Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8061930.1

Orthogroup ID

OG0005278

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 475

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8061930.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 313 bp

ctatgaagttgagtaccttccagcatcaaaagaggatctagaaggaaaactctcagctgaaattgatgtgtcagacttgtacactgacattatgaggagatcaaataccgatggtattccaagagcttctagtttatcaagtattgactccattatgactcctagtcgaatgtctggaggtgacttggatacaacctgcagtagcactcatgctagcattgaaccatctgaaaccggaagttattcatcctcagctgcccctgtcaacaacaccaaactggccaaggacccggtcaaagtcaaggacagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0017050 GO:0030148 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046467 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

103

Amino Acids

11.05

Weight (kDa)

4.62

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23450 AT5G23450 AT5G23450 AT5G23450 AT5G23450
fragaria_vesca	FvH4_4g37380 FvH4_4g37380 FvH4_4g37380
malus_domestica	MD13G1000100.v1.1 MD16G1005700.v1.1 MD16G1005800.v1.1
prunus_persica	Prupe.1G584800_v2.0.a1
pyrus_communis	pycom13g00010 pycom2749g00100 pycom2749g00120
rosa_chinensis	RchiOBHm_Chr4g0447291
rosa_laevigata	RLG00000005589
rosa_multiflora	Rmu_co8061930.1_g000001 Rmu_sc0017601.1_g000001 Rmu_ssc0000396.1_g000006
rosa_roxburghii	Rroxscaffold_5G00387670
rosa_rugosa	Rorug04G0379600 Rorug04G0379600 Rorug04G0379700
rosa_samantha	Rh4AG440900 Rh4BG450000 Rh4CG467100 Rh4DG448400
rosa_wichuraiana	Rw4G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	280
AfaI	GTAC	2 cut(s)	15, 81
AgsI	TTSAA	1 cut(s)	222
AhdI	GACNNNNNGTC	1 cut(s)	163
AluBI	AGCT	3 cut(s)	57, 126, 255
AluI	AGCT	3 cut(s)	57, 126, 255
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	192
AsuNHI	GCTAGC	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	282
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	2 cut(s)	105, 233
BciVI	GTATCC	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	4 cut(s)	39, 130, 163, 214
BfmI	CTRYAG	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	287
BmeRI	GACNNNNNGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	33
BmtI	GCTAGC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	67, 265
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	235, 291
BsnI	GGCC	1 cut(s)	282
Bsp1407I	TGTACA	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	35, 99
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	2 cut(s)	66, 264
BspLI	GGNNCC	1 cut(s)	289
BspMAI	CTGCAG	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	204
BspOI	GCTAGC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	43
BsrGI	TGTACA	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	35, 99
BssT1I	CCWWGG	1 cut(s)	283
BstAUI	TGTACA	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	2 cut(s)	53, 251
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	2 cut(s)	38, 102
BstMBI	GATC	2 cut(s)	35, 99
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	14, 80
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	4 cut(s)	57, 126, 255, 282
CviKI_1	RGCY	4 cut(s)	57, 126, 255, 282
CviQI	GTAC	2 cut(s)	14, 80
DdeI	CTNAG	2 cut(s)	53, 251
DpnI	GATC	2 cut(s)	37, 101
DpnII	GATC	2 cut(s)	35, 99
DriI	GACNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	280
Eam1105I	GACNNNNNGTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	1 cut(s)	213
FaiI	YATR	4 cut(s)	4, 93, 156, 211
FatI	CATG	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	4 cut(s)	39, 130, 163, 214
GluI	GCNGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	235, 291
Hin1II	CATG	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HinfI	GANTC	2 cut(s)	147, 158
HpaII	CCGG	2 cut(s)	235, 291
HphI	GGTGA	1 cut(s)	192
Hpy166II	GTNNAC	2 cut(s)	82, 266
Hpy188I	TCNGA	2 cut(s)	74, 230
Hpy188III	TCNNGA	2 cut(s)	39, 175
Hpy8I	GTNNAC	2 cut(s)	82, 266
HpyAV	CCTTC	2 cut(s)	27, 36
HpyCH4V	TGCA	1 cut(s)	199
HpyF3I	CTNAG	2 cut(s)	53, 251
Hsp92II	CATG	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	35, 99
LpnPI	CCDG	7 cut(s)	34, 160, 209, 248, 264, 274, 304
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	4 cut(s)	39, 130, 163, 214
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	2 cut(s)	37, 101
MboI	GATC	2 cut(s)	35, 99
MflI	RGATCY	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	1 cut(s)	61
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	2 cut(s)	141, 152
MnlI	CCTC	4 cut(s)	26, 88, 171, 260
Mox20I	TGGCCA	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	57, 255
MspI	CCGG	2 cut(s)	235, 291
MspR9I	CCNGG	1 cut(s)	291
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	2 cut(s)	35, 99
NheI	GCTAGC	1 cut(s)	213
NlaIII	CATG	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	242
PflFI	GACNNNGTC	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	2 cut(s)	141, 152
PpsI	GAGTC	2 cut(s)	141, 152
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	287
PspPPI	RGGWCCY	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	35
PsyI	GACNNNGTC	1 cut(s)	291
PvuII	CAGCTG	2 cut(s)	57, 255
RsaI	GTAC	2 cut(s)	15, 81
RsaNI	GTAC	2 cut(s)	14, 80
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	2 cut(s)	35, 99
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	2 cut(s)	141, 152
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	6 cut(s)	19, 59, 128, 182, 198, 257
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	287
Sse9I	AATT	1 cut(s)	61
SspMI	CTAG	4 cut(s)	39, 130, 163, 214
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	283
TaqI	TCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	61
TatI	WGTACW	1 cut(s)	79
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	2 cut(s)	19, 235
TspRI	CASTG	1 cut(s)	89
Tth111I	GACNNNGTC	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	287
XbaI	TCTAGA	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	4 cut(s)	39, 130, 163, 214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.