Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005278

Physical Location & Seq

Genomic Coordinates Reverse (-)

583 .. 1689

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGACTCCTACTCAAATGTCTGGTGGAGACTTGGATACAACCTGCAGTAGCAGTCATGCTAGCATTGAACCATCTGAGTACGTACGTGGCCTGGATCCGAAATCAAAACGACATTCAACGGGAAGGAGCAATGTAACTGCAGAGCCAGAAGTTCTTCATCCTCAGCTTCCTCTGTCAACAACTCCAAATTGGCCAAGGACCCGCTCTAAGTCGAGAGCAGATAAAGGATGGACTGGATTGACAGCCACACATGATGCCTCCAGATCTTCTTGGTGCAATGCTGGAACAAATGATAAAGAGGATATATCATCAACGCTGTCTGATCCAGGTCCAATTTGGGATGCGGAACCCAAGTGGGACAGTGAACCTAATTGGGATGTGGAAAATCCTATTGAATTACCAGGGCCATCAGATGATGTGGAAGCAGGAAAAAAGGAAGTTGTTCCTAGGTATGAAGATAAATGGGTTGTTACTAAGGGTCAATTCCTCGGTATTCTGGTTTGCAATCATGCTTGCAGAACTGTTCAGAGTTCTCAAGTGGTGGCGCCAAAAGCTGAGCATGATGACAACACCTTGGATTTGCTCCTAGTTCATGGAAGTGGGCGGTTAAGGCTTTTGAGATTTTTCATGCTACTGCAGATGGGTAAACACCTTTCACTGCCATACGTGGAAAATGTCAAGGCTAAGTCAGTGAAGATTAAGGTATCAGGAAAGCACACCCTCAATGGTTGTGGTATTGATGGAGAGCTTTTTCCTCTCAACGGGCAAGTCATTTCTTCTTTGCTTCCAGAACAGTGCAGACTTATTGGTCGCCCCCTTCCCGTTAACCCTCACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0017050 GO:0030148 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046467 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

280

Amino Acids

30.62

Weight (kDa)

