Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Forward (+)

10463810 .. 10465570

Gene Structure 1761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG052700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTGCTTAGATTTGAAAGGGCTCTGCATCAACGAGTTTCGCAGTCTTCAATTTGAGCATCAACATTCTTTTGATATTCAAGATGGAGAACAAGCACTTGAACGCATCTCCTTTAGAGGAAGTCATATTAGGGAAACCGTGGTAGCTCAAAGTAGAATACTGTTGTTTTGGTATTGCTCCACTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

62

Amino Acids

7.37

Weight (kDa)

5.81

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	4 cut(s)	16, 50, 80, 101
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	38
BccI	CCATC	1 cut(s)	77
BmsI	GCATC	3 cut(s)	36, 67, 114
BpiI	GAAGAC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	139, 162
BstDEI	CTNAG	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	138
CviJI	RGCY	2 cut(s)	22, 146
CviKI_1	RGCY	2 cut(s)	22, 146
DdeI	CTNAG	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	24
FaiI	YATR	1 cut(s)	126
FriOI	GRGCYC	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	139, 162
HpyCH4V	TGCA	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	182
LweI	GCATC	3 cut(s)	36, 67, 114
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	50
MnlI	CCTC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	1 cut(s)	148
SfaNI	GCATC	3 cut(s)	36, 67, 114
SgeI	CNNG	5 cut(s)	46, 92, 104, 110, 151
Sse9I	AATT	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	139, 162
TasI	AATT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.