Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Forward (+)

50370337 .. 50372181

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0329400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGATTTCTTGTCTAGTATACTGTTGTGTTTGTGCTTTATCTCCTGGTTGTTAATCCAAGCCCTCCATAGAAGAACCAGAGTTAGGCTTCCACCAGGACCAAAGCCATTTCCATTGATTGGAAATCTCTTTGAGCTTGGAGACAAACCTCATATCTCTTTGACCAAGCTTTCAAAACAGTATGGCCCCATAATGTCTTTGAAACTAGGCCAGATAACAACTGTAGTAGTTTCTTCATCAACCATGGCCAAAGAAATCCTCCGAACCAATGACCAACTCTTTTGCAACCGAACAATCCCAGATGCGCTGCGAGACATTGGAGAGTACAGCTTGCCTTGGATACCTGTATCAACAAGGTGGAGAAATCTTCGAAAAGTATGCACCTCCCACCTCTTCAACACCGAAGTACTTGATGCCAACCAAGAAAACCGGCGAGTGAAAGTGCAAGAGCTCATAGCTAGCGTCAACGACAGCATGGTAAAGGGTTTGGCAGTAGATATTGGAAAGGCTGCTTTCAAAACTACACTCAATTTGCTGTCGACAACTATTTTCTCGATGGATTTGGCTGATGACACGAGTAGTGGTAGTGAGATGACTAGAGAATTCAAGAAGATTGTTAATGGTGTCATGGAAGAGGCTGGGAAGCCGAATTTGGGGGACTATTTTCCAGTGCTTAGGAAGATTGATCCCCAAGGCATAAGGCGGCGCTTTATGAATTACTTCAACAAGATGTTAGGCTTGATTGAATCAGTGATCAGTCAAAGGTTGGAATGTAGAAAAGGGGATGATTATGTAACAAGTAATGATATGTTGGATACTCTTATAAACCTCGGTGAAGAGAAAAATGAGGTGGATTTGAAGAACTCCGAAGTTGTTGAACATTTGTTTGTGGCTCTATTCGTTGCGGGGACAGATACAACTTCAGCCACATTGGAATGGGCAATGGCGGAGCTACTACACAACCCAGAGAGTCTTTCTAAAGCTCAAGAAGAGCTAGATCAAATGGTTGGAAAAGGAAAACCAATTGAGGAATCCGACATTGCCAGACTCCCTTACTTACAAACAATAATCATGGAAACCTTGCGGTTGCACCCAGCGGGTCCATTGCTACTGCCACGAAAAGCTGAAACAGATGTAGAAATCGGGGGCTACATTGTCCCGAAGGGTGCACAAGTTCTAGTTAATGTTTGGGCCATAGGCCGAGACGCCGACATTTGGGACAAAACTCTTTTATGCCAGAGAGGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

416

Amino Acids

46.69

Weight (kDa)

