Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005711.1

Orthogroup ID

OG0012644

Physical Location & Seq

Genomic Coordinates Forward (+)

68025 .. 68625

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005711.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ctggatctcctcccaaacccgaccttcatctcactcgaactcgccgtcattattaccctccttccttccttcatctacgtcctcagcttcttctgcatcgactccgtccagtccgtcttcaactcccgttgctgccctccccctaccaaacccatacagcgccgttccgtcttagcctctggaatcgaagcaagagagcggcggccagtcggcgcgactcacttcaaagaacgactccgttgtgggattcgaaggatttgcctgtcgaaggattctaggagtcgccggtcggagatgaaaggtgtttattatggattaggtggtccggccgtcggagatacacagtccagatgcttgagattggccggtaaaagtccctccgaggcggtcgtcgtccggcaattgcttggtcatcgcttaccacttgatgcacggcaagccaaatctgaatggtcatcgcttaccacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0052

Protein Analysis

156

Amino Acids

17.34

Weight (kDa)

10.13

Isoelectric Point (pI)

70.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52500
malus_domestica	MD05G1302500.v1.1 MD16G1033100.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259491 RchiOBHm_Chr6g0290121
rosa_laevigata	RLG00000014201 RLG00000015278
rosa_multiflora	Rmu_sc0005711.1_g000010
rosa_roxburghii	Rroxscaffold_7G00177350
rosa_rugosa	Rorug06G0209700 Rorug06G0209900
rosa_samantha	Rh1CG249200 Rh5BG077800 Rh6AG320300 Rh6BG327600 Rh6CG094100 Rh6CG333700
rosa_wichuraiana	Rw6G027640 Rw6G027670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	199
AccII	CGCG	1 cut(s)	215
AciI	CCGC	3 cut(s)	199, 202, 386
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	3 cut(s)	203, 327, 363
AfiI	CCNNNNNNNGG	2 cut(s)	268, 332
AgsI	TTSAA	2 cut(s)	121, 226
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	3 cut(s)	203, 327, 363
ApeKI	GCWGC	1 cut(s)	132
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspLEI	GCGC	2 cut(s)	162, 215
AspS9I	GGNCC	1 cut(s)	323
AsuII	TTCGAA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	119
BceAI	ACGGC	4 cut(s)	29, 147, 314, 449
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BfaI	CTAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	163
BisI	GCNGC	3 cut(s)	133, 200, 203
BlsI	GCNGC	3 cut(s)	134, 201, 204
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmsI	GCATC	3 cut(s)	105, 341, 418
BpiI	GAAGAC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	83
Bpu14I	TTCGAA	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 332
Bse118I	RCCGGY	2 cut(s)	285, 365
Bse1I	ACTGG	2 cut(s)	109, 206
BseDI	CCNNGG	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	268, 332
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	2 cut(s)	109, 206
BseX3I	CGGCCG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	215
Bsh1285I	CGRYCG	3 cut(s)	290, 330, 390
BshFI	GGCC	3 cut(s)	205, 329, 365
BsiEI	CGRYCG	3 cut(s)	290, 330, 390
BsiSI	CCGG	4 cut(s)	286, 326, 366, 397
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	268, 332
BsmFI	GGGAC	1 cut(s)	360
BsnI	GGCC	3 cut(s)	205, 329, 365
Bsp119I	TTCGAA	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	3 cut(s)	199, 202, 386
BspANI	GGCC	3 cut(s)	205, 329, 365
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	215
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	199
BsrFI	RCCGGY	2 cut(s)	285, 365
BsrI	ACTGG	2 cut(s)	109, 206
BssAI	RCCGGY	2 cut(s)	285, 365
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	83, 172
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	215
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	162, 215
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMCI	CGRYCG	3 cut(s)	290, 330, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 437
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	205, 329, 365
BtgZI	GCGATG	2 cut(s)	398, 441
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	2 cut(s)	162, 215
Cfr10I	RCCGGY	2 cut(s)	285, 365
Cfr13I	GGNCC	1 cut(s)	323
CviJI	RGCY	6 cut(s)	87, 176, 205, 329, 365, 440
CviKI_1	RGCY	6 cut(s)	87, 176, 205, 329, 365, 440
DdeI	CTNAG	2 cut(s)	83, 172
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	3 cut(s)	203, 327, 363
EagI	CGGCCG	1 cut(s)	327
EclXI	CGGCCG	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	323
Eco52I	CGGCCG	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	266
FaiI	YATR	2 cut(s)	155, 312
FaqI	GGGAC	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	133, 200, 203
Fsp4HI	GCNGC	3 cut(s)	133, 200, 203
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	2 cut(s)	161, 214
GluI	GCNGC	3 cut(s)	133, 200, 203
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	3 cut(s)	205, 329, 365
HapII	CCGG	4 cut(s)	286, 326, 366, 397
HhaI	GCGC	2 cut(s)	162, 215
Hin6I	GCGC	2 cut(s)	160, 213
HinP1I	GCGC	2 cut(s)	160, 213
HinfI	GANTC	7 cut(s)	101, 183, 217, 234, 247, 272, 280
HpaII	CCGG	4 cut(s)	286, 326, 366, 397
Hpy188I	TCNGA	4 cut(s)	292, 335, 382, 448
Hpy188III	TCNNGA	2 cut(s)	180, 348
Hpy99I	CGWCG	2 cut(s)	335, 395
HpyAV	CCTTC	6 cut(s)	34, 71, 75, 79, 246, 262
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	96, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 437
HpyF3I	CTNAG	2 cut(s)	83, 172
HpySE526I	ACGT	1 cut(s)	78
HspAI	GCGC	2 cut(s)	160, 213
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	122, 165, 219, 275, 299, 339, 361, 379, 410
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	3 cut(s)	105, 341, 418
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	78
MalI	GATC	1 cut(s)	6
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	82, 109
MfeI	CAATTG	1 cut(s)	401
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	401
MlyI	GAGTC	4 cut(s)	95, 211, 228, 289
MmeI	TCCRAC	2 cut(s)	270, 313
MnlI	CCTC	7 cut(s)	20, 68, 92, 147, 187, 376, 388
MspI	CCGG	4 cut(s)	286, 326, 366, 397
MunI	CAATTG	1 cut(s)	401
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	93, 437
NdeII	GATC	1 cut(s)	4
NspV	TTCGAA	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	183, 247, 272
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	134, 201, 204
PleI	GAGTC	4 cut(s)	95, 211, 228, 288
PpsI	GAGTC	4 cut(s)	95, 211, 228, 288
PspPI	GGNCC	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	104
SatI	GCNGC	3 cut(s)	133, 200, 203
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	4 cut(s)	95, 211, 228, 289
SetI	ASST	5 cut(s)	26, 81, 89, 304, 322
SfaNI	GCATC	3 cut(s)	105, 341, 418
SfuI	TTCGAA	1 cut(s)	250
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	1 cut(s)	401
SsiI	CCGC	3 cut(s)	199, 202, 386
SspMI	CTAG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	5 cut(s)	36, 99, 186, 250, 266
TasI	AATT	1 cut(s)	401
TauI	GCSGC	2 cut(s)	202, 205
TfiI	GAWTC	3 cut(s)	183, 247, 272
TseI	GCWGC	1 cut(s)	132
TspDTI	ATGAA	3 cut(s)	16, 61, 311
TspGWI	ACGGA	4 cut(s)	94, 103, 157, 227
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	323
XagI	CCTNNNNNAGG	1 cut(s)	266
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.