Rmu_ssc0000396.1_g000006

sphingoid long-chain bases kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000396.1
Physical Location & Seq
Forward (+)
42295 .. 51950
9656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000396.1_g000006.1.cds

Sequence Viewer

Length: 1710 bp
atgcagaagagtgggagtgtttccaagaatagtttgagagtgacaacccctcagcagtcccttaggcgactgggcttgtgctcccaaatagctactgctactggtggccagcactcctccccaattgtcttccctgagaaacagaaacgacacaagatcaaggcttctaagactcctactactcctgcctctgctgatgatcccaattctctcaagaccttcgagcacaggattgacattccggcttctgctgctggagatgaaaagtctgatttgttgggttatgccgtcttctctggaaagttagttttggacaagagtaaaatcactctcgtaaacgccacttctacagatccacaacaacaaacctcctcctctaccaaccaggaagctgttgatgctaagcttacaagcaaggccttaatttggggttctcacatgctgcatctggatgatgttatctcggtttcatacaatgttgggctcagacattttaccgtgcattcttatcccttaaaaaaaggttcttttggcctttcttgtttcatgaaacctcgaagaagtcgcaaggactttcgattcttggcttctagcatagaagacgccgttcaatgggttggtgggtttgctgatcagcagtgttatgtgaattgcttgcctcatccattacaatcttctaagaagcaggcttcttcagaattacttcccattgatactcctcctgaattaattttcaaatgtaagagcccaccaaaaatgcttgtcatattgaatccacgatcgggacgtggccgttcgagtaaggtttttgacagcatcgttgaacctatatttaagcttgcaggtttcaaagtggaggtagtcaaaacaacatcggcaggtcatgctaagaaacttgcatctagtgttgacattagcagttgtcctgatggaatcatatgtgttgggggcgatggaattattaatgaggttctaaatggtttacttagtagagacaaccaaaaagaaggaatttccataccaattggaattataccggctggatccgataattccttagtttggacggttcttggagttagggatccagtttctgctgcaatggctattgtcaagggtggtcttactgctacagatgtttttgctgttgagtggattcagacgggtgttatccactttgggatgacagtctcttattatggttttgtgagtgatgacagcgtgtgtgtgtgtgtgtctgaacctaattgggatgtggaaaatcctattgaattgccagggccatcagatgacgtagaagcaggaacaaaggaagttgtgcccaggtatgaagataaatgggttgtgaccaagggtcagttgcttggcattcttgtttgtaatcatgcatgcagaactgttcagagttcccaagtggtggcaccaaaagctgagcatgatgacaacaccttggatttgctcctagttcatggaagtgggcgattaaggctgttgaggtttttcatgcttctgcagatgggtagacacctgtcactgccatacgtggaaaatgtcaaggtaaagtcggtgaagatcaaggcatcaggaaagcacacccataacggttgtggcattgatggggagctttttccacttaatgggcaagtcatttcttcgttgcttccagaacagtgcagacttattggtcgctcctataaccatcacgcctga

Protein Analysis

569

Amino Acids

61.7

Weight (kDa)

