Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012644

Physical Location & Seq

Genomic Coordinates Reverse (-)

52025421 .. 52030822

Gene Structure 5402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG320300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTGGAACGAATCCTTGAATTATTCCCAACGGCCATCCACGACGTTGACTCAAAGGAAAAGAATATTGTCTTGTTGGCGGTGGAGAACAAGCAAACCAATCTGTACCAACTGTTACGAAACAGCGGTCGTCTGATGAAAGATAGGGAGTTCGGTAAAGTGGATATTGATTGGAATAGTGCGTTACATCTCGCAGCGAGGGGTCCTCTCCTTGAAGCCTTCTCTCCCAATTTCCCTGCACCAGATCCCATTCCATGTCGACCCTCCGCTCCCATTGCCGCAGCCTCCTCCTCCTCCTCCACTCCCAACCCTATCCCCGCCGCCCAGCCTTCCCTCCTCATCTCCGGCGTCGTCGAGGAGCTCACCACTCGCGTCGCCCAGATTGTCCGCGTCCTCGGTGGTCCGGCCGTCGGAGATACACAGTCCAGATGCTTGAGATTGGCCGAGGCGGTCGCCGTCCTGCAATTGCTTGGTCATCGTTTACCACTTGATGCACGGCAAGCCAAATCTGAATGGGAAGCATTCACTTCTGCATTTTCAAAGGAGCAAGCTAGTGCGCTGGTGTTGCCCGCTGCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0052

Protein Analysis

193

Amino Acids

20.82

Weight (kDa)