6.36

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23450 AT5G23450 AT5G23450 AT5G23450 AT5G23450
fragaria_vesca	FvH4_4g37380 FvH4_4g37380 FvH4_4g37380
malus_domestica	MD13G1000100.v1.1 MD16G1005700.v1.1 MD16G1005800.v1.1
prunus_persica	Prupe.1G584800_v2.0.a1
pyrus_communis	pycom13g00010 pycom2749g00100 pycom2749g00120
rosa_chinensis	RchiOBHm_Chr4g0447291
rosa_laevigata	RLG00000005589
rosa_multiflora	Rmu_co8061930.1_g000001 Rmu_sc0017601.1_g000001 Rmu_ssc0000396.1_g000006
rosa_roxburghii	Rroxscaffold_5G00387670
rosa_rugosa	Rorug04G0379600 Rorug04G0379600 Rorug04G0379700
rosa_samantha	Rh4AG440900 Rh4BG450000 Rh4CG467100 Rh4DG448400
rosa_wichuraiana	Rw4G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	807
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	544
AccBSI	CCGCTC	1 cut(s)	204
AciI	CCGC	3 cut(s)	202, 344, 604
AclWI	GGATC	3 cut(s)	89, 102, 317
AcoI	YGGCCR	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	545
AfaI	GTAC	2 cut(s)	80, 84
AfiI	CCNNNNNNNGG	1 cut(s)	761
AgsI	TTSAA	3 cut(s)	68, 117, 395
AjiI	CACGTC	1 cut(s)	835
AjnI	CCWGG	3 cut(s)	90, 325, 400
AluBI	AGCT	3 cut(s)	166, 554, 748
AluI	AGCT	3 cut(s)	166, 554, 748
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	3 cut(s)	89, 102, 317
AoxI	GGCC	3 cut(s)	88, 191, 404
Asp700I	GAANNNNTTC	2 cut(s)	153, 441
AspA2I	CCTAGG	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	3 cut(s)	198, 329, 404
AsuNHI	GCTAGC	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	198, 329
AvrII	CCTAGG	1 cut(s)	446
BalI	TGGCCA	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	544
BbvCI	CCTCAGC	1 cut(s)	162
BccI	CCATC	5 cut(s)	79, 222, 415, 634, 734
BciT130I	CCWGG	3 cut(s)	92, 327, 402
BciVI	GTATCC	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	3 cut(s)	60, 447, 587
BfmI	CTRYAG	3 cut(s)	43, 138, 635
BfoI	RGCGCY	1 cut(s)	548
BfuAI	ACCTGC	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	28
BglII	AGATCT	1 cut(s)	263
BlnI	CCTAGG	1 cut(s)	446
BlpI	GCTNAGC	1 cut(s)	555
Bme1390I	CCNGG	3 cut(s)	92, 327, 402
Bme18I	GGWCC	2 cut(s)	198, 329
BmgBI	CACGTC	1 cut(s)	835
BmgT120I	GGNCC	3 cut(s)	198, 329, 404
BmiI	GGNNCC	4 cut(s)	96, 200, 348, 546
BmrFI	CCNGG	3 cut(s)	92, 327, 402
BmsI	GCATC	2 cut(s)	244, 331
BmtI	GCTAGC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	244
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	519
BsaAI	YACGTR	3 cut(s)	82, 86, 667
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	5 cut(s)	194, 401, 446, 487, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	2 cut(s)	136, 283
BseBI	CCWGG	3 cut(s)	92, 327, 402
BseDI	CCNNGG	5 cut(s)	194, 401, 446, 487, 573
BseGI	GGATG	4 cut(s)	157, 233, 346, 382
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMI	GCAATG	2 cut(s)	136, 283
BseMII	CTCAG	3 cut(s)	66, 176, 546
BseNI	ACTGG	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	817
BshFI	GGCC	3 cut(s)	90, 193, 406
BshNI	GGYRCC	1 cut(s)	544
BsiWI	CGTACG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	3 cut(s)	90, 193, 406
Bsp143I	GATC	3 cut(s)	94, 263, 322
Bsp1720I	GCTNAGC	1 cut(s)	555
