Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Reverse (-)

68732170 .. 68737019

Gene Structure 4850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG381300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2202 bp

ATGGCTCAATTTGGCGGGAAAAAAGTGGGCCAGATGGTTTTGGGCTTTGGAGGCAACCCCTTGGGCCAGGCTCTGGCCGCAGTCGCCGCCGCTCTCCTGCTCCGCCTCTTCTCCGGCCCTGGCCCAGCCCTCTTGCCGGACTCAGAATTCGCCGAGGAAGACGACGACGACGACGTGATCAACGAAAAAGGCGAAACTCCGGTCGCCGGAAAAGTCGTTCCGGTTACAATCCGGTGGCGCAACATCACCTGCTCTCTCTCCGACAAATCTTCCATATCAGTCAGGTTTCTGCTGAATGACGTCAGCGGAGAAGCGAAACCGGGTAGGCTATTGGCGATAATGGGGCCGTCCGGGTCGGGAAAGACGACGCTGCTAAATGTACTCGCCGGTCAGCTAAGTGCTTCTCAAAAGTTGAGCTTATCGGGACTATTAGAGTTCAATGGAAATCCTGGCCCAAACAAAGCCTATAAGATTGCTTATGTGAGACAGGAGGATCTGTTTTTCTCGCAGCTGACGGTGCGAGAGACGTTGTCTCTTGCCGCCGAGCTGCAACTTCCGGAGTTATCTTCCCCGGAAGCAAGATTGGATTATGTGAACAGTCTGTTGTTCAAAATGGGATTGGTTAGCTGTGCTGATACCAATGTTGGGGATGCAAAAGTCCGAGGAATTAGTGGGGGTGAAAAGAAACGTTTGTCTGTGGCTTGTGAGCTGATTGCAAGCCCCTCTGTTATATTTGCTGATGAACCGACTACTGGACTTGATGCCTTTCAGGCAGAGAAAGTTATGGAAACCCTTCGACAGCTTGTACAAGATGGACATACCGTTATTTGCTCCATACATCAGCCTAGGGGTTCTGTTTATGCTAAATTTGATGACATCGTGTTGCTAACTGAAGGTGCACTTGTGTATGCTGGTCCTGCACATGATGAACCACTGACATACTTTTCTAAATTCGGGTACCATTGCCCAGATCATGAGAACCCCGCTGAGTTTCTAGCTGATCTTATATCTGTTGACTACAGCTCTGCTGAAAGTGTCTACTCTTCTCAGAAAAGAATAGATGCTCTTGTTGAATCATTTTCACAACAATCATCACCAGTTCTGTATGCAACTCCGATTACATTAAGGGAAATCTCCAAGAACAGCACCAGGTTGAGCAGGAAGAGTAGAGTTCAGAAGAAGGGAGGTTGGTGGAGGCAATTCTGGTTGCTCCTAAGGCGTGCGTGGATGCAGGCTTCTCGTGATGGACCCACAAATAAAGTTCGGGCAAGAATGTCAGTTGCATCAGCTCTTATATTTGGGTCAGTTTTTTGGAGAATGGGTAGGTCGCAGACATCAATACAAGACAGAATGGGATTGCTTCAGGTTGCTGCAATAAACACAGCAATGGCGGCTCTGACAAAGACTGTCGGTGTGTTTCCAAAGGAGCGTGCAATAGTAAATAGAGAGCATGCAAAAGGGTCTTATACATTAGGACCCTATCTCCTTTCTAAGTTGTTGGCTGAGATTCCCATTGGAGCAGCATTTCCATTAATGTTTGGTTCTGTTTTGTACCCCATGGCTCGTCTTCATCCTACTTTATCCAGATTTGGGAAGTTTTGTGGTATTGTGACCCTAGAATCTTTTGCGGCATCTGCTATGGGTCTCACAGTTGGTGCTATGGTTCCAACCACTGAAGCAGCTATGGCAGTGGGACCATCACTTATGACAGTTTTTCTTGTATTTGGAGGTTATTATGTGAATGCAAAGAATACACCAATTATCTTTCGTTGGATTCCTCATGCATCTCTAATCAGATGGGCTTTTCAAGGGCTCTGCACCAACGAGTTTCGCGGTCTTCAGTTTGAGCATCAACATTCTTTTGATATTCAAGATGGAGAACAGGCACTTGAACGCATCTCCTTTGGAGGAAGTCATATTAGGGAAACCGTGGTAGCTCAAAGTAGAATACTGTTGTTTTGGTATTGCACCACTTACCTACTGATGGAGAAAAACAAACCGAAATACCAGCAGCTGGAGGCTGCACCTCTTGAACAAACCCAACCAGCAGCACTGCAGCTTGGGCCAATAAATACCGAACAAGTTGAAGAACAAGACCAGTCAGATGAACCTGTAACACCCAAACAAGTTGAACTAGACCAGCCACTTGAATCACCTCCGATTGACCAAGACCCACCGTTTATCCTAGAAGGTGCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

733

Amino Acids

80.18

Weight (kDa)

6.2