6.84

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52500
malus_domestica	MD05G1302500.v1.1 MD16G1033100.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259491 RchiOBHm_Chr6g0290121
rosa_laevigata	RLG00000014201 RLG00000015278
rosa_multiflora	Rmu_sc0005711.1_g000010
rosa_roxburghii	Rroxscaffold_7G00177350
rosa_rugosa	Rorug06G0209700 Rorug06G0209900
rosa_samantha	Rh1CG249200 Rh5BG077800 Rh6AG320300 Rh6BG327600 Rh6CG094100 Rh6CG333700
rosa_wichuraiana	Rw6G027640 Rw6G027670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	259
AccII	CGCG	2 cut(s)	372, 390
AciI	CCGC	9 cut(s)	80, 126, 267, 279, 318, 321, 388, 449, 570
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	3 cut(s)	33, 405, 441
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	20, 215, 540
AluBI	AGCT	2 cut(s)	361, 551
AluI	AGCT	2 cut(s)	361, 551
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	3 cut(s)	33, 405, 441
ApeKI	GCWGC	3 cut(s)	194, 281, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	2 cut(s)	203, 401
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	203, 401
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	206, 293, 559
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	4 cut(s)	48, 392, 440, 512
BfaI	CTAG	1 cut(s)	552
BisI	GCNGC	5 cut(s)	195, 279, 282, 321, 573
BlsI	GCNGC	5 cut(s)	196, 280, 283, 322, 574
Bme18I	GGWCC	2 cut(s)	203, 401
BmgT120I	GGNCC	2 cut(s)	203, 401
BmiI	GGNNCC	1 cut(s)	204
BmsI	GCATC	2 cut(s)	419, 481
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpuEI	CTTGAG	1 cut(s)	454
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	394, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	394, 444
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	273
BseRI	GAGGAG	6 cut(s)	277, 280, 283, 286, 326, 371
BseX3I	CGGCCG	1 cut(s)	405
BseXI	GCAGC	3 cut(s)	206, 293, 559
BseYI	CCCAGC	1 cut(s)	324
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	2 cut(s)	372, 390
Bsh1285I	CGRYCG	3 cut(s)	130, 408, 453
BshFI	GGCC	3 cut(s)	35, 407, 443
BsiEI	CGRYCG	3 cut(s)	130, 408, 453
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	345, 404
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	35, 407, 443
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	9 cut(s)	80, 126, 267, 279, 318, 321, 388, 449, 570
BspANI	GGCC	3 cut(s)	35, 407, 443
BspFNI	CGCG	2 cut(s)	372, 390
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	394, 444
BssMI	GATC	1 cut(s)	244
BssNI	GRCGYC	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	114, 423
BstACI	GRCGYC	1 cut(s)	348
BstC8I	GCNNGC	3 cut(s)	501, 549, 570
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	2 cut(s)	372, 390
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMCI	CGRYCG	3 cut(s)	130, 408, 453
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 500, 565
BstUI	CGCG	2 cut(s)	372, 390
BstV1I	GCAGC	3 cut(s)	206, 293, 559
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BstZI	CGGCCG	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	35, 407, 443
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	501, 549, 570
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	203, 401
CseI	GACGC	3 cut(s)	337, 361, 379
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	9 cut(s)	35, 218, 284, 328, 361, 407, 443, 503, 551
CviKI_1	RGCY	9 cut(s)	35, 218, 284, 328, 361, 407, 443, 503, 551
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EaeI	YGGCCR	3 cut(s)	33, 405, 441
EagI	CGGCCG	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	361
EclXI	CGGCCG	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	203, 401
Eco52I	CGGCCG	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	1 cut(s)	258
FaiI	YATR	1 cut(s)	256
FatI	CATG	1 cut(s)	254
FauI	CCCGC	2 cut(s)	325, 577
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	5 cut(s)	195, 279, 282, 321, 573
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	5 cut(s)	195, 279, 282, 321, 573
FspBI	CTAG	1 cut(s)	552
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	5 cut(s)	195, 279, 282, 321, 573
GsaI	CCCAGC	1 cut(s)	328
HaeIII	GGCC	3 cut(s)	35, 407, 443
HapII	CCGG	2 cut(s)	345, 404
HgaI	GACGC	3 cut(s)	337, 361, 379
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	2 cut(s)	49, 260
HindII	GTYRAC	2 cut(s)	49, 260
HinfI	GANTC	2 cut(s)	12, 50
HpaII	CCGG	2 cut(s)	345, 404
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	3 cut(s)	49, 260, 482
Hpy188I	TCNGA	3 cut(s)	135, 413, 511
Hpy188III	TCNNGA	1 cut(s)	426
Hpy8I	GTNNAC	3 cut(s)	49, 260, 482
Hpy99I	CGWCG	5 cut(s)	47, 353, 356, 377, 413
HpyAV	CCTTC	2 cut(s)	229, 339
HpyCH4III	ACNGT	2 cut(s)	114, 423
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	239, 463, 494, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 500, 565
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	258
HspAI	GCGC	1 cut(s)	557
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	3 cut(s)	274, 358, 544
LpnPI	CCDG	9 cut(s)	249, 255, 338, 358, 392, 417, 439, 473, 545
Lsp1109I	GCAGC	3 cut(s)	206, 293, 559
LweI	GCATC	2 cut(s)	419, 481
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	114, 183
MalI	GATC	1 cut(s)	246
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	1 cut(s)	244
MfeI	CAATTG	1 cut(s)	464
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	3 cut(s)	20, 229, 464
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	391
MspA1I	CMGCKG	2 cut(s)	126, 572
MspI	CCGG	2 cut(s)	345, 404
MunI	CAATTG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	521
MvnI	CGCG	2 cut(s)	372, 390
MwoI	GCNNNNNNNGC	3 cut(s)	275, 500, 565
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	258
NlaIV	GGNNCC	1 cut(s)	204
NmeAIII	GCCGAG	1 cut(s)	469
PctI	GAATGC	1 cut(s)	521
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	5 cut(s)	196, 280, 283, 322, 574
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	203, 401
PspPPI	RGGWCCY	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	363
SalI	GTCGAC	1 cut(s)	258
SatI	GCNGC	5 cut(s)	195, 279, 282, 321, 573
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	203, 401
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	3 cut(s)	48, 363, 553
SfaNI	GCATC	2 cut(s)	419, 481
SinI	GGWCC	2 cut(s)	203, 401
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	3 cut(s)	20, 229, 464
SsiI	CCGC	9 cut(s)	80, 126, 267, 279, 318, 321, 388, 449, 570
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	552
SstI	GAGCTC	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	114, 423
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	259, 354
TasI	AATT	3 cut(s)	20, 229, 464
TauI	GCSGC	2 cut(s)	281, 323
TfiI	GAWTC	1 cut(s)	12
TseI	GCWGC	3 cut(s)	194, 281, 572
TspDTI	ATGAA	1 cut(s)	152
VpaK11BI	GGWCC	2 cut(s)	203, 401
XmiI	GTMKAC	1 cut(s)	259
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.