6.15

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 408	6.2e-76	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccI	GTMKAC	2 cut(s)	19, 539
AciI	CCGC	5 cut(s)	703, 905, 947, 1084, 1097
AclWI	GGATC	1 cut(s)	680
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	602, 649
AcuI	CTGAAG	1 cut(s)	906
AcyI	GRCGYC	1 cut(s)	1206
AfaI	GTAC	2 cut(s)	326, 408
AfiI	CCNNNNNNNGG	4 cut(s)	84, 119, 653, 1215
AgsI	TTSAA	9 cut(s)	174, 202, 397, 517, 607, 724, 746, 859, 878
AjnI	CCWGG	2 cut(s)	44, 94
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AluBI	AGCT	9 cut(s)	136, 169, 330, 451, 458, 952, 983, 994, 1124
AluI	AGCT	9 cut(s)	136, 169, 330, 451, 458, 952, 983, 994, 1124
Alw21I	GWGCWC	2 cut(s)	453, 1171
Alw26I	GTCTC	3 cut(s)	135, 306, 1197
Alw44I	GTGCAC	1 cut(s)	1167
AlwI	GGATC	1 cut(s)	680
AoxI	GGCC	5 cut(s)	184, 208, 246, 1191, 1198
ApaLI	GTGCAC	1 cut(s)	1167
ApeKI	GCWGC	2 cut(s)	307, 509
ApoI	RAATTY	2 cut(s)	602, 649
Asp700I	GAANNNNTTC	1 cut(s)	719
AspLEI	GCGC	2 cut(s)	307, 708
AspS9I	GGNCC	4 cut(s)	98, 185, 1100, 1191
AsuHPI	GGTGA	1 cut(s)	845
AsuII	TTCGAA	1 cut(s)	370
AsuNHI	GCTAGC	1 cut(s)	458
AvaII	GGWCC	2 cut(s)	98, 1100
BaeGI	GKGCMC	1 cut(s)	1171
BalI	TGGCCA	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	574
Bbv12I	GWGCWC	2 cut(s)	453, 1171
BbvI	GCAGC	2 cut(s)	294, 496
BccI	CCATC	1 cut(s)	550
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BciT130I	CCWGG	2 cut(s)	46, 96
BciVI	GTATCC	2 cut(s)	333, 808
BclI	TGATCA	1 cut(s)	753
BcoDI	GTCTC	3 cut(s)	135, 306, 1197
BfaI	CTAG	6 cut(s)	15, 206, 459, 597, 995, 1178
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	709
BfuI	GTATCC	2 cut(s)	333, 808
BisI	GCNGC	3 cut(s)	308, 510, 704
BlsI	GCNGC	3 cut(s)	309, 511, 705
BmcAI	AGTACT	1 cut(s)	408
Bme1390I	CCNGG	2 cut(s)	46, 96
Bme18I	GGWCC	2 cut(s)	98, 1100
BmgT120I	GGNCC	4 cut(s)	98, 185, 1100, 1191
BmiI	GGNNCC	2 cut(s)	187, 1101
BmrFI	CCNGG	2 cut(s)	46, 96
BmsI	GCATC	2 cut(s)	292, 403
BmtI	GCTAGC	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	674
Bpu14I	TTCGAA	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	969
BsaHI	GRCGYC	1 cut(s)	1206
BsaJI	CCNNGG	4 cut(s)	243, 335, 691, 829
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 119, 653, 1215
Bse118I	RCCGGY	1 cut(s)	429
Bse1I	ACTGG	1 cut(s)	668
Bse3DI	GCAATG	3 cut(s)	948, 1038, 1103
BseBI	CCWGG	2 cut(s)	46, 96
BseDI	CCNNGG	4 cut(s)	243, 335, 691, 829
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	4 cut(s)	84, 119, 653, 1215
BseMI	GCAATG	3 cut(s)	948, 1038, 1103
BseNI	ACTGG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	1171
BseXI	GCAGC	2 cut(s)	294, 496
BseYI	CCCAGC	2 cut(s)	638, 1093
BshFI	GGCC	5 cut(s)	186, 210, 248, 1193, 1200
BsiHKAI	GWGCWC	2 cut(s)	453, 1171
BsiSI	CCGG	1 cut(s)	430
BslFI	GGGAC	4 cut(s)	671, 922, 1142, 1232
BslI	CCNNNNNNNGG	4 cut(s)	84, 119, 653, 1215
BsmAI	GTCTC	3 cut(s)	135, 306, 1197
BsmBI	CGTCTC	1 cut(s)	1197
BsmFI	GGGAC	4 cut(s)	671, 922, 1142, 1232
BsnI	GGCC	5 cut(s)	186, 210, 248, 1193, 1200
Bsp119I	TTCGAA	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	453, 1171
Bsp143I	GATC	3 cut(s)	685, 753, 997
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	5 cut(s)	703, 905, 947, 1084, 1097
BspANI	GGCC	5 cut(s)	186, 210, 248, 1193, 1200
BspLI	GGNNCC	2 cut(s)	187, 1101
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	680
BspQI	GCTCTTC	1 cut(s)	984
