Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Reverse (-)

80248798 .. 80251580

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAAGCCACGAGGAACTTCCTCCGCTGAGCTTAATATGAAAGGAGGAGGACTGCGTGTGAGGCATCATCAAGAAATGGAAACTTTAACACTTACGACAAGGCCAGTAAAGACATTAAAGTATTTCACTGTGGCAATTGGCAGCTTACCTTACATTCTTGTAGTTCCTGATTCTGGTTTCCTAAGTAATTTTGTGGTTGATCCTTTCCTTTATGTCCAGATAATTGCTCCTCTTATGCAGCATGCCCCGACCAAGTTTGGGAGGTTAGATTATGTTAAAAGGTCTACTTGGCTGGACAGCTTGGCTGAAAGTGTCTATTCTTCTCAAAAAAGAAAAGATGCTCTTGTTGAATCATTTTCACAACAATCATCACTAGTTCTGTATGCAACTCCGATTACATTAAGGGAAATCTCCAGGAACAGCATCAGGTTGAGCAAGAAGAGTAGAGTTCACAAGAAGGGAGGTTGGTGGAGGCAATTCTGGTTGCTCCTAAGGCTTGCATGGATGCAGTGCCATGGAGATGTTTATCGAGTAGAGTGGACAGAGCAGGTTGATGGATTTTGGTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

191

Amino Acids

22.0

Weight (kDa)

9.92

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	284
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	173, 258
AgsI	TTSAA	1 cut(s)	350
AhlI	ACTAGT	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	3 cut(s)	31, 144, 300
AluI	AGCT	3 cut(s)	31, 144, 300
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	141, 238
AxyI	CCTNAGG	1 cut(s)	491
BauI	CACGAG	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	153, 250
BccI	CCATC	1 cut(s)	548
BciT130I	CCWGG	1 cut(s)	415
BcuI	ACTAGT	1 cut(s)	373
BfaI	CTAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	142, 239
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	2 cut(s)	143, 240
Bme1390I	CCNGG	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	4 cut(s)	73, 328, 432, 495
BpmI	CTGGAG	1 cut(s)	397
Bpu1102I	GCTNAGC	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 258
Bse1I	ACTGG	1 cut(s)	104
Bse21I	CCTNAGG	1 cut(s)	491
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	1 cut(s)	510
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	173, 258
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	2 cut(s)	60, 219
BseXI	GCAGC	2 cut(s)	153, 250
BshFI	GGCC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	173, 258
BsnI	GGCC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	199
Bsp1720I	GCTNAGC	1 cut(s)	27
Bsp19I	CCATGG	1 cut(s)	514
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	514
Bst2BI	CACGAG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	243, 498
BstDEI	CTNAG	3 cut(s)	27, 182, 491
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	1 cut(s)	510
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 493
BstNI	CCWGG	1 cut(s)	415
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	153, 250
Bsu36I	CCTNAGG	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	510
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	2 cut(s)	126, 515
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	2 cut(s)	243, 498
CviAII	CATG	3 cut(s)	242, 501, 515
CviJI	RGCY	8 cut(s)	7, 31, 103, 144, 292, 300, 305, 496
CviKI_1	RGCY	8 cut(s)	7, 31, 103, 144, 292, 300, 305, 496
DdeI	CTNAG	3 cut(s)	27, 182, 491
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	514
Eco81I	CCTNAGG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	514
FaeI	CATG	3 cut(s)	245, 504, 518
FaiI	YATR	8 cut(s)	38, 213, 236, 243, 273, 384, 502, 516
FalI	AAGNNNNNCTT	4 cut(s)	271, 303, 327, 359
FatI	CATG	3 cut(s)	241, 500, 514
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	2 cut(s)	142, 239
FokI	GGATG	1 cut(s)	517
Fsp4HI	GCNGC	2 cut(s)	142, 239
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	2 cut(s)	142, 239
GsuI	CTGGAG	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	245, 504, 518
HinfI	GANTC	2 cut(s)	170, 350
Hpy166II	GTNNAC	3 cut(s)	285, 451, 540
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	3 cut(s)	71, 167, 217
Hpy8I	GTNNAC	3 cut(s)	285, 451, 540
HpyAV	CCTTC	1 cut(s)	451
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	5 cut(s)	238, 386, 500, 508, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 493
HpyF3I	CTNAG	3 cut(s)	27, 182, 491
Hsp92II	CATG	3 cut(s)	245, 504, 518
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	232, 492
Lsp1109I	GCAGC	2 cut(s)	153, 250
LweI	GCATC	4 cut(s)	73, 328, 432, 495
MaeI	CTAG	1 cut(s)	374
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	312, 451
MfeI	CAATTG	1 cut(s)	135
MluCI	AATT	4 cut(s)	135, 187, 222, 476
MnlI	CCTC	9 cut(s)	5, 31, 38, 41, 54, 240, 255, 455, 465
MseI	TTAA	5 cut(s)	33, 86, 116, 276, 401
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	2 cut(s)	61, 493
NcoI	CCATGG	1 cut(s)	514
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	245, 504, 518
NspI	RCATGY	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	170, 350
PfoI	TCCNGGA	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	143, 240
Psp6I	CCWGG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	5 cut(s)	33, 86, 116, 276, 401
SatI	GCNGC	2 cut(s)	142, 239
Sau3AI	GATC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	415
SetI	ASST	9 cut(s)	33, 146, 151, 266, 284, 302, 431, 466, 552
SfaNI	GCATC	4 cut(s)	73, 328, 432, 495
SmiMI	CAYNNNNRTG	1 cut(s)	519
SpeI	ACTAGT	1 cut(s)	373
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	4 cut(s)	135, 187, 222, 476
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	529
TasI	AATT	4 cut(s)	135, 187, 222, 476
TfiI	GAWTC	2 cut(s)	170, 350
Tru1I	TTAA	5 cut(s)	33, 86, 116, 276, 401
Tru9I	TTAA	5 cut(s)	33, 86, 116, 276, 401
TscAI	CASTG	2 cut(s)	133, 515
TseI	GCWGC	2 cut(s)	141, 238
TspDTI	ATGAA	2 cut(s)	17, 53
TspRI	CASTG	2 cut(s)	133, 515
XceI	RCATGY	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	284
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.