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	98 - 251	2.2e-24	ABC transporter
ABC2_membrane_7	PF19055	280 - 337	2.7e-06	ABC-2 type transporter
ABC2_membrane	PF01061	399 - 610	9.2e-49	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
AatII	GACGTC	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	257
Acc65I	GGTACC	1 cut(s)	957
AccB1I	GGYRCC	1 cut(s)	957
AccB7I	CCANNNNNTGG	2 cut(s)	73, 2014
AccBSI	CCGCTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	1038
AccII	CGCG	1 cut(s)	1833
AccIII	TCCGGA	1 cut(s)	556
AclI	AACGTT	1 cut(s)	688
AclWI	GGATC	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	3 cut(s)	146, 866, 950
AcuI	CTGAAG	4 cut(s)	912, 1346, 1695, 1823
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	4 cut(s)	381, 807, 959, 1553
AfiI	CCNNNNNNNGG	8 cut(s)	73, 136, 206, 645, 752, 1590, 1984, 2014
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	4 cut(s)	66, 118, 448, 1148
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
Alw21I	GWGCWC	1 cut(s)	901
Alw26I	GTCTC	4 cut(s)	478, 518, 537, 1649
Alw44I	GTGCAC	1 cut(s)	897
AlwI	GGATC	1 cut(s)	501
AlwNI	CAGNNNCTG	2 cut(s)	73, 2014
Aor13HI	TCCGGA	1 cut(s)	556
AoxI	GGCC	8 cut(s)	28, 64, 75, 115, 121, 344, 451, 2063
ApaLI	GTGCAC	1 cut(s)	897
ApoI	RAATTY	3 cut(s)	146, 866, 950
ArsI	GACNNNNNNTTYG	4 cut(s)	131, 163, 186, 218
AseI	ATTAAT	1 cut(s)	1532
Asp700I	GAANNNNTTC	1 cut(s)	792
Asp718I	GGTACC	1 cut(s)	957
AspA2I	CCTAGG	1 cut(s)	845
AspLEI	GCGC	1 cut(s)	240
AsuC2I	CCSGG	3 cut(s)	321, 352, 572
AsuHPI	GGTGA	4 cut(s)	238, 689, 1086, 2145
AvaII	GGWCC	4 cut(s)	914, 1247, 1475, 1694
AvrII	CCTAGG	1 cut(s)	845
AxyI	CCTNAGG	1 cut(s)	1214
BaeGI	GKGCMC	1 cut(s)	901
BaeI	ACNNNNGTAYC	2 cut(s)	627, 660
BanI	GGYRCC	1 cut(s)	957
BanII	GRGCYC	1 cut(s)	1815
BauI	CACGAG	1 cut(s)	1239
BbsI	GAAGAC	3 cut(s)	165, 1559, 1829
Bbv12I	GWGCWC	1 cut(s)	901
BccI	CCATC	7 cut(s)	28, 806, 1238, 1705, 1791, 1868, 1978
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	1220, 1254
BciT130I	CCWGG	4 cut(s)	68, 120, 450, 1150
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	3 cut(s)	321, 352, 572
BcoDI	GTCTC	4 cut(s)	478, 518, 537, 1649
BfaI	CTAG	5 cut(s)	846, 995, 1616, 2135, 2186
BfmI	CTRYAG	2 cut(s)	1018, 2054
BfuAI	ACCTGC	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	770
BlnI	CCTAGG	1 cut(s)	845
Bme1390I	CCNGG	7 cut(s)	68, 120, 321, 352, 450, 572, 1150
Bme18I	GGWCC	4 cut(s)	914, 1247, 1475, 1694
BmgBI	CACGTC	1 cut(s)	175
BmiI	GGNNCC	6 cut(s)	345, 959, 1249, 1477, 1665, 1695
BmrFI	CCNGG	7 cut(s)	68, 120, 321, 352, 450, 572, 1150
BmsI	GCATC	9 cut(s)	640, 751, 1051, 1218, 1292, 1640, 1793, 1858, 1905
