Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012644

Physical Location & Seq

Genomic Coordinates Forward (+)

49268729 .. 49270906

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAAAAGAAAGAGATAGAAGGCCGGTCAAGTTCTGCTCACTTTCTCCCTCTCTGTCAAAATCCCCTCTGCTCCCAAAACCCTAACCATTGCCACTGCTCCTTCTCCACTCGCAACCCCATCCCCGCCGCCCAGCCTTTCTCCTCTTCTTCTCCGACGGGACCGCCTTCAACAGCGTCGTCGAGGAGCTCAAGAATTGCACCACTCGCGTCCCCCAAGTGCTTCACGTTTCCGGCAATGGAGGAAGCACCGCCGAGATTCTCTGCGTCCTCGGTGATCCGGCCGTCGGAGATACACTGTCCGGCCGATGTGCATTTGGTAAGAAGTTTGATCAATTTCTTAACTGGGTTTATTGATTTGGATGTTGGAATTGCTATTCCAGTATGTAGTTCAATCTTGTCAATTCCTTCAGAAAGGGTTATAAGCTTCTCAGCTTTCTCAGTGCTTTCGGTTATAAGCAACGCCTGTTTGTGCACACATCTGATGGACATCTTCTATCGAATGGGGTTATCTGACAAGGATATTATTGCAGTCTCTGGGGCTCATACGCTGGGAAGAGCACATCCAGAGAGATCTGGTTTTGATGGTCCTTGGACCCCTGAATCTGAAATTCTGAATGCATTTGTACTCATTGTTGATACCAGAGAATTGCTGAAAGGGGAATCAGAGGGATTGCTGAAACTCCCATCAGATACAGCTCTGTTAGATGATGCTGAGTTCCGTAAATATGTTGAGCTATATGTAAAGACTAGCTTGCTGTACTATGCAAATGGAACAGCTCTTCAGGCCCTGCTCAAAATGGGTGATTTGCTGATGGAAATGAGGATGATTGGTGACTTGTGCTGTCTAGTCTCCATCGTTCTTACTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

291

Amino Acids

31.52

Weight (kDa)

6.06

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	159 - 248	1.6e-08	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52500
malus_domestica	MD05G1302500.v1.1 MD16G1033100.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259491 RchiOBHm_Chr6g0290121
rosa_laevigata	RLG00000014201 RLG00000015278
rosa_multiflora	Rmu_sc0005711.1_g000010
rosa_roxburghii	Rroxscaffold_7G00177350
rosa_rugosa	Rorug06G0209700 Rorug06G0209900
rosa_samantha	Rh1CG249200 Rh5BG077800 Rh6AG320300 Rh6BG327600 Rh6CG094100 Rh6CG333700
rosa_wichuraiana	Rw6G027640 Rw6G027670

