Rorug06G0209700

COP9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
33387746 .. 33389145
1400 bp
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UTR
Exon/CDS
Intron
Rorug06G0209700.1

Sequence Viewer

Length: 1272 bp
ATGAAAATGGAAACAAGCAGCAGCAGCAGCTCATTTCCCATTACTAGCAAAGATCTTCCTTGCGATATCATAGAGGAAATTCTGCTGCAGCTGCCAGTCAAGTCGCTGCTCCGTTTCAAATGCGTGAGCAAATCATGGCTTAATCTCATCTCCGACCACAAATTCATCAAGTCACACCTTCACCACTCCACCAAACAACACCCTCACCACGATGATGATGACGGTGATCGAATATCAAACGCACATCTCATGCTCTCCTCAACAACCCTCATTCACTCCCTCCATCTACAGCTACCCAATACTCGTACCAAACAAGAAGAAGAAGCGCCAGCTGCTGCTGCTGCAACTGATGCAGTAGTACTCGAGTCCATGGTGGAGTACCCGGTGGCGTCGACGGTGAGGCGGCCAGCTGTCAAAGACATCAAGATCGTCGGTTCCTGCAACGGCTTGCTATGCTTGGTGCTCGACTCCCAACACATGATCATATACAACCCCTCCACCAGGCACGTTCAAGAAGTCCCCAACCCGGAGGAAACTGTAGTCGGTAGAGATTACTTTTACGGTTTCGGTTATGATTGTCGCAACGACGACTGTAAAATAGTGAGGGCCACTTCTTCAAGTAGGGATGGAAATTTCGTCACCCTACTTGACATCTTTACTTTGAAGACCAACTCTTGGCGGACAAAAACCAAAACACTACCCTTTTATTTCATGTCCAGCGTGGTGGGTACCCTTCTTAATGGGGCTCTCCACTGGGCAGTCCGTCGAGGAATCAACATCAGTCCTTCTGACGGTGATGACCATGACCCGAGGCCTTTCGGGATCGTCTCCTTTGATCTGACGGAGGAGACTTACAAAGAAGTACCCCTGCCGTGTGACGGTGACAAGCATTTCTCTTTCTATGGATTGGGGGTTTTAGGAGGGTGTCTGAGTATGCTCCACAGCCCCCACGGGTCTGATTATCAAGTGTGGATTATGAAGGAATATGGAGTCAAGGCGTCTTGGAGTGTATTCACAACCATCCCACAGAAGATGGAGGATTCTAAGGAGTACATGGGACTGATGTCGCTTTTGTGCATTTTGAAGAACGGCGAAATTCTAATGATGTTGCACAACCACAAAAAGGTTGTGATATACAATCCCGGACAAAGGAAATTTCGAACCATATTCAATGGGGAAATAGGCTCTTCCCAAGTGGCCTTATACCTCGAGACTCTAGTTTCAACAAAAATATATGCACCATCCTCATCACCATGCATCCTAGCTACCTAG

Protein Analysis

423

Amino Acids

47.37

Weight (kDa)

