Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005278

Physical Location & Seq

Genomic Coordinates Forward (+)

55039422 .. 55040423

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0379700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCACAACCTCAACCTCCTACTGCTCTTCCCCAATACTTGCAAGAAAGTGAGCTCAGCCAAGAAACCAGAGACATGATATCCACTCTACCTAGACAAAAAGGTTGGGTTGCAAATCATCTCCATCAGTACCAAGGCTTTTGGCACTCAACTAGGCAGATGCAAGGAGTCTTGGCGTGCCAAAAACACTTCCAGGCCCAAGATTCTGATATCCTTCTTGTTACTACTCCTAAATCAGGTACCACTTGGCTCAAGGCAATTTTGTTTTCCCTAGTTAAACGAGGAGAGCACTATCATCCAGACCCTCAACACCACCCTTTGCTCACAAAAAACCCTCATGTTCTTGTGCCCTTCTTGGAGCTCAATCTGTACCTTGAGAAACCGGTACCTGACCTCATGACCTCCTATGCCCCTCCTCGGCTCTTTTCAACTCACTTACCACTTGTGTCTCTACCGGAATCGGTCAAAGACTCTGCTTGCAAGGTTGTCTATTTGTGTAGAAACCCTAAGGACACATTTGTTTCACTCTGGCACTTCACAAACAGATTGAGACCCGAGGGTAGGGGAACCAATCCACTTGAAGAAGCATTGGAAAAGTTCTGCAGGGGAGTGAGTTTGTATGGACCCTTTTGGGATCATGTGTTGGGGTACTGGAATGAGAGCTTGAAAAGGCCTGAAAGGGTATTTTTCATCAAATATGAGGAAATGAAAGAACAACCCGGTTTTCACTTGAGGAGGCTAGCCGAGTTCTTGGGGTGCCCATTTTTCCCAGAAGAAGAGGCACAGGGAGTGGTGGACAACATCTTAAGGCTGTGCAGTTTTGAGACTCTGAGCAATTTGGATGTGAACAAAAATGGGAAGTTATCGTCCGGCGAGGAGCATAGTGCTTTCTTTCGGCGAGGGGAGGCTGGAGAGTGGAGGAATCTTTTGACAGCTAAGATGGCGGAACAGCTAGACCGTATCACTGAAGAGAAGTTGCAAGGTTCTGGATTAAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0017050 GO:0030148 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046467 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

333

Amino Acids

38.43

Weight (kDa)