8.81

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1683
Acc36I ACCTGC 2 cut(s) 833, 869
AccB1I GGYRCC 1 cut(s) 1420
AccB7I CCANNNNNTGG 2 cut(s) 1417, 1637
AccI GTMKAC 1 cut(s) 1522
AclWI GGATC 6 cut(s) 194, 347, 1038, 1051, 1079, 1092
AcoI YGGCCR 2 cut(s) 106, 790
AcsI RAATTY 1 cut(s) 1011
AcuI CTGAAG 1 cut(s) 678
AcyI GRCGYC 1 cut(s) 603
AfiI CCNNNNNNNGG 6 cut(s) 426, 612, 782, 1062, 1417, 1637
AgsI TTSAA 6 cut(s) 611, 736, 772, 824, 850, 1271
AhdI GACNNNNNGTC 1 cut(s) 1353
AjiI CACGTC 1 cut(s) 788
AjnI CCWGG 3 cut(s) 384, 1276, 1322
AluBI AGCT 6 cut(s) 92, 392, 406, 838, 1430, 1624
AluI AGCT 6 cut(s) 92, 392, 406, 838, 1430, 1624
Alw21I GWGCWC 2 cut(s) 83, 228
Alw26I GTCTC 2 cut(s) 987, 1195
AlwI GGATC 6 cut(s) 194, 347, 1038, 1051, 1079, 1092
AlwNI CAGNNNCTG 1 cut(s) 1094
AoxI GGCC 5 cut(s) 106, 417, 532, 790, 1280
ApeKI GCWGC 3 cut(s) 251, 442, 1097
ApoI RAATTY 1 cut(s) 1011
AseI ATTAAT 2 cut(s) 728, 963
Asp700I GAANNNNTTC 1 cut(s) 702
AspS9I GGNCC 1 cut(s) 1280
AsuHPI GGTGA 1 cut(s) 1579
AxyI CCTNAGG 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 1323
BalI TGGCCA 1 cut(s) 108
BamHI GGATCC 2 cut(s) 1043, 1084
BanI GGYRCC 1 cut(s) 1420
BanII GRGCYC 2 cut(s) 486, 749
BbsI GAAGAC 3 cut(s) 121, 283, 606
Bbv12I GWGCWC 2 cut(s) 83, 228
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 238, 429, 1084
BccI CCATC 6 cut(s) 923, 947, 1291, 1510, 1610, 1707
BceAI ACGGC 3 cut(s) 272, 590, 777
BciT130I CCWGG 3 cut(s) 386, 1278, 1324
BclI TGATCA 1 cut(s) 631
BcoDI GTCTC 2 cut(s) 987, 1195
BfaI CTAG 3 cut(s) 591, 903, 1463
BfmI CTRYAG 3 cut(s) 348, 1131, 1511
BfuAI ACCTGC 2 cut(s) 833, 869
BisI GCNGC 3 cut(s) 252, 443, 1098
BlpI GCTNAGC 2 cut(s) 402, 1431
BlsI GCNGC 3 cut(s) 253, 444, 1099
Bme1390I CCNGG 3 cut(s) 386, 1278, 1324
BmeRI GACNNNNNGTC 1 cut(s) 1353
BmgBI CACGTC 1 cut(s) 788
BmgT120I GGNCC 1 cut(s) 1280
BmiI GGNNCC 3 cut(s) 1045, 1086, 1422
BmrFI CCNGG 3 cut(s) 386, 1278, 1324
BmrI ACTGGG 1 cut(s) 80
BmsI GCATC 5 cut(s) 388, 454, 825, 908, 1589
BmuI ACTGGG 1 cut(s) 80
BoxI GACNNNNGTC 1 cut(s) 1528
BpiI GAAGAC 3 cut(s) 121, 283, 606
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 51
Bpu1102I GCTNAGC 2 cut(s) 402, 1431
BpuEI CTTGAG 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 1543
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 4 cut(s) 1277, 1322, 1350, 1449
Bsc4I CCNNNNNNNGG 6 cut(s) 426, 612, 782, 1062, 1417, 1637
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 3 cut(s) 75, 106, 1088
Bse21I CCTNAGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 1107
BseBI CCWGG 3 cut(s) 386, 1278, 1324
BseDI CCNNGG 4 cut(s) 1277, 1322, 1350, 1449
BseGI GGATG 4 cut(s) 457, 661, 1188, 1258
BseLI CCNNNNNNNGG 6 cut(s) 426, 612, 782, 1062, 1417, 1637
BseMI GCAATG 1 cut(s) 1107
BseMII CTCAG 4 cut(s) 65, 126, 499, 1422
BseNI ACTGG 3 cut(s) 75, 106, 1088
