Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012644

Physical Location & Seq

Genomic Coordinates Reverse (-)

2369711 .. 2382418

Gene Structure 12708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1033100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCCTTCGTGTTTCCGACGACGGCGGAAGCACGACAGAGATTTTCCACGTTCTTGGAGTCTATGAAAATGGAGCATGCAGAAGAACCCTCAAAGTTTGATGGGTATCTTGGAGGGGAAGTGGATTCTGAGTGTGGAGTGGCAGGGTGGTTGTGGCGAAGGAAGATTAGGATTTACGACGGAGCTCTGGCCATGAACTATCAGCTCTGCGGTCCCGCTGTTGGAGATATACGGTCGAGATGCTTGAGATTGGCTGATAAGAGCACTTTCGAGGCGGTGGCCGTCCATAGATTGCTTGGCCACCGGTTACCGCTGGATTCGCGGCTGGCCAAATCCGAATGGTATGATATTGTGGAAGGAGAACATTCTCTATGGATGGGAGTATCGAAATTCGAAACCATTCAGGGAAACCATTCGAGTTTTTATGGCTTATTTTCAGAATCAAATTGGGTCTTCCTTGCTGCAAACCCAGTTTTCCTGGATCAGTTACGTAATGTGGACTGTGTGGTTTATGCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0052

Protein Analysis

174

Amino Acids

19.69

Weight (kDa)

