Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Forward (+)

1797108 .. 1798881

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTTCAATCAGGCGGGAAAAATGTGGGCCAGATGATATTAGGCATCGGCGGCAGCGGCCTGGGCCAGGCCCTTGCCGCCGTCGCCGCAGCTCTCTTGCTCCGCCTCATCTCCGGCCCAGGCCCAGCAATCTCACCAGAGGCTGAGGCCGGCGACGACTACACTGATGCGATAGACGACGAAGCCGAAACTCCGGATGTCGGAAAAGTGGTTCCGGTCACAATCCGGTGGCGCAACATCAACTGTTCCCTCTCTGACAAATCCTCCGCAGCTCGGAGAAGCGAAACCGGGGAGACTACTGGCGATTATGGGGCCGTCAGGATCAGGAAAGACGACGCTGCTGAATGTACTCGCGGGTCAGCTTGCTGCGTCACCGCGGCTACGTTTATCGGGATTGTTGGAGGTCAATGGCAATCCTACTTGTTTGCTTATGTGAGACAGGAGGACCTGTTTTTCTCGCAGCTGACGGTGAGAGAGACGTTGTCTCTTGCCGCGGAGCTGCAGCTTCCGGAGATATCTTCCTCCGAAGAAAGATTAGAGTATGTGAACGGCCTGTTGTTTAAGTTGGGATTGATTAGTTGTGCTGATACCATTGTTGGTGATGCGAAAGTCCGAGGAATCAGTGGGGGTGAAAAGAAACGACTGTCTGTGGCATGTGAGCTGATTGCAAGCCCCTCTGTTATATTTGCTGACGAACCCACTACTGAGGGTGCACTTGTCTATGCTGGTCCTGCACATGATGAACCACTAGCATACTTCTCTAAATTCGGGTACAATTGCCCAGATCGATGTGAACCCTGCGGAGTTTCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

272

Amino Acids

28.5

Weight (kDa)