6.71

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	68 - 330	8e-76	Sulfotransferase domain
Sulfotransfer_3	PF13469	161 - 255	8.2e-06	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23450 AT5G23450 AT5G23450 AT5G23450 AT5G23450
fragaria_vesca	FvH4_4g37380 FvH4_4g37380 FvH4_4g37380
malus_domestica	MD13G1000100.v1.1 MD16G1005700.v1.1 MD16G1005800.v1.1
prunus_persica	Prupe.1G584800_v2.0.a1
pyrus_communis	pycom13g00010 pycom2749g00100 pycom2749g00120
rosa_chinensis	RchiOBHm_Chr4g0447291
rosa_laevigata	RLG00000005589
rosa_multiflora	Rmu_co8061930.1_g000001 Rmu_sc0017601.1_g000001 Rmu_ssc0000396.1_g000006
rosa_roxburghii	Rroxscaffold_5G00387670
rosa_rugosa	Rorug04G0379600 Rorug04G0379600 Rorug04G0379700
rosa_samantha	Rh4AG440900 Rh4BG450000 Rh4CG467100 Rh4DG448400
rosa_wichuraiana	Rw4G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	239, 385
AccB1I	GGYRCC	3 cut(s)	239, 385, 756
AciI	CCGC	1 cut(s)	944
AclWI	GGATC	1 cut(s)	642
AcsI	RAATTY	1 cut(s)	994
AcuI	CTGAAG	1 cut(s)	987
AfaI	GTAC	5 cut(s)	131, 241, 371, 387, 650
AfiI	CCNNNNNNNGG	3 cut(s)	236, 417, 561
AflII	CTTAAG	1 cut(s)	805
AgeI	ACCGGT	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	429, 581, 667
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	5 cut(s)	55, 361, 663, 935, 952
AluI	AGCT	5 cut(s)	55, 361, 663, 935, 952
Alw21I	GWGCWC	3 cut(s)	57, 291, 363
Alw26I	GTCTC	4 cut(s)	66, 453, 544, 818
AlwI	GGATC	1 cut(s)	642
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	2 cut(s)	195, 671
ApoI	RAATTY	1 cut(s)	994
AsiGI	ACCGGT	1 cut(s)	382
Asp718I	GGTACC	2 cut(s)	239, 385
AspS9I	GGNCC	2 cut(s)	196, 623
AsuC2I	CCSGG	1 cut(s)	720
AsuNHI	GCTAGC	1 cut(s)	739
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	623
AxyI	CCTNAGG	1 cut(s)	507
BaeGI	GKGCMC	2 cut(s)	351, 761
BanI	GGYRCC	3 cut(s)	239, 385, 756
BanII	GRGCYC	2 cut(s)	57, 363
Bbv12I	GWGCWC	3 cut(s)	57, 291, 363
BccI	CCATC	2 cut(s)	132, 934
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	720
BcoDI	GTCTC	4 cut(s)	66, 453, 544, 818
BfaI	CTAG	5 cut(s)	93, 153, 272, 740, 953
BfmI	CTRYAG	1 cut(s)	601
BfrI	CTTAAG	1 cut(s)	805
BlpI	GCTNAGC	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	194, 720
Bme18I	GGWCC	1 cut(s)	623
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	196, 623
BmiI	GGNNCC	5 cut(s)	241, 387, 568, 625, 758
BmrFI	CCNGG	2 cut(s)	194, 720
BmsI	GCATC	1 cut(s)	150
BmtI	GCTAGC	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	930
Bpu1102I	GCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	3 cut(s)	236, 395, 751
BpuMI	CCSGG	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	3 cut(s)	133, 416, 555
BsaWI	WCCGGW	2 cut(s)	382, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 417, 561
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	656
Bse21I	CCTNAGG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	133, 416, 555
BseGI	GGATG	2 cut(s)	295, 847
BseLI	CCNNNNNNNGG	3 cut(s)	236, 417, 561
BseMII	CTCAG	2 cut(s)	70, 821
BseNI	ACTGG	1 cut(s)	656
BseRI	GAGGAG	4 cut(s)	297, 405, 748, 890
BseSI	GKGCMC	2 cut(s)	351, 761
BsgI	GTGCAG	1 cut(s)	835
BshFI	GGCC	2 cut(s)	197, 673
BshNI	GGYRCC	3 cut(s)	239, 385, 756
BshTI	ACCGGT	1 cut(s)	382
BsiHKAI	GWGCWC	3 cut(s)	57, 291, 363
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	4 cut(s)	383, 455, 720, 870
BslI	CCNNNNNNNGG	3 cut(s)	236, 417, 561
BsmAI	GTCTC	4 cut(s)	66, 453, 544, 818
BsnI	GGCC	2 cut(s)	197, 673
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	5 cut(s)	57, 291, 351, 363, 761
Bsp143I	GATC	1 cut(s)	634
Bsp1720I	GCTNAGC	1 cut(s)	56
BspACI	CCGC	1 cut(s)	944
BspANI	GGCC	2 cut(s)	197, 673
BspCNI	CTCAG	2 cut(s)	69, 822
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	5 cut(s)	241, 387, 568, 625, 758
BspMAI	CTGCAG	1 cut(s)	605
BspOI	GCTAGC	1 cut(s)	743
BspPI	GGATC	1 cut(s)	642
BspQI	GCTCTTC	1 cut(s)	33
BspT107I	GGYRCC	3 cut(s)	239, 385, 756
BspTI	CTTAAG	1 cut(s)	805
BspTNI	GGTCTC	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	656
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	3 cut(s)	133, 416, 555
BssMI	GATC	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	959
Bst6I	CTCTTC	3 cut(s)	33, 771, 963
BstAFI	CTTAAG	1 cut(s)	805
BstC8I	GCNNGC	3 cut(s)	178, 478, 741
BstDEI	CTNAG	4 cut(s)	56, 507, 830, 936
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	295, 847
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	4 cut(s)	66, 453, 544, 818
BstMBI	GATC	1 cut(s)	634
BstMWI	GCNNNNNNNGC	1 cut(s)	941
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	192, 718