BseRI GAGGAG 4 cut(s) 106, 361, 364, 708
BseSI GKGCMC 1 cut(s) 1323
BseXI GCAGC 3 cut(s) 238, 429, 1084
BsgI GTGCAG 1 cut(s) 1693
Bsh1285I CGRYCG 1 cut(s) 782
BshFI GGCC 5 cut(s) 108, 419, 534, 792, 1282
BshNI GGYRCC 1 cut(s) 1420
BsiEI CGRYCG 1 cut(s) 782
BsiHKAI GWGCWC 2 cut(s) 83, 228
BsiSI CCGG 2 cut(s) 242, 1037
BslFI GGGAC 2 cut(s) 43, 798
BslI CCNNNNNNNGG 6 cut(s) 426, 612, 782, 1062, 1417, 1637
BsmAI GTCTC 2 cut(s) 987, 1195
BsmFI GGGAC 2 cut(s) 43, 798
BsmI GAATGC 2 cut(s) 502, 1368
BsnI GGCC 5 cut(s) 108, 419, 534, 792, 1282
Bsp1286I GDGCHC 5 cut(s) 83, 228, 486, 749, 1323
Bsp143I GATC 8 cut(s) 156, 199, 352, 631, 779, 1043, 1084, 1572
Bsp1720I GCTNAGC 2 cut(s) 402, 1431
BspANI GGCC 5 cut(s) 108, 419, 534, 792, 1282
BspCNI CTCAG 4 cut(s) 64, 127, 498, 1423
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 3 cut(s) 1045, 1086, 1422
BspMAI CTGCAG 1 cut(s) 1515
BspMI ACCTGC 2 cut(s) 833, 869
BspPI GGATC 6 cut(s) 194, 347, 1038, 1051, 1079, 1092
BspT107I GGYRCC 1 cut(s) 1420
BsrDI GCAATG 1 cut(s) 1107
BsrFI RCCGGY 1 cut(s) 1036
BsrI ACTGG 3 cut(s) 75, 106, 1088
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 4 cut(s) 1277, 1322, 1350, 1449
BssMI GATC 8 cut(s) 156, 199, 352, 631, 779, 1043, 1084, 1572
BssNI GRCGYC 1 cut(s) 603
BssT1I CCWWGG 2 cut(s) 1350, 1449
Bst2UI CCWGG 3 cut(s) 386, 1278, 1324
Bst4CI ACNGT 6 cut(s) 499, 1069, 1189, 1399, 1604, 1671
Bst6I CTCTTC 1 cut(s) 2
BstACI GRCGYC 1 cut(s) 603
BstAPI GCANNNNNTGC 1 cut(s) 884
BstBAI YACGTR 1 cut(s) 1543
BstC8I GCNNGC 5 cut(s) 110, 656, 687, 840, 1390
BstF5I GGATG 4 cut(s) 457, 661, 1188, 1258
BstKTI GATC 8 cut(s) 159, 202, 355, 634, 782, 1046, 1087, 1575
BstMAI GTCTC 2 cut(s) 987, 1195
BstMBI GATC 8 cut(s) 156, 199, 352, 631, 779, 1043, 1084, 1572
BstMCI CGRYCG 1 cut(s) 782
BstMWI GCNNNNNNNGC 6 cut(s) 251, 398, 884, 1103, 1427, 1486
BstNI CCWGG 3 cut(s) 386, 1278, 1324
BstNSI RCATGY 2 cut(s) 442, 1392
BstPAI GACNNNNGTC 1 cut(s) 1528
BstSCI CCNGG 3 cut(s) 384, 1276, 1322
BstSFI CTRYAG 3 cut(s) 348, 1131, 1511
BstSLI GKGCMC 1 cut(s) 1323
BstV1I GCAGC 3 cut(s) 238, 429, 1084
BstV2I GAAGAC 3 cut(s) 121, 283, 606
BstX2I RGATCY 3 cut(s) 352, 1043, 1084
BstYI RGATCY 3 cut(s) 352, 1043, 1084
Bsu36I CCTNAGG 1 cut(s) 62
BsuRI GGCC 5 cut(s) 108, 419, 534, 792, 1282
BtgZI GCGATG 1 cut(s) 966
BtrI CACGTC 1 cut(s) 788
BtsCI GGATG 4 cut(s) 457, 661, 1188, 1258
BtsI GCAGTG 2 cut(s) 644, 1532
BtsIMutI CAGTG 3 cut(s) 644, 1532, 1676
BveI ACCTGC 2 cut(s) 833, 869
Cac8I GCNNGC 5 cut(s) 110, 656, 687, 840, 1390
CaiI CAGNNNCTG 1 cut(s) 1094
CciI TCATGA 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 1 cut(s) 1280
CseI GACGC 1 cut(s) 611
CviAII CATG 8 cut(s) 439, 547, 884, 1385, 1389, 1436, 1469, 1504
DpnI GATC 8 cut(s) 158, 201, 354, 633, 781, 1045, 1086, 1574
DpnII GATC 8 cut(s) 156, 199, 352, 631, 779, 1043, 1084, 1572
DrdI GACNNNNNNGTC 1 cut(s) 1683