6.55

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 56 1.2e-09 F-box domain
FBA_1 PF07734 138 - 407 7.1e-29 F-box associated beta propeller domain
FBA_3 PF08268 140 - 397 2.8e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 728
AccB1I GGYRCC 1 cut(s) 728
AccB7I CCANNNNNTGG 1 cut(s) 675
AccI GTMKAC 1 cut(s) 392
AciI CCGC 2 cut(s) 403, 679
AclWI GGATC 1 cut(s) 830
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 5 cut(s) 78, 161, 631, 1095, 1154
AcyI GRCGYC 2 cut(s) 389, 998
AfaI GTAC 6 cut(s) 307, 360, 380, 730, 864, 1052
AfiI CCNNNNNNNGG 7 cut(s) 501, 526, 675, 791, 878, 1123, 1149
AgsI TTSAA 7 cut(s) 118, 512, 618, 664, 1084, 1171, 1224
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 6 cut(s) 30, 91, 292, 332, 410, 1265
AluI AGCT 6 cut(s) 30, 91, 292, 332, 410, 1265
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 3 cut(s) 832, 842, 1205
AlwI GGATC 1 cut(s) 830
AlwNI CAGNNNCTG 1 cut(s) 335
Ama87I CYCGRG 3 cut(s) 362, 808, 1208
AoxI GGCC 4 cut(s) 404, 606, 812, 1197
ApoI RAATTY 5 cut(s) 78, 161, 631, 1095, 1154
Asp718I GGTACC 1 cut(s) 728
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 606
AsuC2I CCSGG 3 cut(s) 383, 527, 1143
AsuHPI GGTGA 8 cut(s) 173, 197, 236, 409, 631, 806, 893, 1242
AsuII TTCGAA 1 cut(s) 1159
AvaI CYCGRG 3 cut(s) 362, 808, 1208
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 748
BbsI GAAGAC 1 cut(s) 671
Bbv12I GWGCWC 1 cut(s) 465
BccI CCATC 5 cut(s) 291, 620, 1027, 1028, 1249
BceAI ACGGC 3 cut(s) 460, 856, 1105
BciT130I CCWGG 1 cut(s) 502
BclI TGATCA 1 cut(s) 480
BcnI CCSGG 3 cut(s) 383, 527, 1143
BcoDI GTCTC 3 cut(s) 832, 842, 1205
BfaI CTAG 4 cut(s) 45, 1217, 1262, 1270
BfmI CTRYAG 3 cut(s) 86, 287, 537
BfoI RGCGCY 1 cut(s) 329
BglII AGATCT 1 cut(s) 52
BmcAI AGTACT 1 cut(s) 360
Bme1390I CCNGG 4 cut(s) 383, 502, 527, 1143
BmeT110I CYCGRG 3 cut(s) 362, 808, 1208
BmgT120I GGNCC 1 cut(s) 606
BmiI GGNNCC 2 cut(s) 436, 730
BmrFI CCNGG 4 cut(s) 383, 502, 527, 1143
BmrI ACTGGG 1 cut(s) 763
BmsI GCATC 2 cut(s) 340, 1266
BmuI ACTGGG 1 cut(s) 763
BoxI GACNNNNGTC 1 cut(s) 1063
BpiI GAAGAC 1 cut(s) 671
Bpu14I TTCGAA 1 cut(s) 1159
BpuMI CCSGG 3 cut(s) 383, 527, 1143
BsaHI GRCGYC 2 cut(s) 389, 998
BsaJI CCNNGG 3 cut(s) 369, 809, 949
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 7 cut(s) 501, 526, 675, 791, 878, 1123, 1149
Bse1I ACTGG 2 cut(s) 95, 758
BseBI CCWGG 1 cut(s) 502
BseDI CCNNGG 3 cut(s) 369, 809, 949
BseGI GGATG 4 cut(s) 631, 1020, 1241, 1257
BseLI CCNNNNNNNGG 7 cut(s) 501, 526, 675, 791, 878, 1123, 1149
BseMII CTCAG 1 cut(s) 920
BseNI ACTGG 2 cut(s) 95, 758
BseRI GAGGAG 2 cut(s) 247, 860
BshFI GGCC 4 cut(s) 406, 608, 814, 1199