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	422, 455, 871
AccII	CGCG	1 cut(s)	209
AciI	CCGC	4 cut(s)	126, 129, 164, 251
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	2 cut(s)	281, 303
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	2 cut(s)	393, 767
AfaI	GTAC	2 cut(s)	627, 761
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	171, 393
AluBI	AGCT	7 cut(s)	189, 426, 434, 698, 736, 753, 779
AluI	AGCT	7 cut(s)	189, 426, 434, 698, 736, 753, 779
Alw21I	GWGCWC	3 cut(s)	191, 476, 562
Alw26I	GTCTC	2 cut(s)	538, 856
Alw44I	GTGCAC	1 cut(s)	472
AlwI	GGATC	1 cut(s)	271
AlwNI	CAGNNNCTG	2 cut(s)	536, 790
AoxI	GGCC	4 cut(s)	22, 281, 303, 786
ApaLI	GTGCAC	1 cut(s)	472
ApoI	RAATTY	1 cut(s)	609
AspS9I	GGNCC	4 cut(s)	161, 587, 594, 787
AsuHPI	GGTGA	3 cut(s)	286, 815, 845
AvaII	GGWCC	3 cut(s)	161, 587, 594
BaeGI	GKGCMC	1 cut(s)	476
BanII	GRGCYC	2 cut(s)	191, 544
Bbv12I	GWGCWC	3 cut(s)	191, 476, 562
BccI	CCATC	6 cut(s)	128, 478, 578, 694, 808, 863
BceAI	ACGGC	1 cut(s)	268
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	538, 856
BfaI	CTAG	2 cut(s)	750, 848
BglII	AGATCT	1 cut(s)	572
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme18I	GGWCC	3 cut(s)	161, 587, 594
BmgT120I	GGNCC	4 cut(s)	161, 587, 594, 787
BmiI	GGNNCC	2 cut(s)	162, 596
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	700
BmuI	ACTGGG	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	270, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	349, 380
Bse3DI	GCAATG	2 cut(s)	88, 243
Bse8I	GATNNNNATC	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	270, 590
BseGI	GGATG	4 cut(s)	120, 367, 562, 831
BseJI	GATNNNNATC	1 cut(s)	488
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	2 cut(s)	88, 243
BseMII	CTCAG	3 cut(s)	444, 453, 705
BseNI	ACTGG	2 cut(s)	349, 380
BseRI	GAGGAG	2 cut(s)	133, 199
BseSI	GKGCMC	1 cut(s)	476
BseX3I	CGGCCG	2 cut(s)	281, 303
BseYI	CCCAGC	2 cut(s)	132, 550
Bsh1236I	CGCG	1 cut(s)	209
Bsh1285I	CGRYCG	2 cut(s)	284, 306
BshFI	GGCC	4 cut(s)	24, 283, 305, 788
BsiEI	CGRYCG	2 cut(s)	284, 306
BsiHKAI	GWGCWC	3 cut(s)	191, 476, 562
BsiSI	CCGG	4 cut(s)	25, 233, 280, 302
BslFI	GGGAC	2 cut(s)	174, 196
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	2 cut(s)	538, 856
BsmFI	GGGAC	2 cut(s)	174, 196
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	4 cut(s)	24, 283, 305, 788
Bsp1286I	GDGCHC	4 cut(s)	191, 476, 544, 562
Bsp143I	GATC	3 cut(s)	276, 330, 572
BspACI	CCGC	4 cut(s)	126, 129, 164, 251
BspANI	GGCC	4 cut(s)	24, 283, 305, 788
BspCNI	CTCAG	3 cut(s)	443, 452, 706
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	162, 596
BspPI	GGATC	1 cut(s)	271
BspQI	GCTCTTC	2 cut(s)	550, 786
BsrDI	GCAATG	2 cut(s)	88, 243
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	349, 380
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	270, 590
BssMI	GATC	3 cut(s)	276, 330, 572
BssT1I	CCWWGG	1 cut(s)	590
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	3 cut(s)	151, 550, 786
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	3 cut(s)	430, 439, 714
BstF5I	GGATG	4 cut(s)	120, 367, 562, 831
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	3 cut(s)	279, 333, 575
BstMAI	GTCTC	2 cut(s)	538, 856
BstMBI	GATC	3 cut(s)	276, 330, 572
BstMCI	CGRYCG	2 cut(s)	284, 306
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 785
BstSLI	GKGCMC	1 cut(s)	476
BstUI	CGCG	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BstZI	CGGCCG	2 cut(s)	281, 303
BsuRI	GGCC	4 cut(s)	24, 283, 305, 788
BtsCI	GGATG	4 cut(s)	120, 367, 562, 831
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	3 cut(s)	94, 295, 447
Cac8I	GCNNGC	1 cut(s)	755
CaiI	CAGNNNCTG	2 cut(s)	536, 790
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	4 cut(s)	161, 587, 594, 787
CseI	GACGC	3 cut(s)	165, 198, 255
Csp6I	GTAC	2 cut(s)	626, 760
CviQI	GTAC	2 cut(s)	626, 760
DdeI	CTNAG	3 cut(s)	430, 439, 714
DpnI	GATC	3 cut(s)	278, 332, 574
DpnII	GATC	3 cut(s)	276, 330, 572
EaeI	YGGCCR	2 cut(s)	281, 303
EagI	CGGCCG	2 cut(s)	281, 303
Eam1104I	CTCTTC	3 cut(s)	151, 550, 786
EarI	CTCTTC	3 cut(s)	151, 550, 786