4.59

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	354, 377, 494
AccIII	TCCGGA	2 cut(s)	193, 508
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	764
AfaI	GTAC	2 cut(s)	349, 773
AfiI	CCNNNNNNNGG	3 cut(s)	67, 200, 273
AgsI	TTSAA	1 cut(s)	8
AjnI	CCWGG	3 cut(s)	60, 66, 118
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	8 cut(s)	92, 272, 362, 463, 499, 505, 661, 813
AluI	AGCT	8 cut(s)	92, 272, 362, 463, 499, 505, 661, 813
Alw21I	GWGCWC	1 cut(s)	715
Alw26I	GTCTC	4 cut(s)	287, 430, 470, 489
Alw44I	GTGCAC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	143
Aor13HI	TCCGGA	2 cut(s)	193, 508
AoxI	GGCC	9 cut(s)	28, 58, 64, 69, 115, 121, 147, 312, 550
ApaLI	GTGCAC	1 cut(s)	711
ApeKI	GCWGC	8 cut(s)	54, 89, 269, 338, 366, 460, 499, 502
ApoI	RAATTY	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	8 cut(s)	28, 64, 70, 116, 122, 312, 445, 728
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	5 cut(s)	126, 364, 481, 611, 641
AvaII	GGWCC	2 cut(s)	445, 728
BaeGI	GKGCMC	1 cut(s)	715
BaeI	ACNNNNGTAYC	2 cut(s)	579, 612
Bbv12I	GWGCWC	1 cut(s)	715
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	8 cut(s)	66, 101, 281, 325, 353, 472, 486, 514
BceAI	ACGGC	3 cut(s)	65, 299, 565
BciT130I	CCWGG	3 cut(s)	62, 68, 120
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	4 cut(s)	287, 430, 470, 489
BfaI	CTAG	2 cut(s)	749, 810
BfmI	CTRYAG	1 cut(s)	500
Bme1390I	CCNGG	4 cut(s)	62, 68, 120, 289
Bme18I	GGWCC	2 cut(s)	445, 728
BmgT120I	GGNCC	8 cut(s)	28, 64, 70, 116, 122, 312, 445, 728
BmiI	GGNNCC	2 cut(s)	213, 313
BmrFI	CCNGG	4 cut(s)	62, 68, 120, 289
BmsI	GCATC	3 cut(s)	54, 157, 592
Bpu10I	CCTNAGC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	787
BsaJI	CCNNGG	6 cut(s)	61, 118, 288, 375, 492, 613
BsaWI	WCCGGW	4 cut(s)	193, 214, 225, 508
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 200, 273
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	304
BseAI	TCCGGA	2 cut(s)	193, 508
BseBI	CCWGG	3 cut(s)	62, 68, 120
BseCI	ATCGAT	1 cut(s)	787
BseDI	CCNNGG	6 cut(s)	61, 118, 288, 375, 492, 613
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	3 cut(s)	67, 200, 273
BseMII	CTCAG	2 cut(s)	135, 696
BseNI	ACTGG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	715
BseXI	GCAGC	8 cut(s)	66, 101, 281, 325, 353, 472, 486, 514
BseYI	CCCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	3 cut(s)	354, 377, 494
BshFI	GGCC	9 cut(s)	30, 60, 66, 71, 117, 123, 149, 314, 552
BshVI	ATCGAT	1 cut(s)	787
BsiHKAI	GWGCWC	1 cut(s)	715
BsiSI	CCGG	7 cut(s)	114, 150, 194, 215, 226, 288, 509
BslI	CCNNNNNNNGG	3 cut(s)	67, 200, 273
BsmAI	GTCTC	4 cut(s)	287, 430, 470, 489
BsmBI	CGTCTC	1 cut(s)	470
BsnI	GGCC	9 cut(s)	30, 60, 66, 71, 117, 123, 149, 314, 552
Bsp1286I	GDGCHC	1 cut(s)	715
Bsp13I	TCCGGA	2 cut(s)	193, 508
Bsp143I	GATC	2 cut(s)	321, 784
BspANI	GGCC	9 cut(s)	30, 60, 66, 71, 117, 123, 149, 314, 552
BspCNI	CTCAG	2 cut(s)	136, 697
BspDI	ATCGAT	1 cut(s)	787
BspEI	TCCGGA	2 cut(s)	193, 508
BspFNI	CGCG	3 cut(s)	354, 377, 494
BspLI	GGNNCC	2 cut(s)	213, 313
BspMAI	CTGCAG	1 cut(s)	504
BspPI	GGATC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	6 cut(s)	61, 118, 288, 375, 492, 613
BssMI	GATC	2 cut(s)	321, 784
Bst2UI	CCWGG	3 cut(s)	62, 68, 120
Bst4CI	ACNGT	3 cut(s)	245, 469, 645
BstC8I	GCNNGC	3 cut(s)	151, 364, 670
BstDEI	CTNAG	2 cut(s)	144, 705
BstDSI	CCRYGG	2 cut(s)	375, 492
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	3 cut(s)	354, 377, 494
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	2 cut(s)	324, 787
BstMAI	GTCTC	4 cut(s)	287, 430, 470, 489
BstMBI	GATC	2 cut(s)	321, 784
BstMWI	GCNNNNNNNGC	7 cut(s)	51, 57, 63, 77, 83, 86, 731
BstNI	CCWGG	3 cut(s)	62, 68, 120
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	4 cut(s)	60, 66, 118, 287
BstSFI	CTRYAG	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	715
BstUI	CGCG	3 cut(s)	354, 377, 494
BstV1I	GCAGC	8 cut(s)	66, 101, 281, 325, 353, 472, 486, 514
Bsu15I	ATCGAT	1 cut(s)	787
BsuRI	GGCC	9 cut(s)	30, 60, 66, 71, 117, 123, 149, 314, 552
BsuTUI	ATCGAT	1 cut(s)	787
BtgI	CCRYGG	2 cut(s)	375, 492
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	162, 628
Cac8I	GCNNGC	3 cut(s)	151, 364, 670
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	8 cut(s)	28, 64, 70, 116, 122, 312, 445, 728
Cfr42I	CCGCGG	2 cut(s)	378, 495
ClaI	ATCGAT	1 cut(s)	787
CseI	GACGC	2 cut(s)	344, 358
Csp6I	GTAC	2 cut(s)	348, 772