BshNI GGYRCC 1 cut(s) 728
BsiHKAI GWGCWC 1 cut(s) 465
BsiHKCI CYCGRG 3 cut(s) 362, 808, 1208
BsiSI CCGG 3 cut(s) 383, 527, 1143
BslFI GGGAC 2 cut(s) 503, 1071
BslI CCNNNNNNNGG 7 cut(s) 501, 526, 675, 791, 878, 1123, 1149
BsmAI GTCTC 3 cut(s) 832, 842, 1205
BsmBI CGTCTC 1 cut(s) 832
BsmFI GGGAC 2 cut(s) 503, 1071
BsnI GGCC 4 cut(s) 406, 608, 814, 1199
BsoBI CYCGRG 3 cut(s) 362, 808, 1208
Bsp119I TTCGAA 1 cut(s) 1159
Bsp1286I GDGCHC 2 cut(s) 465, 748
Bsp143I GATC 6 cut(s) 52, 226, 426, 480, 822, 835
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 2 cut(s) 403, 679
BspANI GGCC 4 cut(s) 406, 608, 814, 1199
BspCNI CTCAG 1 cut(s) 921
BspLI GGNNCC 2 cut(s) 436, 730
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 1 cut(s) 830
BspQI GCTCTTC 1 cut(s) 1192
BspT104I TTCGAA 1 cut(s) 1159
BspT107I GGYRCC 1 cut(s) 728
BsrI ACTGG 2 cut(s) 95, 758
BssECI CCNNGG 3 cut(s) 369, 809, 949
BssMI GATC 6 cut(s) 52, 226, 426, 480, 822, 835
BssNI GRCGYC 2 cut(s) 389, 998
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 7 cut(s) 224, 397, 538, 563, 593, 794, 881
Bst6I CTCTTC 1 cut(s) 1192
BstACI GRCGYC 2 cut(s) 389, 998
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 1159
BstC8I GCNNGC 3 cut(s) 330, 408, 449
BstDEI CTNAG 2 cut(s) 929, 1044
BstDSI CCRYGG 2 cut(s) 369, 949
BstENI CCTNNNNNAGG 1 cut(s) 499
BstF5I GGATG 4 cut(s) 631, 1020, 1241, 1257
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 6 cut(s) 55, 229, 429, 483, 825, 838
BstMAI GTCTC 3 cut(s) 832, 842, 1205
BstMBI GATC 6 cut(s) 52, 226, 426, 480, 822, 835
BstMWI GCNNNNNNNGC 8 cut(s) 24, 27, 91, 332, 338, 341, 350, 453
BstNI CCWGG 1 cut(s) 502
BstPAI GACNNNNGTC 1 cut(s) 1063
BstSCI CCNGG 4 cut(s) 381, 500, 525, 1141
BstSFI CTRYAG 3 cut(s) 86, 287, 537
BstV2I GAAGAC 1 cut(s) 671
BstX2I RGATCY 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 724
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 4 cut(s) 406, 608, 814, 1199
BtgI CCRYGG 2 cut(s) 369, 949
BtsCI GGATG 4 cut(s) 631, 1020, 1241, 1257
BtsIMutI CAGTG 1 cut(s) 751
Cac8I GCNNGC 3 cut(s) 330, 408, 449
CaiI CAGNNNCTG 1 cut(s) 335
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 606
CseI GACGC 2 cut(s) 378, 987
Csp6I GTAC 6 cut(s) 306, 359, 379, 729, 863, 1051
CviAII CATG 8 cut(s) 135, 250, 370, 478, 712, 803, 1054, 1254
CviQI GTAC 6 cut(s) 306, 359, 379, 729, 863, 1051
DdeI CTNAG 2 cut(s) 929, 1044
DpnI GATC 6 cut(s) 54, 228, 428, 482, 824, 837
DpnII GATC 6 cut(s) 52, 226, 426, 480, 822, 835
EaeI YGGCCR 1 cut(s) 404
Eam1104I CTCTTC 1 cut(s) 1192
EarI CTCTTC 1 cut(s) 1192
EciI GGCGGA 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 814
Eco24I GRGCYC 1 cut(s) 748
