Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Forward (+)

2173225 .. 2174054

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1030400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTTCCTCTACGGCCATATCTTGCTATAGTTGTTGGGATTTGGCGATCAGTATCCTATGTCATGAATATTCTTACTACTCGTGAGGTAGATAATTTTATATCTAATACCTTCGGCTCTGTTTCCTCCTTATTTTGCAGGCACCGCATCTCCTTCGGAGGACGTCACATTAGGAAAACAATGGTAGCTCAAAGTAGAATAGTGTTGTTTTGGTATAGCACCACTTACCTTCTCCTTCAGAAAAACAAACCACAATACCAGCTGCTGGAGGCCGCACCTCTTGACCAAATCCAACCAGCGGTGCAGCTTGAGCTCTTAAATACCGAACAAGATGAACAAAACGTGCCAAATGAAGTTAATGAACAACCCGTAACAGTTGGAACAGTCGAATTAAACCAGCCACCAAGTGAATCACCGCCAATTGACTTTGTCCTAGAAGGTGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

150

Amino Acids

16.99

Weight (kDa)

5.34

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
AccB1I	GGYRCC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	265
AciI	CCGC	4 cut(s)	145, 273, 299, 416
AcoI	YGGCCR	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	265, 298
AluBI	AGCT	4 cut(s)	188, 262, 307, 313
AluI	AGCT	4 cut(s)	188, 262, 307, 313
Alw21I	GWGCWC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	265
AoxI	GGCC	2 cut(s)	14, 270
ApeKI	GCWGC	2 cut(s)	262, 304
AsuHPI	GGTGA	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	315
BauI	CACGAG	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	249, 316
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciVI	GTATCC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	3 cut(s)	263, 273, 305
BlsI	GCNGC	3 cut(s)	264, 274, 306
BmiI	GGNNCC	1 cut(s)	143
BmsI	GCATC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 298
Bse8I	GATNNNNATC	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	265, 298
BseXI	GCAGC	2 cut(s)	249, 316
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	2 cut(s)	16, 272
BshNI	GGYRCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	265, 298
BsnI	GGCC	2 cut(s)	16, 272
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	47
BspACI	CCGC	4 cut(s)	145, 273, 299, 416
BspANI	GGCC	2 cut(s)	16, 272
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	141
BssMI	GATC	1 cut(s)	47
BssNI	GRCGYC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	376, 385
BstACI	GRCGYC	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	140
BstKTI	GATC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 310
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	249, 316
BsuI	GTATCC	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	16, 272
Cac8I	GCNNGC	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	63
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	8 cut(s)	16, 117, 188, 262, 272, 307, 313, 400
CviKI_1	RGCY	8 cut(s)	16, 117, 188, 262, 272, 307, 313, 400
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
DraIII	CACNNNGTG	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	1 cut(s)	67
FaiI	YATR	6 cut(s)	19, 29, 60, 65, 101, 216
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	263, 273, 305
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	3 cut(s)	263, 273, 305
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	3 cut(s)	263, 273, 305
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	2 cut(s)	16, 272
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	67
HinfI	GANTC	1 cut(s)	410
HphI	GGTGA	1 cut(s)	405
Hpy188I	TCNGA	2 cut(s)	158, 240
Hpy188III	TCNNGA	3 cut(s)	64, 83, 281
HpyAV	CCTTC	5 cut(s)	121, 163, 239, 245, 431
HpyCH4III	ACNGT	2 cut(s)	376, 385
HpyCH4IV	ACGT	2 cut(s)	163, 342
HpyCH4V	TGCA	2 cut(s)	138, 304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 310
HpySE526I	ACGT	2 cut(s)	163, 342
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	47
LpnPI	CCDG	5 cut(s)	124, 251, 272, 309, 410
Lsp1109I	GCAGC	2 cut(s)	249, 316
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	163, 342
MaeIII	GTNAC	2 cut(s)	164, 370
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MfeI	CAATTG	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	94, 389, 420
MmeI	TCCRAC	2 cut(s)	316, 358
MnlI	CCTC	6 cut(s)	18, 79, 136, 152, 262, 288
MseI	TTAA	3 cut(s)	317, 357, 392
MspA1I	CMGCKG	2 cut(s)	262, 299
MunI	CAATTG	1 cut(s)	420
MwoI	GCNNNNNNNGC	2 cut(s)	144, 310
NdeII	GATC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	164
PagI	TCATGA	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	410
PflFI	GACNNNGTC	1 cut(s)	428
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	3 cut(s)	264, 274, 306
Psp124BI	GAGCTC	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	265
PsyI	GACNNNGTC	1 cut(s)	428
PvuII	CAGCTG	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	317, 357, 392
SatI	GCNGC	3 cut(s)	263, 273, 305
Sau3AI	GATC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	3 cut(s)	94, 389, 420
SsiI	CCGC	4 cut(s)	145, 273, 299, 416
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	376, 385
TaiI	ACGT	2 cut(s)	166, 345
TaqI	TCGA	1 cut(s)	387
TasI	AATT	3 cut(s)	94, 389, 420
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	3 cut(s)	317, 357, 392
Tru9I	TTAA	3 cut(s)	317, 357, 392
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	262, 304
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	4 cut(s)	80, 348, 366, 375
Tth111I	GACNNNGTC	1 cut(s)	428
Van91I	CCANNNNNTGG	1 cut(s)	265
XspI	CTAG	1 cut(s)	434
ZraI	GACGTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.