Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017601.1

Orthogroup ID

OG0005278

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1129

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017601.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ctgccgaagtacagctatgaagttgagtaccttccagcatcaaaagaggatctagaaggaaaactctcagctgaaattgatgtgtcagacttgtacactgacattatgaggagatcaaataccgatggtattccaagagcttctagtttatcaagtattgactccattatgactcctagtcgaatgtctggaggtgacttggatacaacctgcagtagcactcatgctagcattgaaccatctgagtacgtgcgtggcctagatcctaaagcaaaaagactgtcaattggaaggaccaatataactgcagaaccggaagttattcatcctcagctgcccctgtcaacaacaccaaactggccaaggacccggtcaaagtcaaggacagatagaggatggactggattgacagccacacatgatgcctctagatcttcttggggaaacactggaacaaatgataaagaggatatatcatccacgctatccgatccaggcccaatttgggatgctgagccaaagtgggatactgaacctaattgggatgtggaaaatcctattgaattgccagggccatcagatgacgtagaagcaggaacaaaggaagttgtgcccaggtatgaagataaatgggttgtgaccaagggtcagttgcttggcattcttgtttgtaatcatgcatgcagaactgttcagagttcccaagtggtggcaccaaaagctgagcatgatgacaacaccttggatttgctcctagttcatggaagtgggcgattaaggctgttgaggtttttcatgcttctgcagatgggtagacacctgtcactgccatacgtggaaaatgtcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0017050 GO:0030148 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046467 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

283

Amino Acids

31.38

Weight (kDa)