DriI GACNNNNNGTC 1 cut(s) 1353
DseDI GACNNNNNNGTC 1 cut(s) 1683
EaeI YGGCCR 2 cut(s) 106, 790
Eam1104I CTCTTC 1 cut(s) 2
Eam1105I GACNNNNNGTC 1 cut(s) 1353
EarI CTCTTC 1 cut(s) 2
Eco130I CCWWGG 2 cut(s) 1350, 1449
Eco147I AGGCCT 1 cut(s) 419
Eco24I GRGCYC 2 cut(s) 486, 749
Eco57I CTGAAG 1 cut(s) 678
Eco81I CCTNAGG 1 cut(s) 62
EcoRII CCWGG 3 cut(s) 384, 1276, 1322
EcoT14I CCWWGG 2 cut(s) 1350, 1449
EcoT22I ATGCAT 1 cut(s) 1390
EcoT38I GRGCYC 2 cut(s) 486, 749
ErhI CCWWGG 2 cut(s) 1350, 1449
FaeI CATG 8 cut(s) 442, 550, 887, 1388, 1392, 1439, 1472, 1507
FaqI GGGAC 2 cut(s) 43, 798
FatI CATG 8 cut(s) 438, 546, 883, 1384, 1388, 1435, 1468, 1503
FauNDI CATATG 1 cut(s) 938
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 1522
Fnu4HI GCNGC 3 cut(s) 252, 443, 1098
FokI GGATG 4 cut(s) 464, 648, 1195, 1265
FriOI GRGCYC 2 cut(s) 486, 749
Fsp4HI GCNGC 3 cut(s) 252, 443, 1098
FspBI CTAG 3 cut(s) 591, 903, 1463
GluI GCNGC 3 cut(s) 252, 443, 1098
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 5 cut(s) 108, 419, 534, 792, 1282
HapII CCGG 2 cut(s) 242, 1037
HgaI GACGC 1 cut(s) 611
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 8 cut(s) 442, 550, 887, 1388, 1392, 1439, 1472, 1507
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HindIII AAGCTT 2 cut(s) 404, 836
HinfI GANTC 5 cut(s) 172, 579, 772, 933, 1156
HpaII CCGG 2 cut(s) 242, 1037
HphI GGTGA 1 cut(s) 1579
Hpy166II GTNNAC 4 cut(s) 337, 910, 983, 1523
Hpy188I TCNGA 8 cut(s) 271, 488, 697, 1048, 1161, 1240, 1288, 1404
Hpy188III TCNNGA 9 cut(s) 214, 297, 449, 547, 722, 783, 926, 1584, 1664
Hpy8I GTNNAC 4 cut(s) 337, 910, 983, 1523
HpyAV CCTTC 2 cut(s) 229, 1001
HpyCH4III ACNGT 6 cut(s) 499, 1069, 1189, 1399, 1604, 1671
HpyCH4IV ACGT 3 cut(s) 787, 1293, 1542
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 398, 884, 1103, 1427, 1486
HpySE526I ACGT 3 cut(s) 787, 1293, 1542
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 8 cut(s) 442, 550, 887, 1388, 1392, 1439, 1472, 1507
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 8 cut(s) 156, 199, 352, 631, 779, 1043, 1084, 1572
LmnI GCTCC 4 cut(s) 86, 1464, 1621, 1694
Lsp1109I GCAGC 3 cut(s) 238, 429, 1084
LweI GCATC 5 cut(s) 388, 454, 825, 908, 1589
MaeI CTAG 3 cut(s) 591, 903, 1463
MaeII ACGT 3 cut(s) 787, 1293, 1542
MaeIII GTNAC 3 cut(s) 40, 1345, 1530
MalI GATC 8 cut(s) 158, 201, 354, 633, 781, 1045, 1086, 1574
MboI GATC 8 cut(s) 156, 199, 352, 631, 779, 1043, 1084, 1572
MfeI CAATTG 2 cut(s) 123, 1023
MflI RGATCY 3 cut(s) 352, 1043, 1084
MhlI GDGCHC 5 cut(s) 83, 228, 486, 749, 1323
MlsI TGGCCA 1 cut(s) 108
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 166
Mox20I TGGCCA 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 1390
MroXI GAANNNNTTC 1 cut(s) 702
MscI TGGCCA 1 cut(s) 108
MseI TTAA 7 cut(s) 422, 515, 728, 834, 963, 1484, 1635
MslI CAYNNNNRTG 2 cut(s) 450, 1473