Ecl136II	GAGCTC	1 cut(s)	189
EclXI	CGGCCG	2 cut(s)	281, 303
Eco130I	CCWWGG	1 cut(s)	590
Eco24I	GRGCYC	2 cut(s)	191, 544
Eco47I	GGWCC	3 cut(s)	161, 587, 594
Eco52I	CGGCCG	2 cut(s)	281, 303
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	393, 767
EcoICRI	GAGCTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	787
EcoT14I	CCWWGG	1 cut(s)	590
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	2 cut(s)	191, 544
ErhI	CCWWGG	1 cut(s)	590
FaiI	YATR	9 cut(s)	385, 422, 455, 546, 729, 739, 741, 765, 871
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	2 cut(s)	174, 196
FauI	CCCGC	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	4 cut(s)	107, 374, 549, 838
FriOI	GRGCYC	2 cut(s)	191, 544
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	2 cut(s)	750, 848
GluI	GCNGC	1 cut(s)	129
GsaI	CCCAGC	2 cut(s)	136, 554
HaeIII	GGCC	4 cut(s)	24, 283, 305, 788
HapII	CCGG	4 cut(s)	25, 233, 280, 302
HgaI	GACGC	3 cut(s)	165, 198, 255
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	3 cut(s)	258, 602, 662
HpaII	CCGG	4 cut(s)	25, 233, 280, 302
HphI	GGTGA	3 cut(s)	286, 815, 845
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	9 cut(s)	156, 289, 412, 483, 514, 607, 615, 667, 691
Hpy188III	TCNNGA	2 cut(s)	192, 566
Hpy8I	GTNNAC	1 cut(s)	474
Hpy99I	CGWCG	4 cut(s)	160, 181, 184, 289
HpyAV	CCTTC	4 cut(s)	14, 112, 177, 417
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	6 cut(s)	200, 313, 474, 530, 620, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 785
HpyF3I	CTNAG	3 cut(s)	430, 439, 714
HpySE526I	ACGT	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	276, 330, 572
LguI	GCTCTTC	2 cut(s)	550, 786
LmnI	GCTCC	3 cut(s)	77, 104, 186
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	2 cut(s)	750, 848
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	3 cut(s)	278, 332, 574
MboI	GATC	3 cut(s)	276, 330, 572
MboII	GAAGA	5 cut(s)	138, 141, 484, 567, 773
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	4 cut(s)	191, 476, 544, 562
MluCI	AATT	6 cut(s)	195, 334, 369, 402, 609, 647
MmeI	TCCRAC	3 cut(s)	179, 267, 346
MnlI	CCTC	8 cut(s)	60, 77, 154, 177, 235, 280, 661, 816
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	1 cut(s)	341
MspI	CCGG	4 cut(s)	25, 233, 280, 302
Mva1269I	GAATGC	1 cut(s)	622
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	206, 785
NdeII	GATC	3 cut(s)	276, 330, 572
NlaIV	GGNNCC	2 cut(s)	162, 596
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	833
NsiI	ATGCAT	1 cut(s)	622
PciSI	GCTCTTC	2 cut(s)	550, 786
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	3 cut(s)	258, 602, 662
PkrI	GCNGC	1 cut(s)	130
PsiI	TTATAA	3 cut(s)	422, 455, 871
Psp124BI	GAGCTC	1 cut(s)	191
PspFI	CCCAGC	2 cut(s)	132, 550
PspN4I	GGNNCC	2 cut(s)	162, 596
PspPI	GGNCC	4 cut(s)	161, 587, 594, 787
PstNI	CAGNNNCTG	2 cut(s)	536, 790
PsuI	RGATCY	1 cut(s)	572
RsaI	GTAC	2 cut(s)	627, 761
RsaNI	GTAC	2 cut(s)	626, 760
SacI	GAGCTC	1 cut(s)	191
SapI	GCTCTTC	2 cut(s)	550, 786
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	3 cut(s)	276, 330, 572
Sau96I	GGNCC	4 cut(s)	161, 587, 594, 787
SduI	GDGCHC	4 cut(s)	191, 476, 544, 562
SetI	ASST	8 cut(s)	191, 230, 428, 436, 700, 738, 755, 781
SfaNI	GCATC	1 cut(s)	700
SinI	GGWCC	3 cut(s)	161, 587, 594
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	6 cut(s)	195, 334, 369, 402, 609, 647
SsiI	CCGC	4 cut(s)	126, 129, 164, 251
SspMI	CTAG	2 cut(s)	750, 848
SstI	GAGCTC	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	590
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	2 cut(s)	182, 499
TasI	AATT	6 cut(s)	195, 334, 369, 402, 609, 647
TatI	WGTACW	2 cut(s)	625, 759
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	3 cut(s)	258, 602, 662
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	3 cut(s)	101, 302, 447
TseFI	GTSAC	1 cut(s)	833
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	3 cut(s)	101, 302, 447
VneI	GTGCAC	1 cut(s)	472
VpaK11BI	GGWCC	3 cut(s)	161, 587, 594
XapI	RAATTY	1 cut(s)	609
XspI	CTAG	2 cut(s)	750, 848
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.