5.73

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52500
malus_domestica	MD05G1302500.v1.1 MD16G1033100.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259491 RchiOBHm_Chr6g0290121
rosa_laevigata	RLG00000014201 RLG00000015278
rosa_multiflora	Rmu_sc0005711.1_g000010
rosa_roxburghii	Rroxscaffold_7G00177350
rosa_rugosa	Rorug06G0209700 Rorug06G0209900
rosa_samantha	Rh1CG249200 Rh5BG077800 Rh6AG320300 Rh6BG327600 Rh6CG094100 Rh6CG333700
rosa_wichuraiana	Rw6G027640 Rw6G027670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	322
AciI	CCGC	6 cut(s)	26, 210, 216, 275, 311, 322
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	4 cut(s)	189, 279, 298, 327
AcsI	RAATTY	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgeI	ACCGGT	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	2 cut(s)	185, 205
AluI	AGCT	2 cut(s)	185, 205
Alw21I	GWGCWC	2 cut(s)	187, 266
AlwI	GGATC	1 cut(s)	489
AoxI	GGCC	4 cut(s)	189, 279, 298, 327
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	389
AsiGI	ACCGGT	1 cut(s)	303
Asp700I	GAANNNNTTC	2 cut(s)	399, 412
AspS9I	GGNCC	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	212
BalI	TGGCCA	3 cut(s)	191, 300, 329
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	2 cut(s)	187, 266
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	2 cut(s)	95, 370
BceAI	ACGGC	2 cut(s)	39, 266
BciT130I	CCWGG	1 cut(s)	479
BisI	GCNGC	2 cut(s)	323, 462
BlsI	GCNGC	2 cut(s)	324, 463
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	479
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	445
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	265
BsaAI	YACGTR	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	470
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	479
BseGI	GGATG	1 cut(s)	381
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	4 cut(s)	191, 281, 300, 329
BshTI	ACCGGT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	187, 266
BsiSI	CCGG	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	4 cut(s)	191, 281, 300, 329
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1286I	GDGCHC	2 cut(s)	187, 266
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	6 cut(s)	26, 210, 216, 275, 311, 322
BspANI	GGCC	4 cut(s)	191, 281, 300, 329
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	489
BspT104I	TTCGAA	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	470
BssAI	RCCGGY	1 cut(s)	303
BssMI	GATC	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	2 cut(s)	234, 503
BstBAI	YACGTR	1 cut(s)	491
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	78, 327
BstDEI	CTNAG	1 cut(s)	129
BstEII	GGTNACC	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	381
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	484
BstMBI	GATC	1 cut(s)	481
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	1 cut(s)	80
BstPI	GGTNACC	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	477
BstSNI	TACGTA	1 cut(s)	491
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	445
BstXI	CCANNNNNNTGG	1 cut(s)	55
BsuRI	GGCC	4 cut(s)	191, 281, 300, 329
BtsCI	GGATG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	78, 327
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	212
CspAI	ACCGGT	1 cut(s)	303
CviAII	CATG	3 cut(s)	77, 193, 517
CviJI	RGCY	9 cut(s)	185, 191, 205, 254, 281, 300, 325, 329, 429
CviKI_1	RGCY	9 cut(s)	185, 191, 205, 254, 281, 300, 325, 329, 429
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
EaeI	YGGCCR	4 cut(s)	189, 279, 298, 327
EciI	GGCGGA	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	185
Eco105I	TACGTA	1 cut(s)	491
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	185
Eco91I	GGTNACC	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	3 cut(s)	80, 196, 520
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	3 cut(s)	76, 192, 516
FauI	CCCGC	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	323, 462
FokI	GGATG	1 cut(s)	388
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	323, 462
GluI	GCNGC	2 cut(s)	323, 462
HaeIII	GGCC	4 cut(s)	191, 281, 300, 329
HapII	CCGG	1 cut(s)	304
Hin1II	CATG	3 cut(s)	80, 196, 520
HinfI	GANTC	4 cut(s)	59, 125, 317, 440
HpaII	CCGG	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	4 cut(s)	18, 130, 337, 439
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	3 cut(s)	22, 25, 182
HpyAV	CCTTC	3 cut(s)	16, 153, 350
HpyCH4III	ACNGT	2 cut(s)	234, 503
HpyCH4IV	ACGT	2 cut(s)	50, 490
HpyCH4V	TGCA	2 cut(s)	80, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	2 cut(s)	50, 490
Hsp92II	CATG	3 cut(s)	80, 196, 520
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	73, 182
LpnPI	CCDG	9 cut(s)	129, 173, 299, 311, 317, 389, 464, 483, 491
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	1 cut(s)	230
MaeII	ACGT	2 cut(s)	50, 490
MaeIII	GTNAC	2 cut(s)	306, 486
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	3 cut(s)	95, 175, 445
MhlI	GDGCHC	2 cut(s)	187, 266
MlsI	TGGCCA	3 cut(s)	191, 300, 329
MluCI	AATT	2 cut(s)	389, 445
MluNI	TGGCCA	3 cut(s)	191, 300, 329
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	41, 202
MnlI	CCTC	3 cut(s)	100, 107, 265
Mox20I	TGGCCA	3 cut(s)	191, 300, 329
MroXI	GAANNNNTTC	2 cut(s)	399, 412
MscI	TGGCCA	3 cut(s)	191, 300, 329
Msp20I	TGGCCA	3 cut(s)	191, 300, 329
MspA1I	CMGCKG	2 cut(s)	218, 313
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	319
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	3 cut(s)	80, 196, 520
NlaIV	GGNNCC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	393
PaeI	GCATGC	1 cut(s)	80
PdmI	GAANNNNTTC	2 cut(s)	399, 412
PfeI	GAWTC	3 cut(s)	125, 317, 440
PfoI	TCCNGGA	1 cut(s)	477
PinAI	ACCGGT	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	324, 463
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Ppu21I	YACGTR	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	477
PspEI	GGTNACC	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	212
SacI	GAGCTC	1 cut(s)	187
SatI	GCNGC	2 cut(s)	323, 462
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	2 cut(s)	187, 266
SetI	ASST	4 cut(s)	53, 187, 207, 493
SfaNI	GCATC	1 cut(s)	230
SfuI	TTCGAA	1 cut(s)	393
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
SnaBI	TACGTA	1 cut(s)	491
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	2 cut(s)	389, 445
SsiI	CCGC	6 cut(s)	26, 210, 216, 275, 311, 322
SstI	GAGCTC	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	234, 503
TaiI	ACGT	2 cut(s)	53, 493
TaqI	TCGA	5 cut(s)	236, 270, 386, 393, 416
TasI	AATT	2 cut(s)	389, 445
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	3 cut(s)	125, 317, 440
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	80, 209
TspGWI	ACGGA	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
XmnI	GAANNNNTTC	2 cut(s)	399, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.