BspACI	CCGC	3 cut(s)	202, 344, 604
BspANI	GGCC	3 cut(s)	90, 193, 406
BspCNI	CTCAG	3 cut(s)	67, 175, 547
BspLI	GGNNCC	4 cut(s)	96, 200, 348, 546
BspMAI	CTGCAG	3 cut(s)	47, 142, 639
BspMI	ACCTGC	1 cut(s)	50
BspOI	GCTAGC	1 cut(s)	63
BspPI	GGATC	3 cut(s)	89, 102, 317
BspT107I	GGYRCC	1 cut(s)	544
BsrBI	CCGCTC	1 cut(s)	204
BsrDI	GCAATG	2 cut(s)	136, 283
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	5 cut(s)	194, 401, 446, 487, 573
BssMI	GATC	3 cut(s)	94, 263, 322
BssNI	GRCGYC	1 cut(s)	545
BssT1I	CCWWGG	3 cut(s)	194, 446, 573
Bst2UI	CCWGG	3 cut(s)	92, 327, 402
Bst4CI	ACNGT	3 cut(s)	362, 523, 795
BstACI	GRCGYC	1 cut(s)	545
BstBAI	YACGTR	3 cut(s)	82, 86, 667
BstC8I	GCNNGC	2 cut(s)	61, 514
BstDEI	CTNAG	6 cut(s)	75, 162, 207, 474, 555, 684
BstF5I	GGATG	4 cut(s)	157, 233, 346, 382
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	3 cut(s)	97, 266, 325
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	3 cut(s)	94, 263, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 610
BstNI	CCWGG	3 cut(s)	92, 327, 402
BstSCI	CCNGG	3 cut(s)	90, 325, 400
BstSFI	CTRYAG	3 cut(s)	43, 138, 635
BstSNI	TACGTA	1 cut(s)	82
BstX2I	RGATCY	2 cut(s)	94, 263
BstYI	RGATCY	2 cut(s)	94, 263
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	90, 193, 406
BtrI	CACGTC	1 cut(s)	835
BtsCI	GGATG	4 cut(s)	157, 233, 346, 382
BtsI	GCAGTG	1 cut(s)	656
BtsIMutI	CAGTG	4 cut(s)	367, 656, 696, 800
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	61, 514
CfoI	GCGC	1 cut(s)	547
Cfr13I	GGNCC	3 cut(s)	198, 329, 404
Csp6I	GTAC	2 cut(s)	79, 83
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviAII	CATG	6 cut(s)	56, 251, 509, 560, 593, 628
CviQI	GTAC	2 cut(s)	79, 83
DdeI	CTNAG	6 cut(s)	75, 162, 207, 474, 555, 684
DinI	GGCGCC	1 cut(s)	546
DpnI	GATC	3 cut(s)	96, 265, 324
DpnII	GATC	3 cut(s)	94, 263, 322
DrdI	GACNNNNNNGTC	1 cut(s)	807
DseDI	GACNNNNNNGTC	1 cut(s)	807
EaeI	YGGCCR	1 cut(s)	191
Eco105I	TACGTA	1 cut(s)	82
Eco130I	CCWWGG	3 cut(s)	194, 446, 573
Eco47I	GGWCC	2 cut(s)	198, 329
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	3 cut(s)	90, 325, 400
EcoT14I	CCWWGG	3 cut(s)	194, 446, 573
EgeI	GGCGCC	1 cut(s)	546
EheI	GGCGCC	1 cut(s)	546
ErhI	CCWWGG	3 cut(s)	194, 446, 573
FaeI	CATG	6 cut(s)	59, 254, 512, 563, 596, 631
FaiI	YATR	9 cut(s)	57, 252, 305, 453, 510, 561, 594, 629, 664
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	6 cut(s)	55, 250, 508, 559, 592, 627
FauI	CCCGC	1 cut(s)	209
FokI	GGATG	4 cut(s)	144, 240, 353, 389
FspBI	CTAG	3 cut(s)	60, 447, 587
GlaI	GCGC	1 cut(s)	546
GsuI	CTGGAG	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	3 cut(s)	90, 193, 406
HhaI	GCGC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	6 cut(s)	59, 254, 512, 563, 596, 631
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HincII	GTYRAC	2 cut(s)	177, 826
HindII	GTYRAC	2 cut(s)	177, 826
HinfI	GANTC	1 cut(s)	4
HpaI	GTTAAC	1 cut(s)	826
Hpy166II	GTNNAC	4 cut(s)	177, 365, 647, 826
Hpy188I	TCNGA	6 cut(s)	76, 99, 322, 412, 528, 839
Hpy188III	TCNNGA	4 cut(s)	213, 261, 708, 788
Hpy8I	GTNNAC	4 cut(s)	177, 365, 647, 826
HpyAV	CCTTC	2 cut(s)	117, 827
