Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00002749

Orthogroup ID

OG0005278

Physical Location & Seq

Genomic Coordinates Forward (+)

68706 .. 69502

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom2749g00100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCAGAAGAGTGGGAGTGTTTCCAAGAATAGTTTGAGAGTGACGACACCTCAGCAGTCTCTCAGGCGACTGGGATTGTGCACCCAAATAGCTACTGCAACTGGGGGTCAACACTCCTCCCCAATTGTTTTCCCTGAGAAACAGAAACGACACAAGATCAAGGCTTCCAAGACTCCAACCCCTGCCTCTATTGATGATCCCAACACACTAAAGACCTTTGAGCACAGGATTGACATTCCGGCTGCTGCTGCTGGAGATGAAAAGTCTGACCTGTTGGGTTATGTTGTTTTTGCCGGAAAATTAGTGTTGGACAAAAGAAACACCAGCAGTATAAACACTAATTCTTCTACTGATGTACACCAAACAACCTCCTCTTCTGATATTCCCAACCAGGAAGCTGTTGATGCCAAGCTTACCAGTAAGGCTTTAATTTGGGGTTCTCACATGCTGCATCTTGATGATGTCATCTCAGTTTCATACAACGTTGGTCTCAGACATTTCACTGTGCATTCTTATCCCTTGAAAAAGGGTTCTTGTGGCCTTTCATGTCTTATGAAACCTCGCAGAAGCCGTAAGGACTTTCGATTCTCGGCTTCTAGCATAGAAGAGGCAGTTCAGTGGGTCGGTGGGTTTGCTGATCGAGCAGTGTTATGTGAATTGCTTGCCTCATCCATTGCTATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0017050 GO:0030148 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046467 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

229

Amino Acids

24.81

Weight (kDa)