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 2 cut(s) 242, 1037
MspR9I CCNGG 3 cut(s) 386, 1278, 1324
MunI CAATTG 2 cut(s) 123, 1023
Mva1269I GAATGC 2 cut(s) 502, 1368
MvaI CCWGG 3 cut(s) 386, 1278, 1324
MwoI GCNNNNNNNGC 6 cut(s) 251, 398, 884, 1103, 1427, 1486
NdeI CATATG 1 cut(s) 938
NdeII GATC 8 cut(s) 156, 199, 352, 631, 779, 1043, 1084, 1572
NlaIII CATG 8 cut(s) 442, 550, 887, 1388, 1392, 1439, 1472, 1507
NlaIV GGNNCC 3 cut(s) 1045, 1086, 1422
NmuCI GTSAC 3 cut(s) 40, 1345, 1530
NsiI ATGCAT 1 cut(s) 1390
NspI RCATGY 2 cut(s) 442, 1392
PaeI GCATGC 1 cut(s) 1392
PagI TCATGA 1 cut(s) 546
PceI AGGCCT 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 784
PctI GAATGC 2 cut(s) 502, 1368
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 4 cut(s) 579, 772, 933, 1156
PflMI CCANNNNNTGG 2 cut(s) 1417, 1637
PkrI GCNGC 3 cut(s) 253, 444, 1099
Ple19I CGATCG 1 cut(s) 782
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 1543
PshAI GACNNNNGTC 1 cut(s) 1528
PshBI ATTAAT 2 cut(s) 728, 963
Psp6I CCWGG 3 cut(s) 384, 1276, 1322
PspGI CCWGG 3 cut(s) 384, 1276, 1322
PspN4I GGNNCC 3 cut(s) 1045, 1086, 1422
PspPI GGNCC 1 cut(s) 1280
PstI CTGCAG 1 cut(s) 1515
PstNI CAGNNNCTG 1 cut(s) 1094
PsuI RGATCY 3 cut(s) 352, 1043, 1084
PvuI CGATCG 1 cut(s) 782
RseI CAYNNNNRTG 2 cut(s) 450, 1473
SaqAI TTAA 7 cut(s) 422, 515, 728, 834, 963, 1484, 1635
SatI GCNGC 3 cut(s) 252, 443, 1098
Sau3AI GATC 8 cut(s) 156, 199, 352, 631, 779, 1043, 1084, 1572
Sau96I GGNCC 1 cut(s) 1280
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 3 cut(s) 386, 1278, 1324
SduI GDGCHC 5 cut(s) 83, 228, 486, 749, 1323
SfaNI GCATC 5 cut(s) 388, 454, 825, 908, 1589
SfcI CTRYAG 3 cut(s) 348, 1131, 1511
SmiMI CAYNNNNRTG 2 cut(s) 450, 1473
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SphI GCATGC 1 cut(s) 1392
SseBI AGGCCT 1 cut(s) 419
SspMI CTAG 3 cut(s) 591, 903, 1463
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 3 cut(s) 384, 1276, 1322
StyI CCWWGG 2 cut(s) 1350, 1449
TaaI ACNGT 6 cut(s) 499, 1069, 1189, 1399, 1604, 1671
TaiI ACGT 3 cut(s) 790, 1296, 1545
TaqI TCGA 4 cut(s) 222, 556, 577, 797
TfiI GAWTC 4 cut(s) 579, 772, 933, 1156
Tru1I TTAA 7 cut(s) 422, 515, 728, 834, 963, 1484, 1635
Tru9I TTAA 7 cut(s) 422, 515, 728, 834, 963, 1484, 1635
TscAI CASTG 3 cut(s) 644, 1539, 1676
TseFI GTSAC 3 cut(s) 40, 1345, 1530
TseI GCWGC 3 cut(s) 251, 442, 1097
Tsp45I GTSAC 3 cut(s) 40, 1345, 1530
TspDTI ATGAA 7 cut(s) 276, 459, 535, 563, 1344, 1457, 1492
TspRI CASTG 3 cut(s) 644, 1539, 1676
Van91I CCANNNNNTGG 2 cut(s) 1417, 1637
VspI ATTAAT 2 cut(s) 728, 963
XapI RAATTY 1 cut(s) 1011
XceI RCATGY 2 cut(s) 442, 1392
XcmI CCANNNNNNNNNTGG 1 cut(s) 1604
XmiI GTMKAC 1 cut(s) 1522
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 3 cut(s) 591, 903, 1463
Zsp2I ATGCAT 1 cut(s) 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.