Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005054.1

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1374

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005054.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 584 bp

aatcttttgcggcatctgctatgggtctcacagttggtgctatggttccaaccactgaagcagctatggcagtgggaccatcacttatgaccgtttttcttgtatttggaggttattatgtgaatgcaaagaatacaccaattatctttcgttggattcctcatgcatcccttatcagatgggcttttcaagggctctgcaccaacgagtttcgcggtcttcagtttgagcatcaacattcttttgatattcaagatggagaacaggcacttgaacgcatctcctttggaggaagtcatattagggaaaccgtggtagctcaaagtagaatactgttgttttggtattgcaccacttacctactgatggagaaaaacaaaccgaaataccagcggctggaggctgcacctcttgaacaaacccaaccagcagcactgcagcttgggccaataaataccgaacaagttgaagaacaagaccagtcagatgaacctgtaacacccaaacaagttgaactagaccagccacttgaatcacctccgattgaccaagacccaccatttatcctagaaggtgctaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

193

Amino Acids

21.58

Weight (kDa)

4.78

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccII	CGCG	1 cut(s)	215
AciI	CCGC	3 cut(s)	10, 215, 393
AcuI	CTGAAG	2 cut(s)	77, 205
AfiI	CCNNNNNNNGG	2 cut(s)	366, 396
AgsI	TTSAA	7 cut(s)	190, 253, 274, 415, 469, 514, 532
AluBI	AGCT	3 cut(s)	64, 319, 441
AluI	AGCT	3 cut(s)	64, 319, 441
Alw26I	GTCTC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	396
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	4 cut(s)	61, 403, 430, 438
AspS9I	GGNCC	2 cut(s)	76, 445
AsuHPI	GGTGA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	4 cut(s)	73, 390, 442, 450
BccI	CCATC	4 cut(s)	87, 173, 250, 360
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	2 cut(s)	517, 568
BfmI	CTRYAG	1 cut(s)	436
BisI	GCNGC	6 cut(s)	11, 62, 394, 404, 431, 439
BlsI	GCNGC	6 cut(s)	12, 63, 395, 405, 432, 440
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 445
BmiI	GGNNCC	2 cut(s)	47, 77
BmsI	GCATC	4 cut(s)	22, 175, 240, 287
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 396
Bse1I	ACTGG	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	366, 396
BseNI	ACTGG	1 cut(s)	480
BseXI	GCAGC	4 cut(s)	73, 390, 442, 450
BsgI	GTGCAG	2 cut(s)	183, 389
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	366, 396
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	447
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	197
BspACI	CCGC	3 cut(s)	10, 215, 393
BspANI	GGCC	1 cut(s)	447
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	47, 77
BspMAI	CTGCAG	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	311
Bst4CI	ACNGT	4 cut(s)	33, 93, 312, 335
BstDEI	CTNAG	1 cut(s)	578
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 67, 444
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	4 cut(s)	73, 390, 442, 450
BstV2I	GAAGAC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	2 cut(s)	77, 433
BtsIMutI	CAGTG	3 cut(s)	53, 77, 433
CaiI	CAGNNNCTG	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	76, 445
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	9 cut(s)	64, 184, 195, 319, 396, 403, 441, 447, 525
CviKI_1	RGCY	9 cut(s)	64, 184, 195, 319, 396, 403, 441, 447, 525
DdeI	CTNAG	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	77, 205
EcoT22I	ATGCAT	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	1 cut(s)	166
FaiI	YATR	7 cut(s)	22, 43, 67, 88, 119, 164, 299
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	6 cut(s)	11, 62, 394, 404, 431, 439
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	6 cut(s)	11, 62, 394, 404, 431, 439
FspBI	CTAG	2 cut(s)	517, 568
GluI	GCNGC	6 cut(s)	11, 62, 394, 404, 431, 439
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	447
Hin1II	CATG	1 cut(s)	166
HinfI	GANTC	2 cut(s)	156, 532
HphI	GGTGA	1 cut(s)	527
Hpy188I	TCNGA	3 cut(s)	178, 486, 542
Hpy188III	TCNNGA	2 cut(s)	253, 412
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	4 cut(s)	33, 93, 312, 335
HpyCH4V	TGCA	6 cut(s)	127, 166, 200, 350, 406, 438
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 67, 444
HpyF3I	CTNAG	1 cut(s)	578
Hsp92II	CATG	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	250, 382, 403, 440, 493, 506, 535
Lsp1109I	GCAGC	4 cut(s)	73, 390, 442, 450
LweI	GCATC	4 cut(s)	22, 175, 240, 287
MaeI	CTAG	2 cut(s)	517, 568
MaeIII	GTNAC	1 cut(s)	495
MboII	GAAGA	2 cut(s)	211, 481
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	73, 133
MnlI	CCTC	6 cut(s)	103, 170, 283, 393, 419, 548
Mph1103I	ATGCAT	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	129
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	16, 67, 444
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	47, 77
NsiI	ATGCAT	1 cut(s)	168
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	156, 532
PflMI	CCANNNNNTGG	1 cut(s)	396
PkrI	GCNGC	6 cut(s)	12, 63, 395, 405, 432, 440
PspN4I	GGNNCC	2 cut(s)	47, 77
PspPI	GGNCC	2 cut(s)	76, 445
PstI	CTGCAG	1 cut(s)	440
PstNI	CAGNNNCTG	1 cut(s)	396
SatI	GCNGC	6 cut(s)	11, 62, 394, 404, 431, 439
Sau96I	GGNCC	2 cut(s)	76, 445
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	9 cut(s)	66, 114, 321, 362, 411, 443, 495, 540, 576
SfaNI	GCATC	4 cut(s)	22, 175, 240, 287
SfcI	CTRYAG	1 cut(s)	436
SinI	GGWCC	1 cut(s)	76
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	3 cut(s)	10, 215, 393
SspMI	CTAG	2 cut(s)	517, 568
TaaI	ACNGT	4 cut(s)	33, 93, 312, 335
TasI	AATT	1 cut(s)	140
TauI	GCSGC	2 cut(s)	13, 396
TfiI	GAWTC	2 cut(s)	156, 532
TscAI	CASTG	3 cut(s)	60, 77, 440
TseI	GCWGC	4 cut(s)	61, 403, 430, 438
TspDTI	ATGAA	1 cut(s)	503
TspRI	CASTG	3 cut(s)	60, 77, 440
Van91I	CCANNNNNTGG	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	76
XspI	CTAG	2 cut(s)	517, 568
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.