Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012644

Physical Location & Seq

Genomic Coordinates Reverse (-)

10408859 .. 10410808

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG094100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCCGAGTCGATTCGGTTGCTTCCCCTTTTGGACCAGATTGATCCCTCCGTGCATTCGCTTCGATACCTCTACATTCTGGAAGCATGCGCTTTTAAAGGAGCAAGCTAGTGCGGTGGTGTTGCCCACTGCCAAATTCATCAATTCGTGTGATAAGGAGCAAATTCAATTGGCACCTGAGAAATTCATAAAGTTTCTTGTTTTCTGTTTGTTGTCAAATTGCCATAAAGCTGGATTGTCCATTTTGGATGAAGAAATATTTGAGGGGGGTAATATGTGTTGGACACAAGTGTTTTTGCAAAGCGTTGGAGCTTTTGCAAAACATACGGTTGTAACAGCTCCAATGTCCGTTATTAATGCAATAGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

123

Amino Acids

13.78

Weight (kDa)

8.26

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52500
malus_domestica	MD05G1302500.v1.1 MD16G1033100.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259491 RchiOBHm_Chr6g0290121
rosa_laevigata	RLG00000014201 RLG00000015278
rosa_multiflora	Rmu_sc0005711.1_g000010
rosa_roxburghii	Rroxscaffold_7G00177350
rosa_rugosa	Rorug06G0209700 Rorug06G0209900
rosa_samantha	Rh1CG249200 Rh5BG077800 Rh6AG320300 Rh6BG327600 Rh6CG094100 Rh6CG333700
rosa_wichuraiana	Rw6G027640 Rw6G027670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	134, 162, 182
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	5 cut(s)	107, 230, 311, 338, 365
AluI	AGCT	5 cut(s)	107, 230, 311, 338, 365
AlwI	GGATC	1 cut(s)	37
ApoI	RAATTY	3 cut(s)	134, 162, 182
AseI	ATTAAT	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	172
BcgI	CGANNNNNNTGC	3 cut(s)	34, 43, 77
BfaI	CTAG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	174
BseGI	GGATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	172
BssMI	GATC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	87, 105
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	87, 105
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	33
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	5 cut(s)	107, 230, 311, 338, 365
CviKI_1	RGCY	5 cut(s)	107, 230, 311, 338, 365
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
DraI	TTTAAA	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	33
FaeI	CATG	1 cut(s)	89
FaiI	YATR	5 cut(s)	87, 188, 225, 275, 324
FatI	CATG	1 cut(s)	85
FokI	GGATG	1 cut(s)	260
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	2 cut(s)	7, 12
Hpy188III	TCNNGA	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	4 cut(s)	54, 298, 317, 359
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	4 cut(s)	100, 157, 308, 343
LpnPI	CCDG	4 cut(s)	49, 64, 189, 216
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	263
MfeI	CAATTG	1 cut(s)	167
MluCI	AATT	6 cut(s)	134, 142, 162, 167, 182, 217
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	260, 286
MnlI	CCTC	3 cut(s)	57, 79, 256
MseI	TTAA	2 cut(s)	95, 354
MunI	CAATTG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	54
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	30
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	95, 354
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	16
SetI	ASST	7 cut(s)	71, 109, 178, 232, 313, 340, 367
SinI	GGWCC	1 cut(s)	33
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	6 cut(s)	134, 142, 162, 167, 182, 217
SsiI	CCGC	1 cut(s)	113
SspI	AATATT	1 cut(s)	258
SspMI	CTAG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	10, 63
TasI	AATT	6 cut(s)	134, 142, 162, 167, 182, 217
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	95, 354
Tru9I	TTAA	2 cut(s)	95, 354
TscAI	CASTG	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	127, 175, 264
TspGWI	ACGGA	2 cut(s)	39, 337
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	33
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	3 cut(s)	134, 162, 182
XceI	RCATGY	1 cut(s)	89
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.