5.15

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23450 AT5G23450 AT5G23450 AT5G23450 AT5G23450
fragaria_vesca	FvH4_4g37380 FvH4_4g37380 FvH4_4g37380
malus_domestica	MD13G1000100.v1.1 MD16G1005700.v1.1 MD16G1005800.v1.1
prunus_persica	Prupe.1G584800_v2.0.a1
pyrus_communis	pycom13g00010 pycom2749g00100 pycom2749g00120
rosa_chinensis	RchiOBHm_Chr4g0447291
rosa_laevigata	RLG00000005589
rosa_multiflora	Rmu_co8061930.1_g000001 Rmu_sc0017601.1_g000001 Rmu_ssc0000396.1_g000006
rosa_roxburghii	Rroxscaffold_5G00387670
rosa_rugosa	Rorug04G0379600 Rorug04G0379600 Rorug04G0379700
rosa_samantha	Rh4AG440900 Rh4BG450000 Rh4CG467100 Rh4DG448400
rosa_wichuraiana	Rw4G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	712
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccI	GTMKAC	1 cut(s)	814
AclWI	GGATC	3 cut(s)	57, 257, 485
AcoI	YGGCCR	1 cut(s)	359
AfaI	GTAC	4 cut(s)	11, 29, 95, 248
AfiI	CCNNNNNNNGG	2 cut(s)	505, 709
AgsI	TTSAA	2 cut(s)	236, 563
AhdI	GACNNNNNGTC	2 cut(s)	177, 645
AjnI	CCWGG	3 cut(s)	493, 568, 614
AluBI	AGCT	5 cut(s)	15, 71, 140, 334, 722
AluI	AGCT	5 cut(s)	15, 71, 140, 334, 722
AlwI	GGATC	3 cut(s)	57, 257, 485
AoxI	GGCC	4 cut(s)	256, 359, 496, 572
ApeKI	GCWGC	1 cut(s)	334
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
Asp700I	GAANNNNTTC	1 cut(s)	321
AspS9I	GGNCC	4 cut(s)	294, 366, 497, 572
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	206
AsuNHI	GCTAGC	1 cut(s)	227
AvaII	GGWCC	2 cut(s)	294, 366
BaeGI	GKGCMC	1 cut(s)	615
BalI	TGGCCA	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	712
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	5 cut(s)	119, 247, 390, 583, 802
BciT130I	CCWGG	3 cut(s)	495, 570, 616
BciVI	GTATCC	2 cut(s)	196, 520
BcnI	CCSGG	1 cut(s)	370
BfaI	CTAG	7 cut(s)	53, 144, 177, 228, 260, 429, 755
BfmI	CTRYAG	3 cut(s)	211, 306, 803
BfuAI	ACCTGC	1 cut(s)	218
BfuI	GTATCC	2 cut(s)	196, 520
BglII	AGATCT	1 cut(s)	431
BisI	GCNGC	1 cut(s)	335
BlpI	GCTNAGC	2 cut(s)	513, 723
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	4 cut(s)	370, 495, 570, 616
Bme18I	GGWCC	2 cut(s)	294, 366
BmeRI	GACNNNNNGTC	2 cut(s)	177, 645
BmgT120I	GGNCC	4 cut(s)	294, 366, 497, 572
BmiI	GGNNCC	2 cut(s)	368, 714
BmrFI	CCNGG	4 cut(s)	370, 495, 570, 616
BmsI	GCATC	3 cut(s)	47, 412, 499
BmtI	GCTAGC	1 cut(s)	231
BoxI	GACNNNNGTC	1 cut(s)	820
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	330
Bpu1102I	GCTNAGC	2 cut(s)	513, 723
BpuMI	CCSGG	1 cut(s)	370
BsaAI	YACGTR	2 cut(s)	250, 835
BsaJI	CCNNGG	5 cut(s)	362, 569, 614, 642, 741
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 709
Bse1I	ACTGG	3 cut(s)	362, 406, 454
BseBI	CCWGG	3 cut(s)	495, 570, 616
BseDI	CCNNGG	5 cut(s)	362, 569, 614, 642, 741
BseGI	GGATG	5 cut(s)	325, 401, 476, 514, 550
BseLI	CCNNNNNNNGG	2 cut(s)	505, 709
BseMII	CTCAG	5 cut(s)	81, 234, 344, 504, 714
BseNI	ACTGG	3 cut(s)	362, 406, 454
BseRI	GAGGAG	1 cut(s)	124
BseSI	GKGCMC	1 cut(s)	615
BseXI	GCAGC	1 cut(s)	321
BshFI	GGCC	4 cut(s)	258, 361, 498, 574
BshNI	GGYRCC	1 cut(s)	712
BsiSI	CCGG	2 cut(s)	314, 370
BslI	CCNNNNNNNGG	2 cut(s)	505, 709
BsmI	GAATGC	1 cut(s)	660
BsnI	GGCC	4 cut(s)	258, 361, 498, 574
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	5 cut(s)	49, 113, 262, 431, 490
Bsp1720I	GCTNAGC	2 cut(s)	513, 723
BspANI	GGCC	4 cut(s)	258, 361, 498, 574
