
Eco47III AGCGCT 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 748
Eco88I CYCGRG 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 3 cut(s) 232, 709, 776
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 3 cut(s) 379, 469, 665
FatI CATG 3 cut(s) 228, 705, 772
FauNDI CATATG 1 cut(s) 635
Fnu4HI GCNGC 5 cut(s) 8, 120, 318, 359, 426
FokI GGATG 1 cut(s) 704
Fsp4HI GCNGC 5 cut(s) 8, 120, 318, 359, 426
FspBI CTAG 2 cut(s) 551, 674
GlaI GCGC 1 cut(s) 11
GluI GCNGC 5 cut(s) 8, 120, 318, 359, 426
GsuI CTGGAG 1 cut(s) 591
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 3 cut(s) 106, 119, 341
HapII CCGG 2 cut(s) 343, 453
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 2 cut(s) 83, 147
Hin1II CATG 3 cut(s) 232, 709, 776
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 5 cut(s) 125, 201, 214, 457, 466
HpaII CCGG 2 cut(s) 343, 453
HphI GGTGA 2 cut(s) 217, 623
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 607, 779, 787, 811
Hpy188III TCNNGA 3 cut(s) 218, 470, 515
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 2 cut(s) 85, 88
HpyAV CCTTC 2 cut(s) 160, 442
HpyCH4IV ACGT 3 cut(s) 83, 193, 417
HpyCH4V TGCA 9 cut(s) 7, 25, 295, 361, 428, 447, 526, 560, 639
HpyF3I CTNAG 3 cut(s) 383, 500, 627
HpySE526I ACGT 3 cut(s) 83, 193, 417
Hsp92I GRCGYC 2 cut(s) 83, 147
Hsp92II CATG 3 cut(s) 232, 709, 776
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 5 cut(s) 328, 505, 528, 782, 814
LguI GCTCTTC 1 cut(s) 382
LmnI GCTCC 1 cut(s) 812
LpnPI CCDG 8 cut(s) 332, 356, 387, 414, 433, 466, 555, 646
Lsp1109I GCAGC 3 cut(s) 19, 345, 412
LweI GCATC 1 cut(s) 570
MaeI CTAG 2 cut(s) 551, 674
MaeII ACGT 3 cut(s) 83, 193, 417
MaeIII GTNAC 1 cut(s) 322
MalI GATC 5 cut(s) 330, 507, 530, 784, 816
MboI GATC 5 cut(s) 328, 505, 528, 782, 814
MboII GAAGA 3 cut(s) 399, 721, 757
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 1 cut(s) 814
MhlI GDGCHC 1 cut(s) 843
MluCI AATT 5 cut(s) 440, 591, 600, 620, 654
MlyI GAGTC 2 cut(s) 223, 451
MmeI TCCRAC 1 cut(s) 842
MseI TTAA 1 cut(s) 351
MspI CCGG 2 cut(s) 343, 453
MspR9I CCNGG 3 cut(s) 343, 402, 454
MunI CAATTG 1 cut(s) 591
Mva1269I GAATGC 2 cut(s) 487, 760
MvaI CCWGG 1 cut(s) 402
NciI CCSGG 2 cut(s) 343, 454
NdeI CATATG 1 cut(s) 635
NdeII GATC 5 cut(s) 328, 505, 528, 782, 814
NlaIII CATG 3 cut(s) 232, 709, 776
NlaIV GGNNCC 2 cut(s) 808, 816
NmuCI GTSAC 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 515
PciSI GCTCTTC 1 cut(s) 382
PctI GAATGC 2 cut(s) 487, 760
PfeI GAWTC 3 cut(s) 125, 201, 466
PkrI GCNGC 5 cut(s) 9, 121, 319, 360, 427
PleI GAGTC 2 cut(s) 222, 451
PpsI GAGTC 2 cut(s) 222, 451
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 808, 816
PspPI GGNCC 2 cut(s) 340, 450
PstI CTGCAG 2 cut(s) 297, 449
PsuI RGATCY 1 cut(s) 814
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SapI GCTCTTC 1 cut(s) 382
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 5 cut(s) 8, 120, 318, 359, 426
Sau3AI GATC 5 cut(s) 328, 505, 528, 782, 814
Sau96I GGNCC 2 cut(s) 340, 450
SchI GAGTC 2 cut(s) 223, 451
ScrFI CCNGG 3 cut(s) 343, 402, 454
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 2 cut(s) 293, 445
Sfr274I CTCGAG 1 cut(s) 515
SinI GGWCC 1 cut(s) 450
SlaI CTCGAG 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 5 cut(s) 440, 591, 600, 620, 654
SsiI CCGC 4 cut(s) 58, 120, 318, 583
SspMI CTAG 2 cut(s) 551, 674
StyD4I CCNGG 3 cut(s) 341, 400, 452
StyI CCWWGG 1 cut(s) 550
TaiI ACGT 3 cut(s) 86, 196, 420
TaqI TCGA 2 cut(s) 516, 598
TasI AATT 5 cut(s) 440, 591, 600, 620, 654
TauI GCSGC 2 cut(s) 122, 320
TfiI GAWTC 3 cut(s) 125, 201, 466
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 3 cut(s) 42, 772, 850
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 3 cut(s) 7, 358, 425
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 6 cut(s) 155, 245, 494, 722, 758, 761
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 3 cut(s) 42, 772, 850
VpaK11BI GGWCC 1 cut(s) 450
XapI RAATTY 4 cut(s) 440, 600, 620, 654
XhoI CTCGAG 1 cut(s) 515
XmaJI CCTAGG 1 cut(s) 550
XspI CTAG 2 cut(s) 551, 674
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.