Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Reverse (-)

9431301 .. 9432061

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG107500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTACCATTGGCCAGATCAAAAGAAAGATGCTCTTGTTGAATCATTTTCACAACAATCATCACTAGTTCTGTATGCAACTCCGATTACATTAAGGGAAATCTCCAAGAACAGCACCGGGTTGAGCAGGAAGAGTAGAGTTCAGAAGAAGGGAGGTTGGTGGAGGCAATTCTGGTTGCTCCTAAGGCTTGCGTGGATGCAGGCTTCTCATGATGGAACCACAAATAAAGTTCAGGAAAGAATGTCAATTTCATCAACTCTTATATTTGGGTCAGTTTTTGGAGAATGGGAAGTTCTCAGACACCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

102

Amino Acids

11.94

Weight (kDa)

10.08

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	11
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	41
AhlI	ACTAGT	1 cut(s)	64
AoxI	GGCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	118
AxyI	CCTNAGG	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	13
BccI	CCATC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	118
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	19, 186
BpuMI	CCSGG	1 cut(s)	118
Bse21I	CCTNAGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	117
BsnI	GGCC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	217
BssMI	GATC	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	189, 201
BstDEI	CTNAG	2 cut(s)	182, 296
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	116
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	189, 201
CciI	TCATGA	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	3 cut(s)	13, 187, 203
CviKI_1	RGCY	3 cut(s)	13, 187, 203
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	182, 296
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco81I	CCTNAGG	1 cut(s)	182
FaeI	CATG	1 cut(s)	212
FaiI	YATR	3 cut(s)	75, 210, 263
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	1 cut(s)	208
FokI	GGATG	1 cut(s)	208
FspBI	CTAG	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	117
Hpy188I	TCNGA	3 cut(s)	84, 144, 299
Hpy188III	TCNNGA	2 cut(s)	209, 233
HpyAV	CCTTC	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	77, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	2 cut(s)	182, 296
Hsp92II	CATG	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	6 cut(s)	27, 112, 130, 157, 185, 218
LweI	GCATC	2 cut(s)	19, 186
MaeI	CTAG	1 cut(s)	65
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	2 cut(s)	142, 157
MlsI	TGGCCA	1 cut(s)	13
MluCI	AATT	2 cut(s)	167, 246
MluNI	TGGCCA	1 cut(s)	13
MnlI	CCTC	2 cut(s)	146, 156
Mox20I	TGGCCA	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	13
MseI	TTAA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	13
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	217
PagI	TCATGA	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	217
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	118
SetI	ASST	1 cut(s)	157
SfaNI	GCATC	2 cut(s)	19, 186
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	2 cut(s)	167, 246
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	116
TasI	AATT	2 cut(s)	167, 246
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	240
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.