BspT104I	TTCGAA	1 cut(s)	370
BsrDI	GCAATG	3 cut(s)	948, 1038, 1103
BsrFI	RCCGGY	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	668
BssAI	RCCGGY	1 cut(s)	429
BssECI	CCNNGG	4 cut(s)	243, 335, 691, 829
BssMI	GATC	3 cut(s)	685, 753, 997
BssNAI	GTATAC	1 cut(s)	20
BssNI	GRCGYC	1 cut(s)	1206
BssSI	CACGAG	1 cut(s)	574
BssT1I	CCWWGG	3 cut(s)	243, 335, 691
Bst1107I	GTATAC	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	46, 96
Bst4CI	ACNGT	3 cut(s)	24, 180, 223
Bst6I	CTCTTC	4 cut(s)	398, 627, 831, 984
BstACI	GRCGYC	1 cut(s)	1206
BstBI	TTCGAA	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	332, 460
BstDEI	CTNAG	2 cut(s)	674, 1248
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	790
BstH2I	RGCGCY	1 cut(s)	709
BstHHI	GCGC	2 cut(s)	307, 708
BstKTI	GATC	3 cut(s)	688, 756, 1000
BstMAI	GTCTC	3 cut(s)	135, 306, 1197
BstMBI	GATC	3 cut(s)	685, 753, 997
BstNI	CCWGG	2 cut(s)	46, 96
BstSCI	CCNGG	2 cut(s)	44, 94
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	1171
BstV1I	GCAGC	2 cut(s)	294, 496
BstZ17I	GTATAC	1 cut(s)	20
BsuI	GTATCC	2 cut(s)	333, 808
BsuRI	GGCC	5 cut(s)	186, 210, 248, 1193, 1200
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	790
BtsIMutI	CAGTG	2 cut(s)	675, 756
Cac8I	GCNNGC	2 cut(s)	332, 460
CfoI	GCGC	2 cut(s)	307, 708
Cfr10I	RCCGGY	1 cut(s)	429
Cfr13I	GGNCC	4 cut(s)	98, 185, 1100, 1191
CseI	GACGC	2 cut(s)	451, 1214
Csp6I	GTAC	2 cut(s)	325, 407
CviAII	CATG	4 cut(s)	244, 475, 628, 1072
CviQI	GTAC	2 cut(s)	325, 407
DdeI	CTNAG	2 cut(s)	674, 1248
DpnI	GATC	3 cut(s)	687, 755, 999
DpnII	GATC	3 cut(s)	685, 753, 997
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	4 cut(s)	398, 627, 831, 984
EarI	CTCTTC	4 cut(s)	398, 627, 831, 984
EciI	GGCGGA	1 cut(s)	962
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	3 cut(s)	243, 335, 691
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	98, 1100
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	906
EcoICRI	GAGCTC	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	44, 94
EcoT14I	CCWWGG	3 cut(s)	243, 335, 691
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	3 cut(s)	243, 335, 691
Esp3I	CGTCTC	1 cut(s)	1197
FaeI	CATG	4 cut(s)	247, 478, 631, 1075
FaqI	GGGAC	4 cut(s)	671, 922, 1142, 1232
FatI	CATG	4 cut(s)	243, 474, 627, 1071
FauI	CCCGC	2 cut(s)	898, 1090
FbaI	TGATCA	1 cut(s)	753
FblI	GTMKAC	2 cut(s)	19, 539
Fnu4HI	GCNGC	3 cut(s)	308, 510, 704
FokI	GGATG	1 cut(s)	797
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	3 cut(s)	308, 510, 704
FspBI	CTAG	6 cut(s)	15, 206, 459, 597, 995, 1178
GlaI	GCGC	2 cut(s)	306, 707
GluI	GCNGC	3 cut(s)	308, 510, 704
GsaI	CCCAGC	2 cut(s)	642, 1097
HaeII	RGCGCY	1 cut(s)	709
HaeIII	GGCC	5 cut(s)	186, 210, 248, 1193, 1200
HapII	CCGG	1 cut(s)	430
HgaI	GACGC	2 cut(s)	451, 1214
HhaI	GCGC	2 cut(s)	307, 708
Hin1I	GRCGYC	1 cut(s)	1206
Hin1II	CATG	4 cut(s)	247, 478, 631, 1075
Hin6I	GCGC	2 cut(s)	305, 706
HinP1I	GCGC	2 cut(s)	305, 706
HincII	GTYRAC	2 cut(s)	466, 540
HindII	GTYRAC	2 cut(s)	466, 540
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	4 cut(s)	746, 970, 1031, 1047
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	4 cut(s)	20, 466, 540, 1169
Hpy188I	TCNGA	3 cut(s)	263, 868, 1036
Hpy188III	TCNNGA	4 cut(s)	553, 607, 986, 1159
Hpy8I	GTNNAC	4 cut(s)	20, 466, 540, 1169
HpyAV	CCTTC	1 cut(s)	1156
HpyCH4III	ACNGT	3 cut(s)	24, 180, 223
HpyCH4V	TGCA	5 cut(s)	285, 381, 445, 1090, 1169