Eco32I GATATC 1 cut(s) 67
Eco88I CYCGRG 3 cut(s) 362, 808, 1208
EcoNI CCTNNNNNAGG 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 500
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 369
EcoT22I ATGCAT 1 cut(s) 1259
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 832
FaeI CATG 8 cut(s) 138, 253, 373, 481, 715, 806, 1057, 1257
FaqI GGGAC 2 cut(s) 503, 1071
FatI CATG 8 cut(s) 134, 249, 369, 477, 711, 802, 1053, 1253
FbaI TGATCA 1 cut(s) 480
FblI GTMKAC 1 cut(s) 392
FokI GGATG 4 cut(s) 638, 1007, 1228, 1244
FriOI GRGCYC 1 cut(s) 748
FspBI CTAG 4 cut(s) 45, 1217, 1262, 1270
GlaI GCGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 4 cut(s) 406, 608, 814, 1199
HapII CCGG 3 cut(s) 383, 527, 1143
HgaI GACGC 2 cut(s) 378, 987
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 2 cut(s) 389, 998
Hin1II CATG 8 cut(s) 138, 253, 373, 481, 715, 806, 1057, 1257
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 6 cut(s) 365, 467, 771, 990, 1040, 1213
HpaII CCGG 3 cut(s) 383, 527, 1143
HphI GGTGA 8 cut(s) 173, 197, 236, 409, 631, 806, 893, 1242
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 5 cut(s) 154, 790, 840, 930, 958
Hpy188III TCNNGA 4 cut(s) 424, 512, 820, 1210
Hpy8I GTNNAC 1 cut(s) 393
Hpy99I CGWCG 5 cut(s) 394, 397, 434, 590, 768
HpyAV CCTTC 4 cut(s) 188, 743, 795, 973
HpyCH4III ACNGT 7 cut(s) 224, 397, 538, 563, 593, 794, 881
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 8 cut(s) 88, 344, 353, 441, 1077, 1111, 1238, 1257
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 27, 91, 332, 338, 341, 350, 453
HpyF3I CTNAG 2 cut(s) 929, 1044
HpySE526I ACGT 1 cut(s) 507
Hsp92I GRCGYC 2 cut(s) 389, 998
Hsp92II CATG 8 cut(s) 138, 253, 373, 481, 715, 806, 1057, 1257
HspAI GCGC 1 cut(s) 326
KpnI GGTACC 1 cut(s) 732
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 6 cut(s) 52, 226, 426, 480, 822, 835
LguI GCTCTTC 1 cut(s) 1192
LmnI GCTCC 2 cut(s) 114, 942
LweI GCATC 2 cut(s) 340, 1266
MaeI CTAG 4 cut(s) 45, 1217, 1262, 1270
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 4 cut(s) 171, 637, 875, 881
MalI GATC 6 cut(s) 54, 228, 428, 482, 824, 837
MboI GATC 6 cut(s) 52, 226, 426, 480, 822, 835
MboII GAAGA 8 cut(s) 47, 329, 332, 606, 676, 1042, 1096, 1179
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 465, 748
MluCI AATT 5 cut(s) 78, 161, 631, 1095, 1154
MlyI GAGTC 4 cut(s) 374, 461, 999, 1207
MmeI TCCRAC 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 1259
MseI TTAA 2 cut(s) 141, 738
MslI CAYNNNNRTG 3 cut(s) 210, 213, 1252
MspA1I CMGCKG 3 cut(s) 91, 332, 410
MspI CCGG 3 cut(s) 383, 527, 1143
MspR9I CCNGG 4 cut(s) 383, 502, 527, 1143
MvaI CCWGG 1 cut(s) 502