BpiI	GAAGAC	3 cut(s)	165, 1559, 1829
BpmI	CTGGAG	1 cut(s)	2036
BpuMI	CCSGG	3 cut(s)	321, 352, 572
BsaHI	GRCGYC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	1649
BsaJI	CCNNGG	8 cut(s)	60, 118, 153, 570, 661, 845, 1557, 1929
BsaWI	WCCGGW	4 cut(s)	199, 220, 231, 556
BsaXI	ACNNNNNCTCC	6 cut(s)	482, 512, 1306, 1336, 1467, 1497
Bsc4I	CCNNNNNNNGG	8 cut(s)	73, 136, 206, 645, 752, 1590, 1984, 2014
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	3 cut(s)	757, 1097, 2098
Bse21I	CCTNAGG	1 cut(s)	1214
Bse3DI	GCAATG	2 cut(s)	961, 1392
BseAI	TCCGGA	1 cut(s)	556
BseBI	CCWGG	4 cut(s)	68, 120, 450, 1150
BseDI	CCNNGG	8 cut(s)	60, 118, 153, 570, 661, 845, 1557, 1929
BseGI	GGATG	3 cut(s)	655, 1233, 1570
BseLI	CCNNNNNNNGG	8 cut(s)	73, 136, 206, 645, 752, 1590, 1984, 2014
BseMI	GCAATG	2 cut(s)	961, 1392
BseMII	CTCAG	4 cut(s)	156, 978, 1061, 1494
BseNI	ACTGG	3 cut(s)	757, 1097, 2098
BseSI	GKGCMC	1 cut(s)	901
BseYI	CCCAGC	1 cut(s)	124
BsgI	GTGCAG	3 cut(s)	903, 1801, 2007
Bsh1236I	CGCG	1 cut(s)	1833
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	8 cut(s)	30, 66, 77, 117, 123, 346, 453, 2065
BshNI	GGYRCC	1 cut(s)	957
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	901
BslFI	GGGAC	2 cut(s)	438, 1707
BslI	CCNNNNNNNGG	8 cut(s)	73, 136, 206, 645, 752, 1590, 1984, 2014
BsmAI	GTCTC	4 cut(s)	478, 518, 537, 1649
BsmBI	CGTCTC	1 cut(s)	518
BsmFI	GGGAC	2 cut(s)	438, 1707
BsmI	GAATGC	1 cut(s)	1747
BsnI	GGCC	8 cut(s)	30, 66, 77, 117, 123, 346, 453, 2065
Bso31I	GGTCTC	1 cut(s)	1649
Bsp1286I	GDGCHC	2 cut(s)	901, 1815
Bsp13I	TCCGGA	1 cut(s)	556
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	4 cut(s)	177, 493, 970, 1000
Bsp19I	CCATGG	1 cut(s)	1557
BspANI	GGCC	8 cut(s)	30, 66, 77, 117, 123, 346, 453, 2065
BspCNI	CTCAG	4 cut(s)	155, 979, 1060, 1495
BspEI	TCCGGA	1 cut(s)	556
BspFNI	CGCG	1 cut(s)	1833
BspHI	TCATGA	1 cut(s)	973
BspLI	GGNNCC	6 cut(s)	345, 959, 1249, 1477, 1665, 1695
BspMAI	CTGCAG	1 cut(s)	2058
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	957
BspTNI	GGTCTC	1 cut(s)	1649
BsrBI	CCGCTC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	961, 1392
BsrFI	RCCGGY	1 cut(s)	386
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	3 cut(s)	757, 1097, 2098
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	8 cut(s)	60, 118, 153, 570, 661, 845, 1557, 1929
BssMI	GATC	4 cut(s)	177, 493, 970, 1000
BssNI	GRCGYC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	1239
BssT1I	CCWWGG	3 cut(s)	60, 845, 1557
Bst2BI	CACGAG	1 cut(s)	1239
Bst2UI	CCWGG	4 cut(s)	68, 120, 450, 1150
Bst4CI	ACNGT	9 cut(s)	517, 599, 823, 1408, 1651, 1711, 1930, 1953, 2178