BstSFI	CTRYAG	1 cut(s)	601
BstSLI	GKGCMC	2 cut(s)	351, 761
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	197, 673
BtsCI	GGATG	2 cut(s)	295, 847
BtsIMutI	CAGTG	1 cut(s)	963
Cac8I	GCNNGC	3 cut(s)	178, 478, 741
CciI	TCATGA	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	196, 623
Csp6I	GTAC	5 cut(s)	130, 240, 370, 386, 649
CspAI	ACCGGT	1 cut(s)	382
CviAII	CATG	4 cut(s)	76, 338, 397, 638
CviQI	GTAC	5 cut(s)	130, 240, 370, 386, 649
DdeI	CTNAG	4 cut(s)	56, 507, 830, 936
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
Eam1104I	CTCTTC	3 cut(s)	33, 771, 963
EarI	CTCTTC	3 cut(s)	33, 771, 963
EciI	GGCGGA	1 cut(s)	959
Ecl136II	GAGCTC	2 cut(s)	55, 361
Eco130I	CCWWGG	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	673
Eco24I	GRGCYC	2 cut(s)	57, 363
Eco31I	GGTCTC	1 cut(s)	544
Eco32I	GATATC	2 cut(s)	81, 211
Eco47I	GGWCC	1 cut(s)	623
Eco53kI	GAGCTC	2 cut(s)	55, 361
Eco57I	CTGAAG	1 cut(s)	987
Eco81I	CCTNAGG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	554
EcoICRI	GAGCTC	2 cut(s)	55, 361
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	192
EcoRV	GATATC	2 cut(s)	81, 211
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	2 cut(s)	57, 363
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	4 cut(s)	79, 341, 400, 641
FaiI	YATR	8 cut(s)	77, 339, 398, 408, 621, 639, 699, 882
FatI	CATG	4 cut(s)	75, 337, 396, 637
FokI	GGATG	2 cut(s)	282, 854
FriOI	GRGCYC	2 cut(s)	57, 363
FspBI	CTAG	5 cut(s)	93, 153, 272, 740, 953
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	2 cut(s)	197, 673
HapII	CCGG	4 cut(s)	383, 455, 720, 870
Hin1II	CATG	4 cut(s)	79, 341, 400, 641
HinfI	GANTC	6 cut(s)	168, 203, 458, 470, 826, 922
HpaII	CCGG	4 cut(s)	383, 455, 720, 870
Hpy166II	GTNNAC	2 cut(s)	796, 847
Hpy188I	TCNGA	2 cut(s)	208, 831
Hpy188III	TCNNGA	3 cut(s)	299, 397, 987
Hpy8I	GTNNAC	2 cut(s)	796, 847
HpyAV	CCTTC	2 cut(s)	224, 361
HpyCH4III	ACNGT	1 cut(s)	959
HpyCH4V	TGCA	7 cut(s)	43, 113, 163, 480, 603, 816, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	941
HpyF3I	CTNAG	4 cut(s)	56, 507, 830, 936
Hsp92II	CATG	4 cut(s)	79, 341, 400, 641
KpnI	GGTACC	2 cut(s)	243, 389
Kzo9I	GATC	1 cut(s)	634
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	358, 877
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	5 cut(s)	93, 153, 272, 740, 953
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	5 cut(s)	20, 593, 785, 788, 980
MhlI	GDGCHC	5 cut(s)	57, 291, 351, 363, 761
MluCI	AATT	3 cut(s)	258, 835, 994
MlyI	GAGTC	3 cut(s)	177, 464, 820
MseI	TTAA	3 cut(s)	276, 806, 992
MspCI	CTTAAG	1 cut(s)	805
MspI	CCGG	4 cut(s)	383, 455, 720, 870
MspR9I	CCNGG	2 cut(s)	194, 720
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	941
NciI	CCSGG	1 cut(s)	720
NdeII	GATC	1 cut(s)	634
NheI	GCTAGC	1 cut(s)	739
NlaIII	CATG	4 cut(s)	79, 341, 400, 641
NlaIV	GGNNCC	5 cut(s)	241, 387, 568, 625, 758
NmeAIII	GCCGAG	2 cut(s)	397, 769
PagI	TCATGA	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	203, 458, 922
PinAI	ACCGGT	1 cut(s)	382
PleI	GAGTC	3 cut(s)	176, 464, 820
PpsI	GAGTC	3 cut(s)	176, 464, 820
Psp124BI	GAGCTC	2 cut(s)	57, 363
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	5 cut(s)	241, 387, 568, 625, 758
PspPI	GGNCC	2 cut(s)	196, 623
PstI	CTGCAG	1 cut(s)	605
RsaI	GTAC	5 cut(s)	131, 241, 371, 387, 650
RsaNI	GTAC	5 cut(s)	130, 240, 370, 386, 649
SacI	GAGCTC	2 cut(s)	57, 363
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	276, 806, 992
Sau3AI	GATC	1 cut(s)	634
Sau96I	GGNCC	2 cut(s)	196, 623
SchI	GAGTC	3 cut(s)	177, 464, 820
ScrFI	CCNGG	2 cut(s)	194, 720
SduI	GDGCHC	5 cut(s)	57, 291, 351, 363, 761
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	623
SmlI	CTYRAG	4 cut(s)	251, 374, 730, 805
SmoI	CTYRAG	4 cut(s)	251, 374, 730, 805
Sse9I	AATT	3 cut(s)	258, 835, 994
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	1 cut(s)	944
SspMI	CTAG	5 cut(s)	93, 153, 272, 740, 953
SstI	GAGCTC	2 cut(s)	57, 363
StuI	AGGCCT	1 cut(s)	673
StyD4I	CCNGG	2 cut(s)	192, 718
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	959
TaqII	GACCGA	1 cut(s)	451
TasI	AATT	3 cut(s)	258, 835, 994
TfiI	GAWTC	3 cut(s)	203, 458, 922
Tru1I	TTAA	3 cut(s)	276, 806, 992
Tru9I	TTAA	3 cut(s)	276, 806, 992
TscAI	CASTG	1 cut(s)	970
TspDTI	ATGAA	2 cut(s)	679, 722
TspRI	CASTG	1 cut(s)	970
Vha464I	CTTAAG	1 cut(s)	805
VpaK11BI	GGWCC	1 cut(s)	623
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	1 cut(s)	994
XspI	CTAG	5 cut(s)	93, 153, 272, 740, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.