BspCNI	CTCAG	5 cut(s)	80, 235, 343, 505, 715
BspLI	GGNNCC	2 cut(s)	368, 714
BspMAI	CTGCAG	3 cut(s)	215, 310, 807
BspMI	ACCTGC	1 cut(s)	218
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	3 cut(s)	57, 257, 485
BspT107I	GGYRCC	1 cut(s)	712
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	3 cut(s)	362, 406, 454
BssECI	CCNNGG	5 cut(s)	362, 569, 614, 642, 741
BssMI	GATC	5 cut(s)	49, 113, 262, 431, 490
BssT1I	CCWWGG	3 cut(s)	362, 642, 741
Bst2UI	CCWGG	3 cut(s)	495, 570, 616
Bst4CI	ACNGT	2 cut(s)	282, 691
BstAUI	TGTACA	1 cut(s)	93
BstBAI	YACGTR	2 cut(s)	250, 835
BstC8I	GCNNGC	2 cut(s)	229, 682
BstDEI	CTNAG	5 cut(s)	67, 243, 330, 513, 723
BstF5I	GGATG	5 cut(s)	325, 401, 476, 514, 550
BstKTI	GATC	5 cut(s)	52, 116, 265, 434, 493
BstMBI	GATC	5 cut(s)	49, 113, 262, 431, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	719, 778
BstNI	CCWGG	3 cut(s)	495, 570, 616
BstNSI	RCATGY	1 cut(s)	684
BstPAI	GACNNNNGTC	1 cut(s)	820
BstSCI	CCNGG	4 cut(s)	368, 493, 568, 614
BstSFI	CTRYAG	3 cut(s)	211, 306, 803
BstSLI	GKGCMC	1 cut(s)	615
BstV1I	GCAGC	1 cut(s)	321
BstX2I	RGATCY	3 cut(s)	49, 262, 431
BstYI	RGATCY	3 cut(s)	49, 262, 431
BsuI	GTATCC	2 cut(s)	196, 520
BsuRI	GGCC	4 cut(s)	258, 361, 498, 574
BtsCI	GGATG	5 cut(s)	325, 401, 476, 514, 550
BtsI	GCAGTG	1 cut(s)	824
BtsIMutI	CAGTG	3 cut(s)	96, 447, 824
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	229, 682
Cfr13I	GGNCC	4 cut(s)	294, 366, 497, 572
Csp6I	GTAC	4 cut(s)	10, 28, 94, 247
CviAII	CATG	7 cut(s)	224, 419, 677, 681, 728, 761, 796
CviQI	GTAC	4 cut(s)	10, 28, 94, 247
DdeI	CTNAG	5 cut(s)	67, 243, 330, 513, 723
DpnI	GATC	5 cut(s)	51, 115, 264, 433, 492
DpnII	GATC	5 cut(s)	49, 113, 262, 431, 490
DriI	GACNNNNNGTC	2 cut(s)	177, 645
EaeI	YGGCCR	1 cut(s)	359
Eam1105I	GACNNNNNGTC	2 cut(s)	177, 645
Eco130I	CCWWGG	3 cut(s)	362, 642, 741
Eco47I	GGWCC	2 cut(s)	294, 366
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	3 cut(s)	493, 568, 614
EcoT14I	CCWWGG	3 cut(s)	362, 642, 741
EcoT22I	ATGCAT	1 cut(s)	682
ErhI	CCWWGG	3 cut(s)	362, 642, 741
FaeI	CATG	7 cut(s)	227, 422, 680, 684, 731, 764, 799
FatI	CATG	7 cut(s)	223, 418, 676, 680, 727, 760, 795
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	5 cut(s)	312, 408, 463, 521, 557
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	7 cut(s)	53, 144, 177, 228, 260, 429, 755
GluI	GCNGC	1 cut(s)	335
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	4 cut(s)	258, 361, 498, 574
HapII	CCGG	2 cut(s)	314, 370
Hin1II	CATG	7 cut(s)	227, 422, 680, 684, 731, 764, 799
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	2 cut(s)	161, 172
HpaII	CCGG	2 cut(s)	314, 370
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	96, 345, 815
Hpy188I	TCNGA	5 cut(s)	88, 244, 490, 580, 696
Hpy188III	TCNNGA	3 cut(s)	53, 189, 429
Hpy8I	GTNNAC	3 cut(s)	96, 345, 815
HpyAV	CCTTC	3 cut(s)	41, 50, 285
HpyCH4III	ACNGT	2 cut(s)	282, 691
HpyCH4IV	ACGT	3 cut(s)	249, 585, 834
HpyCH4V	TGCA	5 cut(s)	213, 308, 680, 684, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	719, 778
HpyF3I	CTNAG	5 cut(s)	67, 243, 330, 513, 723
HpySE526I	ACGT	3 cut(s)	249, 585, 834
Hsp92II	CATG	7 cut(s)	227, 422, 680, 684, 731, 764, 799
Kzo9I	GATC	5 cut(s)	49, 113, 262, 431, 490
LmnI	GCTCC	1 cut(s)	756
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	3 cut(s)	47, 412, 499