Bst6I	CTCTTC	3 cut(s)	113, 1048, 1157
BstACI	GRCGYC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	5 cut(s)	718, 1221, 1233, 1431, 1452
BstDEI	CTNAG	8 cut(s)	142, 395, 987, 1047, 1214, 1491, 1503, 2196
BstDSI	CCRYGG	2 cut(s)	1557, 1929
BstF5I	GGATG	3 cut(s)	655, 1233, 1570
BstFNI	CGCG	1 cut(s)	1833
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	4 cut(s)	180, 496, 973, 1003
BstMAI	GTCTC	4 cut(s)	478, 518, 537, 1649
BstMBI	GATC	4 cut(s)	177, 493, 970, 1000
BstMCI	CGRYCG	1 cut(s)	204
BstNI	CCWGG	4 cut(s)	68, 120, 450, 1150
BstNSI	RCATGY	1 cut(s)	1454
BstSCI	CCNGG	7 cut(s)	66, 118, 319, 350, 448, 570, 1148
BstSFI	CTRYAG	2 cut(s)	1018, 2054
BstSLI	GKGCMC	1 cut(s)	901
BstUI	CGCG	1 cut(s)	1833
BstV2I	GAAGAC	3 cut(s)	165, 1559, 1829
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
Bsu36I	CCTNAGG	1 cut(s)	1214
BsuRI	GGCC	8 cut(s)	30, 66, 77, 117, 123, 346, 453, 2065
BtgI	CCRYGG	2 cut(s)	1557, 1929
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	3 cut(s)	655, 1233, 1570
BtsI	GCAGTG	2 cut(s)	1695, 2051
BtsIMutI	CAGTG	4 cut(s)	932, 1671, 1695, 2051
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	5 cut(s)	718, 1221, 1233, 1431, 1452
CaiI	CAGNNNCTG	2 cut(s)	73, 2014
CciI	TCATGA	1 cut(s)	973
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	386
CseI	GACGC	1 cut(s)	376
CsiI	ACCWGGT	1 cut(s)	1148
Csp6I	GTAC	4 cut(s)	380, 806, 958, 1552
CviAII	CATG	5 cut(s)	923, 974, 1451, 1558, 1781
CviQI	GTAC	4 cut(s)	380, 806, 958, 1552
DdeI	CTNAG	8 cut(s)	142, 395, 987, 1047, 1214, 1491, 1503, 2196
DpnI	GATC	4 cut(s)	179, 495, 972, 1002
DpnII	GATC	4 cut(s)	177, 493, 970, 1000
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	3 cut(s)	113, 1048, 1157
EarI	CTCTTC	3 cut(s)	113, 1048, 1157
EciI	GGCGGA	1 cut(s)	92
Eco130I	CCWWGG	3 cut(s)	60, 845, 1557
Eco24I	GRGCYC	1 cut(s)	1815
Eco31I	GGTCTC	1 cut(s)	1649
Eco47I	GGWCC	4 cut(s)	914, 1247, 1475, 1694
Eco57I	CTGAAG	4 cut(s)	912, 1346, 1695, 1823
Eco81I	CCTNAGG	1 cut(s)	1214
EcoO109I	RGGNCCY	1 cut(s)	1475
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	4 cut(s)	66, 118, 448, 1148
EcoT14I	CCWWGG	3 cut(s)	60, 845, 1557
EcoT22I	ATGCAT	1 cut(s)	1786
EcoT38I	GRGCYC	1 cut(s)	1815
ErhI	CCWWGG	3 cut(s)	60, 845, 1557
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	5 cut(s)	926, 977, 1454, 1561, 1784
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 885, 917
FaqI	GGGAC	2 cut(s)	438, 1707
FatI	CATG	5 cut(s)	922, 973, 1450, 1557, 1780
FauI	CCCGC	2 cut(s)	8, 991
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	1038
FokI	GGATG	3 cut(s)	662, 1240, 1557
