Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8376807.1

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1131

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8376807.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 622 bp

tgtaggacttgatgcctttcaggcagagaaagttatggaaacccttcgacagcttgcacaagatggacataccgttatttgctccatacatcagcctaggggttctgtttatgctaaatttgatgacatcgtgttgctaaccgaaggtgcacttgtgtatgctggtcctgcacatgatgaaccactgacatacttttctaaattcgggtaccattgcccagatcatgagaaccccgctgagtttctagctgatcttatatctgttgactacagctctgctgaaagtgtctactcttctcagaaaagaatagatgctcttgttgaatcattttcacaacaatcagcaccagttctgtatgcaactccgattacattaagggaaatctccaagaacagcaccaggttgagcaggaagagtagagttcagaagaagggaggttggtggaggcaattctcgttgctcctaaggcgtgcgtggatgcaggcttctcgtgatggacccacaaataaagttcgggcaagaatgtcagttgcatcagctcttatatttggttcagttttttggagaatgggtaggtcgcagacatcaatacaagacagaatgggattgcttcaggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

206

Amino Acids

23.18

Weight (kDa)

9.3

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	117, 201
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	324
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	4 cut(s)	53, 249, 274, 540
AluI	AGCT	4 cut(s)	53, 249, 274, 540
Alw21I	GWGCWC	1 cut(s)	152
Alw44I	GTGCAC	1 cut(s)	148
ApaLI	GTGCAC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	117, 201
Asp700I	GAANNNNTTC	1 cut(s)	43
Asp718I	GGTACC	1 cut(s)	208
AspA2I	CCTAGG	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	165, 498
AvaII	GGWCC	2 cut(s)	165, 498
AvrII	CCTAGG	1 cut(s)	96
AxyI	CCTNAGG	1 cut(s)	465
BaeGI	GKGCMC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	152
BccI	CCATC	2 cut(s)	57, 489
BcgI	CGANNNNNNTGC	2 cut(s)	471, 505
BciT130I	CCWGG	1 cut(s)	401
BfaI	CTAG	2 cut(s)	97, 246
BfmI	CTRYAG	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	21
BlnI	CCTAGG	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	2 cut(s)	165, 498
BmgT120I	GGNCC	2 cut(s)	165, 498
BmiI	GGNNCC	2 cut(s)	210, 500
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	4 cut(s)	2, 302, 469, 543
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bse1I	ACTGG	1 cut(s)	348
Bse21I	CCTNAGG	1 cut(s)	465
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	484
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	229, 312
BseNI	ACTGG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	221, 251
BspACI	CCGC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	230, 311
BspHI	TCATGA	1 cut(s)	224
BspLI	GGNNCC	2 cut(s)	210, 500
BspT107I	GGYRCC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	221, 251
BssSI	CACGAG	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	2 cut(s)	299, 408
BstC8I	GCNNGC	3 cut(s)	55, 472, 484
BstDEI	CTNAG	3 cut(s)	238, 298, 465
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	2 cut(s)	224, 254
BstMBI	GATC	2 cut(s)	221, 251
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 168, 467
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	3 cut(s)	55, 472, 484
CciI	TCATGA	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	165, 498
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	174, 225
CviJI	RGCY	6 cut(s)	53, 95, 249, 274, 486, 540
CviKI_1	RGCY	6 cut(s)	53, 95, 249, 274, 486, 540
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	3 cut(s)	238, 298, 465
DpnI	GATC	2 cut(s)	223, 253
DpnII	GATC	2 cut(s)	221, 251
Eam1104I	CTCTTC	2 cut(s)	299, 408
EarI	CTCTTC	2 cut(s)	299, 408
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	165, 498
Eco57I	CTGAAG	1 cut(s)	597
Eco81I	CCTNAGG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	177, 228
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FatI	CATG	2 cut(s)	173, 224
FauI	CCCGC	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	289
FokI	GGATG	1 cut(s)	491
FspBI	CTAG	2 cut(s)	97, 246
Hin1II	CATG	2 cut(s)	177, 228
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HinfI	GANTC	1 cut(s)	324
Hpy166II	GTNNAC	3 cut(s)	150, 266, 290
Hpy188I	TCNGA	3 cut(s)	301, 367, 427
Hpy188III	TCNNGA	2 cut(s)	225, 492
Hpy8I	GTNNAC	3 cut(s)	150, 266, 290
HpyAV	CCTTC	3 cut(s)	54, 138, 425
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	6 cut(s)	57, 150, 171, 360, 482, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 168, 467
HpyF3I	CTNAG	3 cut(s)	238, 298, 465
Hsp92II	CATG	2 cut(s)	177, 228
KpnI	GGTACC	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	221, 251
LmnI	GCTCC	2 cut(s)	87, 466
LweI	GCATC	4 cut(s)	2, 302, 469, 543
MabI	ACCWGGT	1 cut(s)	399
MaeI	CTAG	2 cut(s)	97, 246
MalI	GATC	2 cut(s)	223, 253
MboI	GATC	2 cut(s)	221, 251
MboII	GAAGA	3 cut(s)	286, 425, 440
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	3 cut(s)	117, 201, 450
MnlI	CCTC	2 cut(s)	429, 439
MroXI	GAANNNNTTC	1 cut(s)	43
MseI	TTAA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	3 cut(s)	21, 168, 467
NdeII	GATC	2 cut(s)	221, 251
NlaIII	CATG	2 cut(s)	177, 228
NlaIV	GGNNCC	2 cut(s)	210, 500
PagI	TCATGA	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	2 cut(s)	210, 500
PspPI	GGNCC	2 cut(s)	165, 498
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	375
Sau3AI	GATC	2 cut(s)	221, 251
Sau96I	GGNCC	2 cut(s)	165, 498
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	9 cut(s)	55, 149, 251, 276, 405, 440, 542, 579, 619
SexAI	ACCWGGT	1 cut(s)	399
SfaNI	GCATC	4 cut(s)	2, 302, 469, 543
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	2 cut(s)	165, 498
Sse9I	AATT	3 cut(s)	117, 201, 450
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	2 cut(s)	97, 246
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	47
TasI	AATT	3 cut(s)	117, 201, 450
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	148
VpaK11BI	GGWCC	2 cut(s)	165, 498
XapI	RAATTY	2 cut(s)	117, 201
XmaJI	CCTAGG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	43
XspI	CTAG	2 cut(s)	97, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.