HpyCH4III	ACNGT	3 cut(s)	362, 523, 795
HpyCH4IV	ACGT	4 cut(s)	81, 85, 666, 834
HpyCH4V	TGCA	7 cut(s)	45, 140, 276, 504, 516, 637, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 610
HpyF3I	CTNAG	6 cut(s)	75, 162, 207, 474, 555, 684
HpySE526I	ACGT	4 cut(s)	81, 85, 666, 834
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	6 cut(s)	59, 254, 512, 563, 596, 631
HspAI	GCGC	1 cut(s)	545
KasI	GGCGCC	1 cut(s)	544
KspAI	GTTAAC	1 cut(s)	826
Kzo9I	GATC	3 cut(s)	94, 263, 322
LmnI	GCTCC	2 cut(s)	126, 588
LweI	GCATC	2 cut(s)	244, 331
MaeI	CTAG	3 cut(s)	60, 447, 587
MaeII	ACGT	4 cut(s)	81, 85, 666, 834
MaeIII	GTNAC	2 cut(s)	133, 469
MalI	GATC	3 cut(s)	96, 265, 324
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	3 cut(s)	94, 263, 322
MboII	GAAGA	5 cut(s)	146, 258, 467, 706, 768
MflI	RGATCY	2 cut(s)	94, 263
MlsI	TGGCCA	1 cut(s)	193
MluCI	AATT	5 cut(s)	187, 333, 370, 395, 482
MluNI	TGGCCA	1 cut(s)	193
Mly113I	GGCGCC	1 cut(s)	545
MnlI	CCTC	8 cut(s)	171, 180, 268, 292, 497, 731, 765, 840
Mox20I	TGGCCA	1 cut(s)	193
MroXI	GAANNNNTTC	2 cut(s)	153, 441
MscI	TGGCCA	1 cut(s)	193
MseI	TTAA	3 cut(s)	608, 699, 825
MslI	CAYNNNNRTG	1 cut(s)	597
Msp20I	TGGCCA	1 cut(s)	193
MspR9I	CCNGG	3 cut(s)	92, 327, 402
MvaI	CCWGG	3 cut(s)	92, 327, 402
MwoI	GCNNNNNNNGC	2 cut(s)	551, 610
NarI	GGCGCC	1 cut(s)	545
NdeII	GATC	3 cut(s)	94, 263, 322
NheI	GCTAGC	1 cut(s)	59
NlaIII	CATG	6 cut(s)	59, 254, 512, 563, 596, 631
NlaIV	GGNNCC	4 cut(s)	96, 200, 348, 546
PdmI	GAANNNNTTC	2 cut(s)	153, 441
Pfl23II	CGTACG	1 cut(s)	82
PluTI	GGCGCC	1 cut(s)	548
Ppu21I	YACGTR	3 cut(s)	82, 86, 667
PpuMI	RGGWCCY	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	3 cut(s)	90, 325, 400
PspGI	CCWGG	3 cut(s)	90, 325, 400
PspLI	CGTACG	1 cut(s)	82
PspN4I	GGNNCC	4 cut(s)	96, 200, 348, 546
PspPI	GGNCC	3 cut(s)	198, 329, 404
PspPPI	RGGWCCY	1 cut(s)	198
PstI	CTGCAG	3 cut(s)	47, 142, 639
PsuI	RGATCY	2 cut(s)	94, 263
RsaI	GTAC	2 cut(s)	80, 84
RsaNI	GTAC	2 cut(s)	79, 83
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	608, 699, 825
Sau3AI	GATC	3 cut(s)	94, 263, 322
Sau96I	GGNCC	3 cut(s)	198, 329, 404
ScrFI	CCNGG	3 cut(s)	92, 327, 402
SfaNI	GCATC	2 cut(s)	244, 331
SfcI	CTRYAG	3 cut(s)	43, 138, 635
SfoI	GGCGCC	1 cut(s)	546
SinI	GGWCC	2 cut(s)	198, 329
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
SnaBI	TACGTA	1 cut(s)	82
Sse9I	AATT	5 cut(s)	187, 333, 370, 395, 482
SsiI	CCGC	3 cut(s)	202, 344, 604
SspDI	GGCGCC	1 cut(s)	544
SspMI	CTAG	3 cut(s)	60, 447, 587
StyD4I	CCNGG	3 cut(s)	90, 325, 400
StyI	CCWWGG	3 cut(s)	194, 446, 573
TaaI	ACNGT	3 cut(s)	362, 523, 795
TaiI	ACGT	4 cut(s)	84, 88, 669, 837
TaqI	TCGA	1 cut(s)	212
TasI	AATT	5 cut(s)	187, 333, 370, 395, 482
Tru1I	TTAA	3 cut(s)	608, 699, 825
Tru9I	TTAA	3 cut(s)	608, 699, 825
TscAI	CASTG	4 cut(s)	367, 663, 696, 800
TspDTI	ATGAA	4 cut(s)	146, 468, 581, 616
TspRI	CASTG	4 cut(s)	367, 663, 696, 800
VpaK11BI	GGWCC	2 cut(s)	198, 329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XmaJI	CCTAGG	1 cut(s)	446
XmnI	GAANNNNTTC	2 cut(s)	153, 441
XspI	CTAG	3 cut(s)	60, 447, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.