FriOI	GRGCYC	1 cut(s)	1815
FspBI	CTAG	5 cut(s)	846, 995, 1616, 2135, 2186
GlaI	GCGC	1 cut(s)	239
GsaI	CCCAGC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	2036
HaeIII	GGCC	8 cut(s)	30, 66, 77, 117, 123, 346, 453, 2065
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	240
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	5 cut(s)	926, 977, 1454, 1561, 1784
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HinfI	GANTC	6 cut(s)	140, 1073, 1507, 1619, 1774, 2150
HphI	GGTGA	4 cut(s)	238, 689, 1086, 2145
Hpy166II	GTNNAC	4 cut(s)	595, 899, 1015, 1039
Hpy188III	TCNNGA	8 cut(s)	357, 423, 557, 974, 1241, 1584, 1871, 2030
Hpy8I	GTNNAC	4 cut(s)	595, 899, 1015, 1039
Hpy99I	CGWCG	5 cut(s)	167, 170, 173, 176, 370
HpyAV	CCTTC	4 cut(s)	803, 887, 1174, 2183
HpyCH4III	ACNGT	9 cut(s)	517, 599, 823, 1408, 1651, 1711, 1930, 1953, 2178
HpyCH4IV	ACGT	4 cut(s)	174, 300, 527, 688
HpyF3I	CTNAG	8 cut(s)	142, 395, 987, 1047, 1214, 1491, 1503, 2196
HpySE526I	ACGT	4 cut(s)	174, 300, 527, 688
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	5 cut(s)	926, 977, 1454, 1561, 1784
HspAI	GCGC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	556
KpnI	GGTACC	1 cut(s)	961
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	177, 493, 970, 1000
LmnI	GCTCC	5 cut(s)	105, 836, 1215, 1426, 1517
LweI	GCATC	9 cut(s)	640, 751, 1051, 1218, 1292, 1640, 1793, 1858, 1905
MabI	ACCWGGT	1 cut(s)	1148
MaeI	CTAG	5 cut(s)	846, 995, 1616, 2135, 2186
MaeII	ACGT	4 cut(s)	174, 300, 527, 688
MaeIII	GTNAC	3 cut(s)	223, 1609, 2113
MalI	GATC	4 cut(s)	179, 495, 972, 1002
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	4 cut(s)	177, 493, 970, 1000
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	2 cut(s)	901, 1815
MluCI	AATT	7 cut(s)	8, 146, 666, 866, 950, 1199, 1758
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	3 cut(s)	285, 1691, 1751
Mph1103I	ATGCAT	1 cut(s)	1786
MroI	TCCGGA	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	792
MseI	TTAA	2 cut(s)	1124, 1532
MslI	CAYNNNNRTG	1 cut(s)	1385
MspA1I	CMGCKG	4 cut(s)	306, 511, 986, 2014
MspR9I	CCNGG	7 cut(s)	68, 120, 321, 352, 450, 572, 1150
Mva1269I	GAATGC	1 cut(s)	1747
MvaI	CCWGG	4 cut(s)	68, 120, 450, 1150
MvnI	CGCG	1 cut(s)	1833
NciI	CCSGG	3 cut(s)	321, 352, 572
NcoI	CCATGG	1 cut(s)	1557
NdeII	GATC	4 cut(s)	177, 493, 970, 1000
NlaIII	CATG	5 cut(s)	926, 977, 1454, 1561, 1784
NlaIV	GGNNCC	6 cut(s)	345, 959, 1249, 1477, 1665, 1695
NmeAIII	GCCGAG	2 cut(s)	178, 568
NmuCI	GTSAC	1 cut(s)	1609
NsiI	ATGCAT	1 cut(s)	1786
NspI	RCATGY	1 cut(s)	1454
PaeI	GCATGC	1 cut(s)	1454
PagI	TCATGA	1 cut(s)	973