9.51

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23450 AT5G23450 AT5G23450 AT5G23450 AT5G23450
fragaria_vesca	FvH4_4g37380 FvH4_4g37380 FvH4_4g37380
malus_domestica	MD13G1000100.v1.1 MD16G1005700.v1.1 MD16G1005800.v1.1
prunus_persica	Prupe.1G584800_v2.0.a1
pyrus_communis	pycom13g00010 pycom2749g00100 pycom2749g00120
rosa_chinensis	RchiOBHm_Chr4g0447291
rosa_laevigata	RLG00000005589
rosa_multiflora	Rmu_co8061930.1_g000001 Rmu_sc0017601.1_g000001 Rmu_ssc0000396.1_g000006
rosa_roxburghii	Rroxscaffold_5G00387670
rosa_rugosa	Rorug04G0379600 Rorug04G0379600 Rorug04G0379700
rosa_samantha	Rh4AG440900 Rh4BG450000 Rh4CG467100 Rh4DG448400
rosa_wichuraiana	Rw4G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	3 cut(s)	92, 398, 412
AluI	AGCT	3 cut(s)	92, 398, 412
Alw21I	GWGCWC	2 cut(s)	83, 225
Alw26I	GTCTC	2 cut(s)	63, 494
Alw44I	GTGCAC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	538
ApaLI	GTGCAC	1 cut(s)	79
ApeKI	GCWGC	4 cut(s)	242, 245, 248, 448
BaeGI	GKGCMC	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	83, 225
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	4 cut(s)	229, 232, 235, 435
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	63, 494
BfaI	CTAG	1 cut(s)	597
BisI	GCNGC	4 cut(s)	243, 246, 249, 449
BlsI	GCNGC	4 cut(s)	244, 247, 250, 450
Bme1390I	CCNGG	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	2 cut(s)	80, 111
BmsI	GCATC	2 cut(s)	394, 460
BmuI	ACTGGG	2 cut(s)	80, 111
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	494
Bse1I	ACTGG	3 cut(s)	75, 106, 417
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	668
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	5 cut(s)	65, 76, 126, 483, 505
BseNI	ACTGG	3 cut(s)	75, 106, 417
BseRI	GAGGAG	2 cut(s)	106, 361
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	229, 232, 235, 435
BshFI	GGCC	1 cut(s)	540
BsiHKAI	GWGCWC	2 cut(s)	83, 225
BsiSI	CCGG	2 cut(s)	239, 294
BsmAI	GTCTC	2 cut(s)	63, 494
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	540
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	2 cut(s)	83, 225
Bsp1407I	TGTACA	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	156, 196, 637
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	5 cut(s)	64, 75, 127, 482, 504
BspPI	GGATC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	672
BsrGI	TGTACA	1 cut(s)	355
BsrI	ACTGG	3 cut(s)	75, 106, 417
BssMI	GATC	3 cut(s)	156, 196, 637
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	3 cut(s)	2, 379, 600
BstAUI	TGTACA	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	5 cut(s)	51, 62, 135, 469, 491
BstF5I	GGATG	1 cut(s)	668
BstKTI	GATC	3 cut(s)	159, 199, 640
BstMAI	GTCTC	2 cut(s)	63, 494
BstMBI	GATC	3 cut(s)	156, 196, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 404, 641
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	390
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	4 cut(s)	229, 232, 235, 435
BsuRI	GGCC	1 cut(s)	540
BtsCI	GGATG	1 cut(s)	668
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	501, 623, 651
Cac8I	GCNNGC	1 cut(s)	663
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	2 cut(s)	445, 546
CviJI	RGCY	9 cut(s)	92, 164, 242, 398, 412, 425, 540, 570, 593
CviKI_1	RGCY	9 cut(s)	92, 164, 242, 398, 412, 425, 540, 570, 593
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	5 cut(s)	51, 62, 135, 469, 491
DpnI	GATC	3 cut(s)	158, 198, 639
DpnII	GATC	3 cut(s)	156, 196, 637
Eam1104I	CTCTTC	3 cut(s)	2, 379, 600
EarI	CTCTTC	3 cut(s)	2, 379, 600
Eco31I	GGTCTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	390
FaeI	CATG	2 cut(s)	448, 549
FaiI	YATR	8 cut(s)	282, 332, 446, 478, 547, 554, 602, 652
FatI	CATG	2 cut(s)	444, 545
Fnu4HI	GCNGC	4 cut(s)	243, 246, 249, 449
FokI	GGATG	1 cut(s)	655
Fsp4HI	GCNGC	4 cut(s)	243, 246, 249, 449
FspBI	CTAG	1 cut(s)	597
GluI	GCNGC	4 cut(s)	243, 246, 249, 449
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	2 cut(s)	239, 294
Hin1II	CATG	2 cut(s)	448, 549
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	2 cut(s)	172, 585
HpaII	CCGG	2 cut(s)	239, 294
Hpy166II	GTNNAC	3 cut(s)	81, 110, 358
Hpy188I	TCNGA	3 cut(s)	268, 379, 494
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	3 cut(s)	81, 110, 358
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	5 cut(s)	4, 81, 98, 451, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 404, 641
HpyF3I	CTNAG	5 cut(s)	51, 62, 135, 469, 491
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	2 cut(s)	448, 549
Kzo9I	GATC	3 cut(s)	156, 196, 637
Lsp1109I	GCAGC	4 cut(s)	229, 232, 235, 435
LweI	GCATC	2 cut(s)	394, 460
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	158, 198, 639
MboI	GATC	3 cut(s)	156, 196, 637
MboII	GAAGA	5 cut(s)	19, 336, 366, 617, 673
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	2 cut(s)	83, 225
MluCI	AATT	5 cut(s)	123, 299, 340, 429, 656
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	2 cut(s)	200, 288
MnlI	CCTC	8 cut(s)	60, 127, 196, 379, 382, 570, 601, 676
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	456
MspI	CCGG	2 cut(s)	239, 294
MspR9I	CCNGG	1 cut(s)	392
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	248, 404, 641
NdeII	GATC	3 cut(s)	156, 196, 637
NlaIII	CATG	2 cut(s)	448, 549
NmeAIII	GCCGAG	1 cut(s)	569
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	585
PkrI	GCNGC	4 cut(s)	244, 247, 250, 450
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	4 cut(s)	243, 246, 249, 449
Sau3AI	GATC	3 cut(s)	156, 196, 637
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	83, 225
SetI	ASST	9 cut(s)	52, 94, 218, 273, 371, 400, 414, 486, 562
SfaNI	GCATC	2 cut(s)	394, 460
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	5 cut(s)	123, 299, 340, 429, 656
SspMI	CTAG	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	2 cut(s)	583, 640
TasI	AATT	5 cut(s)	123, 299, 340, 429, 656
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	3 cut(s)	508, 623, 651
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	4 cut(s)	242, 245, 248, 448
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	4 cut(s)	273, 465, 534, 569
TspRI	CASTG	3 cut(s)	508, 623, 651
VneI	GTGCAC	1 cut(s)	79
XceI	RCATGY	1 cut(s)	448
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.