MaeI	CTAG	7 cut(s)	53, 144, 177, 228, 260, 429, 755
MaeII	ACGT	3 cut(s)	249, 585, 834
MaeIII	GTNAC	3 cut(s)	194, 637, 822
MalI	GATC	5 cut(s)	51, 115, 264, 433, 492
MboI	GATC	5 cut(s)	49, 113, 262, 431, 490
MboII	GAAGA	2 cut(s)	426, 635
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	3 cut(s)	49, 262, 431
MhlI	GDGCHC	1 cut(s)	615
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	5 cut(s)	75, 285, 501, 538, 563
MluNI	TGGCCA	1 cut(s)	361
MlyI	GAGTC	2 cut(s)	155, 166
MnlI	CCTC	8 cut(s)	40, 102, 185, 339, 386, 436, 460, 780
Mox20I	TGGCCA	1 cut(s)	361
Mph1103I	ATGCAT	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	1 cut(s)	776
MslI	CAYNNNNRTG	1 cut(s)	765
Msp20I	TGGCCA	1 cut(s)	361
MspA1I	CMGCKG	2 cut(s)	71, 334
MspI	CCGG	2 cut(s)	314, 370
MspR9I	CCNGG	4 cut(s)	370, 495, 570, 616
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	660
MvaI	CCWGG	3 cut(s)	495, 570, 616
MwoI	GCNNNNNNNGC	2 cut(s)	719, 778
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	5 cut(s)	49, 113, 262, 431, 490
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	7 cut(s)	227, 422, 680, 684, 731, 764, 799
NlaIV	GGNNCC	2 cut(s)	368, 714
NmuCI	GTSAC	3 cut(s)	194, 637, 822
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	1 cut(s)	684
PaeI	GCATGC	1 cut(s)	684
PctI	GAATGC	1 cut(s)	660
PdmI	GAANNNNTTC	1 cut(s)	321
PflFI	GACNNNGTC	1 cut(s)	370
PflMI	CCANNNNNTGG	1 cut(s)	709
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	2 cut(s)	155, 166
PpsI	GAGTC	2 cut(s)	155, 166
Ppu21I	YACGTR	2 cut(s)	250, 835
PpuMI	RGGWCCY	1 cut(s)	366
PshAI	GACNNNNGTC	1 cut(s)	820
Psp5II	RGGWCCY	1 cut(s)	366
Psp6I	CCWGG	3 cut(s)	493, 568, 614
PspGI	CCWGG	3 cut(s)	493, 568, 614
PspN4I	GGNNCC	2 cut(s)	368, 714
PspPI	GGNCC	4 cut(s)	294, 366, 497, 572
PspPPI	RGGWCCY	1 cut(s)	366
PstI	CTGCAG	3 cut(s)	215, 310, 807
PsuI	RGATCY	3 cut(s)	49, 262, 431
PsyI	GACNNNGTC	1 cut(s)	370
PvuII	CAGCTG	2 cut(s)	71, 334
RsaI	GTAC	4 cut(s)	11, 29, 95, 248
RsaNI	GTAC	4 cut(s)	10, 28, 94, 247
RseI	CAYNNNNRTG	1 cut(s)	765
SaqAI	TTAA	1 cut(s)	776
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	5 cut(s)	49, 113, 262, 431, 490
Sau96I	GGNCC	4 cut(s)	294, 366, 497, 572
SchI	GAGTC	2 cut(s)	155, 166
ScrFI	CCNGG	4 cut(s)	370, 495, 570, 616
SduI	GDGCHC	1 cut(s)	615
SfaNI	GCATC	3 cut(s)	47, 412, 499
SfcI	CTRYAG	3 cut(s)	211, 306, 803
SinI	GGWCC	2 cut(s)	294, 366
SmiMI	CAYNNNNRTG	1 cut(s)	765
SphI	GCATGC	1 cut(s)	684
Sse9I	AATT	5 cut(s)	75, 285, 501, 538, 563
SspMI	CTAG	7 cut(s)	53, 144, 177, 228, 260, 429, 755
StyD4I	CCNGG	4 cut(s)	368, 493, 568, 614
StyI	CCWWGG	3 cut(s)	362, 642, 741
TaaI	ACNGT	2 cut(s)	282, 691
TaiI	ACGT	3 cut(s)	252, 588, 837
TaqI	TCGA	1 cut(s)	181
TasI	AATT	5 cut(s)	75, 285, 501, 538, 563
TatI	WGTACW	2 cut(s)	9, 93
Tru1I	TTAA	1 cut(s)	776
Tru9I	TTAA	1 cut(s)	776
TscAI	CASTG	3 cut(s)	103, 454, 831
TseFI	GTSAC	3 cut(s)	194, 637, 822
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	3 cut(s)	194, 637, 822
TspDTI	ATGAA	5 cut(s)	33, 314, 636, 749, 784
TspRI	CASTG	3 cut(s)	103, 454, 831
Tth111I	GACNNNGTC	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	2 cut(s)	294, 366
XbaI	TCTAGA	2 cut(s)	52, 428
XceI	RCATGY	1 cut(s)	684
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	7 cut(s)	53, 144, 177, 228, 260, 429, 755
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.