HpyF3I	CTNAG	2 cut(s)	674, 1248
Hsp92I	GRCGYC	1 cut(s)	1206
Hsp92II	CATG	4 cut(s)	247, 478, 631, 1075
HspAI	GCGC	2 cut(s)	305, 706
Ksp22I	TGATCA	1 cut(s)	753
Kzo9I	GATC	3 cut(s)	685, 753, 997
LguI	GCTCTTC	1 cut(s)	984
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	2 cut(s)	294, 496
LweI	GCATC	2 cut(s)	292, 403
MaeI	CTAG	6 cut(s)	15, 206, 459, 597, 995, 1178
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	3 cut(s)	687, 755, 999
MboI	GATC	3 cut(s)	685, 753, 997
MfeI	CAATTG	1 cut(s)	1023
MhlI	GDGCHC	2 cut(s)	453, 1171
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	5 cut(s)	529, 602, 649, 715, 1023
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	2 cut(s)	979, 1041
MmeI	TCCRAC	4 cut(s)	747, 792, 988, 1059
Mox20I	TGGCCA	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	3 cut(s)	53, 618, 1182
MslI	CAYNNNNRTG	1 cut(s)	934
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	1097
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	2 cut(s)	46, 96
MunI	CAATTG	1 cut(s)	1023
MvaI	CCWGG	2 cut(s)	46, 96
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	3 cut(s)	685, 753, 997
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	4 cut(s)	247, 478, 631, 1075
NlaIV	GGNNCC	2 cut(s)	187, 1101
NmeAIII	GCCGAG	1 cut(s)	1226
NspV	TTCGAA	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	984
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	746, 1031
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	309, 511, 705
PleI	GAGTC	2 cut(s)	978, 1041
PpsI	GAGTC	2 cut(s)	978, 1041
PsiI	TTATAA	1 cut(s)	824
Psp124BI	GAGCTC	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	44, 94
PspFI	CCCAGC	2 cut(s)	638, 1093
PspGI	CCWGG	2 cut(s)	44, 94
PspN4I	GGNNCC	2 cut(s)	187, 1101
PspPI	GGNCC	4 cut(s)	98, 185, 1100, 1191
RsaI	GTAC	2 cut(s)	326, 408
RsaNI	GTAC	2 cut(s)	325, 407
RseI	CAYNNNNRTG	1 cut(s)	934
SacI	GAGCTC	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	538
SapI	GCTCTTC	1 cut(s)	984
SaqAI	TTAA	3 cut(s)	53, 618, 1182
SatI	GCNGC	3 cut(s)	308, 510, 704
Sau3AI	GATC	3 cut(s)	685, 753, 997
Sau96I	GGNCC	4 cut(s)	98, 185, 1100, 1191
ScaI	AGTACT	1 cut(s)	408
SchI	GAGTC	2 cut(s)	979, 1041
ScrFI	CCNGG	2 cut(s)	46, 96
SduI	GDGCHC	2 cut(s)	453, 1171
SfaNI	GCATC	2 cut(s)	292, 403
SfcI	CTRYAG	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	370
SinI	GGWCC	2 cut(s)	98, 1100
SmiMI	CAYNNNNRTG	1 cut(s)	934
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
Sse9I	AATT	5 cut(s)	529, 602, 649, 715, 1023
SsiI	CCGC	5 cut(s)	703, 905, 947, 1084, 1097
SspMI	CTAG	6 cut(s)	15, 206, 459, 597, 995, 1178
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	44, 94
StyI	CCWWGG	3 cut(s)	243, 335, 691
TaaI	ACNGT	3 cut(s)	24, 180, 223
TaqI	TCGA	3 cut(s)	370, 539, 554
TasI	AATT	5 cut(s)	529, 602, 649, 715, 1023
TatI	WGTACW	2 cut(s)	324, 406
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	2 cut(s)	746, 1031
Tru1I	TTAA	3 cut(s)	53, 618, 1182
Tru9I	TTAA	3 cut(s)	53, 618, 1182
TscAI	CASTG	2 cut(s)	675, 756
TseI	GCWGC	2 cut(s)	307, 509
TspDTI	ATGAA	2 cut(s)	225, 728
TspRI	CASTG	2 cut(s)	675, 756
Van91I	CCANNNNNTGG	1 cut(s)	119
VneI	GTGCAC	1 cut(s)	1167
VpaK11BI	GGWCC	2 cut(s)	98, 1100
XapI	RAATTY	2 cut(s)	602, 649
XmiI	GTMKAC	2 cut(s)	19, 539
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	6 cut(s)	15, 206, 459, 597, 995, 1178
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.