PaqCI	CACCTGC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	5 cut(s)	168, 171, 180, 189, 362
PctI	GAATGC	1 cut(s)	1747
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	5 cut(s)	1073, 1507, 1619, 1774, 2150
PflFI	GACNNNGTC	1 cut(s)	529
PflMI	CCANNNNNTGG	2 cut(s)	73, 2014
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PpuMI	RGGWCCY	1 cut(s)	1475
PshBI	ATTAAT	1 cut(s)	1532
Psp1406I	AACGTT	1 cut(s)	688
Psp5II	RGGWCCY	1 cut(s)	1475
Psp6I	CCWGG	4 cut(s)	66, 118, 448, 1148
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	4 cut(s)	66, 118, 448, 1148
PspN4I	GGNNCC	6 cut(s)	345, 959, 1249, 1477, 1665, 1695
PspPPI	RGGWCCY	1 cut(s)	1475
PstI	CTGCAG	1 cut(s)	2058
PstNI	CAGNNNCTG	2 cut(s)	73, 2014
PsuI	RGATCY	1 cut(s)	493
PsyI	GACNNNGTC	1 cut(s)	529
PvuII	CAGCTG	2 cut(s)	511, 2014
RsaI	GTAC	4 cut(s)	381, 807, 959, 1553
RsaNI	GTAC	4 cut(s)	380, 806, 958, 1552
RseI	CAYNNNNRTG	1 cut(s)	1385
SaqAI	TTAA	2 cut(s)	1124, 1532
Sau3AI	GATC	4 cut(s)	177, 493, 970, 1000
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	7 cut(s)	68, 120, 321, 352, 450, 572, 1150
SduI	GDGCHC	2 cut(s)	901, 1815
SexAI	ACCWGGT	1 cut(s)	1148
SfaNI	GCATC	9 cut(s)	640, 751, 1051, 1218, 1292, 1640, 1793, 1858, 1905
SfcI	CTRYAG	2 cut(s)	1018, 2054
SinI	GGWCC	4 cut(s)	914, 1247, 1475, 1694
SmiMI	CAYNNNNRTG	1 cut(s)	1385
SphI	GCATGC	1 cut(s)	1454
Sse9I	AATT	7 cut(s)	8, 146, 666, 866, 950, 1199, 1758
SspMI	CTAG	5 cut(s)	846, 995, 1616, 2135, 2186
StyD4I	CCNGG	7 cut(s)	66, 118, 319, 350, 448, 570, 1148
StyI	CCWWGG	3 cut(s)	60, 845, 1557
TaaI	ACNGT	9 cut(s)	517, 599, 823, 1408, 1651, 1711, 1930, 1953, 2178
TaiI	ACGT	4 cut(s)	177, 303, 530, 691
TaqI	TCGA	1 cut(s)	796
TasI	AATT	7 cut(s)	8, 146, 666, 866, 950, 1199, 1758
TatI	WGTACW	2 cut(s)	379, 805
TauI	GCSGC	6 cut(s)	80, 89, 92, 542, 1394, 1631
TfiI	GAWTC	5 cut(s)	1073, 1507, 1619, 1774, 2150
Tru1I	TTAA	2 cut(s)	1124, 1532
Tru9I	TTAA	2 cut(s)	1124, 1532
TscAI	CASTG	4 cut(s)	939, 1678, 1695, 2058
TseFI	GTSAC	1 cut(s)	1609
Tsp45I	GTSAC	1 cut(s)	1609
TspDTI	ATGAA	4 cut(s)	756, 942, 1559, 2121
TspRI	CASTG	4 cut(s)	939, 1678, 1695, 2058
Tth111I	GACNNNGTC	1 cut(s)	529
Van91I	CCANNNNNTGG	2 cut(s)	73, 2014
VneI	GTGCAC	1 cut(s)	897
VpaK11BI	GGWCC	4 cut(s)	914, 1247, 1475, 1694
VspI	ATTAAT	1 cut(s)	1532
XapI	RAATTY	3 cut(s)	146, 866, 950
XceI	RCATGY	1 cut(s)	1454
XmaJI	CCTAGG	1 cut(s)	845
XmiI	GTMKAC	1 cut(s)	1038
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	5 cut(s)	846, 995, 1616, 2135, 2186
ZraI	GACGTC	1 cut(s)	301
Zsp2I	ATGCAT	1 cut(s)	1786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.