CviAII	CATG	2 cut(s)	654, 737
CviQI	GTAC	2 cut(s)	348, 772
DdeI	CTNAG	2 cut(s)	144, 705
DpnI	GATC	2 cut(s)	323, 786
DpnII	GATC	2 cut(s)	321, 784
EciI	GGCGGA	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	445, 728
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	2 cut(s)	70, 445
EcoRII	CCWGG	3 cut(s)	60, 66, 118
EcoRV	GATATC	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	2 cut(s)	657, 740
FaiI	YATR	8 cut(s)	309, 432, 543, 655, 683, 723, 738, 754
FatI	CATG	2 cut(s)	653, 736
FauI	CCCGC	2 cut(s)	8, 347
FokI	GGATG	1 cut(s)	209
FspBI	CTAG	2 cut(s)	749, 810
GlaI	GCGC	1 cut(s)	233
GsaI	CCCAGC	1 cut(s)	128
HaeIII	GGCC	9 cut(s)	30, 60, 66, 71, 117, 123, 149, 314, 552
HapII	CCGG	7 cut(s)	114, 150, 194, 215, 226, 288, 509
HgaI	GACGC	2 cut(s)	344, 358
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	657, 740
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	618
HpaII	CCGG	7 cut(s)	114, 150, 194, 215, 226, 288, 509
HphI	GGTGA	5 cut(s)	126, 364, 481, 611, 641
Hpy166II	GTNNAC	3 cut(s)	547, 713, 794
Hpy188I	TCNGA	5 cut(s)	203, 256, 276, 526, 614
Hpy188III	TCNNGA	5 cut(s)	194, 319, 325, 391, 509
Hpy8I	GTNNAC	3 cut(s)	547, 713, 794
Hpy99I	CGWCG	4 cut(s)	86, 158, 182, 338
HpyCH4III	ACNGT	3 cut(s)	245, 469, 645
HpyCH4IV	ACGT	2 cut(s)	383, 479
HpyCH4V	TGCA	4 cut(s)	502, 668, 713, 734
HpyF10VI	GCNNNNNNNGC	7 cut(s)	51, 57, 63, 77, 83, 86, 731
HpyF3I	CTNAG	2 cut(s)	144, 705
HpySE526I	ACGT	2 cut(s)	383, 479
Hsp92II	CATG	2 cut(s)	657, 740
HspAI	GCGC	1 cut(s)	232
Kpn2I	TCCGGA	2 cut(s)	193, 508
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
KspI	CCGCGG	2 cut(s)	378, 495
Kzo9I	GATC	2 cut(s)	321, 784
LmnI	GCTCC	2 cut(s)	105, 496
Lsp1109I	GCAGC	8 cut(s)	66, 101, 281, 325, 353, 472, 486, 514
LweI	GCATC	3 cut(s)	54, 157, 592
MaeI	CTAG	2 cut(s)	749, 810
MaeII	ACGT	2 cut(s)	383, 479
MaeIII	GTNAC	2 cut(s)	217, 370
MalI	GATC	2 cut(s)	323, 786
MboI	GATC	2 cut(s)	321, 784
MboII	GAAGA	2 cut(s)	510, 539
MfeI	CAATTG	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	715
MluCI	AATT	2 cut(s)	764, 775
MmeI	TCCRAC	2 cut(s)	181, 379
MroI	TCCGGA	2 cut(s)	193, 508
MroNI	GCCGGC	1 cut(s)	149
MseI	TTAA	1 cut(s)	561
MspA1I	CMGCKG	4 cut(s)	57, 377, 463, 494
MspI	CCGG	7 cut(s)	114, 150, 194, 215, 226, 288, 509
MspR9I	CCNGG	4 cut(s)	62, 68, 120, 289
MunI	CAATTG	1 cut(s)	775
MvaI	CCWGG	3 cut(s)	62, 68, 120
MvnI	CGCG	3 cut(s)	354, 377, 494
MwoI	GCNNNNNNNGC	7 cut(s)	51, 57, 63, 77, 83, 86, 731
NaeI	GCCGGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	321, 784
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	657, 740
NlaIV	GGNNCC	2 cut(s)	213, 313
NmuCI	GTSAC	2 cut(s)	217, 370
NspI	RCATGY	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	618
PflFI	GACNNNGTC	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	3 cut(s)	60, 66, 118
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	3 cut(s)	60, 66, 118
PspN4I	GGNNCC	2 cut(s)	213, 313
PspPI	GGNCC	8 cut(s)	28, 64, 70, 116, 122, 312, 445, 728
PspPPI	RGGWCCY	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	504
PstNI	CAGNNNCTG	1 cut(s)	143
PsyI	GACNNNGTC	1 cut(s)	481
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	2 cut(s)	349, 773
RsaNI	GTAC	2 cut(s)	348, 772
SacII	CCGCGG	2 cut(s)	378, 495
SaqAI	TTAA	1 cut(s)	561
Sau3AI	GATC	2 cut(s)	321, 784
Sau96I	GGNCC	8 cut(s)	28, 64, 70, 116, 122, 312, 445, 728
ScrFI	CCNGG	4 cut(s)	62, 68, 120, 289
SduI	GDGCHC	1 cut(s)	715
SfaNI	GCATC	3 cut(s)	54, 157, 592
SfcI	CTRYAG	1 cut(s)	500
Sfr303I	CCGCGG	2 cut(s)	378, 495
SgrBI	CCGCGG	2 cut(s)	378, 495
SinI	GGWCC	2 cut(s)	445, 728
Sse9I	AATT	2 cut(s)	764, 775
SspMI	CTAG	2 cut(s)	749, 810
StyD4I	CCNGG	4 cut(s)	60, 66, 118, 287
TaaI	ACNGT	3 cut(s)	245, 469, 645
TaiI	ACGT	2 cut(s)	386, 482
TaqI	TCGA	1 cut(s)	787
TasI	AATT	2 cut(s)	764, 775
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	6 cut(s)	54, 60, 80, 89, 380, 494
TfiI	GAWTC	1 cut(s)	618
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	2 cut(s)	169, 628
TseFI	GTSAC	2 cut(s)	217, 370
TseI	GCWGC	8 cut(s)	54, 89, 269, 338, 366, 460, 499, 502
Tsp45I	GTSAC	2 cut(s)	217, 370
TspDTI	ATGAA	1 cut(s)	756
TspRI	CASTG	2 cut(s)	169, 628
Tth111I	GACNNNGTC	1 cut(s)	481
VneI	GTGCAC	1 cut(s)	711
VpaK11BI	GGWCC	2 cut(s)	445, 728
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	764
XceI	RCATGY	1 cut(s)	657
XspI	CTAG	2 cut(s)	749, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.