MwoI GCNNNNNNNGC 8 cut(s) 24, 27, 91, 332, 338, 341, 350, 453
NciI CCSGG 3 cut(s) 383, 527, 1143
NcoI CCATGG 1 cut(s) 369
NdeII GATC 6 cut(s) 52, 226, 426, 480, 822, 835
NlaIII CATG 8 cut(s) 138, 253, 373, 481, 715, 806, 1057, 1257
NlaIV GGNNCC 2 cut(s) 436, 730
NmuCI GTSAC 4 cut(s) 171, 637, 875, 881
NsiI ATGCAT 1 cut(s) 1259
NspV TTCGAA 1 cut(s) 1159
PaeR7I CTCGAG 2 cut(s) 362, 1208
PceI AGGCCT 1 cut(s) 814
PciSI GCTCTTC 1 cut(s) 1192
PfeI GAWTC 2 cut(s) 771, 1040
PflMI CCANNNNNTGG 1 cut(s) 675
PfoI TCCNGGA 1 cut(s) 1141
PleI GAGTC 4 cut(s) 373, 461, 998, 1207
PpsI GAGTC 4 cut(s) 373, 461, 998, 1207
PshAI GACNNNNGTC 1 cut(s) 1063
Psp6I CCWGG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 2 cut(s) 436, 730
PspPI GGNCC 1 cut(s) 606
PspXI VCTCGAGB 1 cut(s) 362
PstI CTGCAG 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 3 cut(s) 91, 332, 410
RsaI GTAC 6 cut(s) 307, 360, 380, 730, 864, 1052
RsaNI GTAC 6 cut(s) 306, 359, 379, 729, 863, 1051
RseI CAYNNNNRTG 3 cut(s) 210, 213, 1252
SalI GTCGAC 1 cut(s) 391
SapI GCTCTTC 1 cut(s) 1192
SaqAI TTAA 2 cut(s) 141, 738
Sau3AI GATC 6 cut(s) 52, 226, 426, 480, 822, 835
Sau96I GGNCC 1 cut(s) 606
ScaI AGTACT 1 cut(s) 360
SchI GAGTC 4 cut(s) 374, 461, 999, 1207
ScrFI CCNGG 4 cut(s) 383, 502, 527, 1143
SduI GDGCHC 2 cut(s) 465, 748
SfaNI GCATC 2 cut(s) 340, 1266
SfcI CTRYAG 3 cut(s) 86, 287, 537
Sfr274I CTCGAG 2 cut(s) 362, 1208
SfuI TTCGAA 1 cut(s) 1159
SgrDI CGTCGACG 1 cut(s) 391
SlaI CTCGAG 2 cut(s) 362, 1208
SmiMI CAYNNNNRTG 3 cut(s) 210, 213, 1252
SmlI CTYRAG 2 cut(s) 362, 1208
SmoI CTYRAG 2 cut(s) 362, 1208
Sse9I AATT 5 cut(s) 78, 161, 631, 1095, 1154
SseBI AGGCCT 1 cut(s) 814
SsiI CCGC 2 cut(s) 403, 679
SspMI CTAG 4 cut(s) 45, 1217, 1262, 1270
StuI AGGCCT 1 cut(s) 814
StyD4I CCNGG 4 cut(s) 381, 500, 525, 1141
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 7 cut(s) 224, 397, 538, 563, 593, 794, 881
TaiI ACGT 1 cut(s) 510
TaqI TCGA 7 cut(s) 229, 363, 392, 465, 766, 1159, 1209
TasI AATT 5 cut(s) 78, 161, 631, 1095, 1154
TatI WGTACW 2 cut(s) 358, 1050
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 2 cut(s) 771, 1040
Tru1I TTAA 2 cut(s) 141, 738
Tru9I TTAA 2 cut(s) 141, 738
TscAI CASTG 1 cut(s) 758
TseFI GTSAC 4 cut(s) 171, 637, 875, 881
Tsp45I GTSAC 4 cut(s) 171, 637, 875, 881
TspDTI ATGAA 4 cut(s) 17, 154, 700, 992
TspGWI ACGGA 3 cut(s) 101, 752, 857
TspRI CASTG 1 cut(s) 758
Van91I CCANNNNNTGG 1 cut(s) 675
XagI CCTNNNNNAGG 1 cut(s) 499
XapI RAATTY 5 cut(s) 78, 161, 631, 1095, 1154
XhoI CTCGAG 2 cut(s) 362, 1208
XmiI GTMKAC 1 cut(s) 392
XspI CTAG 4 cut(s) 45, 1217, 1262, 1270
ZrmI AGTACT 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.