Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012644

Physical Location & Seq

Genomic Coordinates Forward (+)

16878502 .. 16881249

Gene Structure 2748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGGTGTGTATGTACATGTTGACAGGAAAGCATGCAGTTCTGCTGCATTTTCAAAGGAGCAAGCTAGTGCGCTGGTGTTGCCCACTGCCAGATTTATCAATTCTTGTGATAAGGTGCAAATTCAACTGGCACCTCAGAAATGTATTAGTTTTTCCTTTTTCTTAGTTGACTTGGTTAAAGGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

62

Amino Acids

6.77

Weight (kDa)

8.84

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52500
malus_domestica	MD05G1302500.v1.1 MD16G1033100.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259491 RchiOBHm_Chr6g0290121
rosa_laevigata	RLG00000014201 RLG00000015278
rosa_multiflora	Rmu_sc0005711.1_g000010
rosa_roxburghii	Rroxscaffold_7G00177350
rosa_rugosa	Rorug06G0209700 Rorug06G0209900
rosa_samantha	Rh1CG249200 Rh5BG077800 Rh6AG320300 Rh6BG327600 Rh6CG094100 Rh6CG333700
rosa_wichuraiana	Rw6G027640 Rw6G027670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	120
AfaI	GTAC	1 cut(s)	15
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	54, 125
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	66
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	130
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	34, 63
BstDEI	CTNAG	2 cut(s)	135, 163
BstHHI	GCGC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNSI	RCATGY	2 cut(s)	20, 36
BstV1I	GCAGC	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	34, 63
CfoI	GCGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	2 cut(s)	17, 33
CviJI	RGCY	1 cut(s)	65
CviKI_1	RGCY	1 cut(s)	65
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	2 cut(s)	135, 163
FaeI	CATG	2 cut(s)	20, 36
FaiI	YATR	3 cut(s)	12, 18, 34
FatI	CATG	2 cut(s)	16, 32
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	20, 36
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	2 cut(s)	22, 169
HindII	GTYRAC	2 cut(s)	22, 169
Hpy166II	GTNNAC	2 cut(s)	22, 169
Hpy188I	TCNGA	1 cut(s)	138
Hpy8I	GTNNAC	2 cut(s)	22, 169
HpyCH4V	TGCA	3 cut(s)	36, 47, 118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	135, 163
Hsp92II	CATG	2 cut(s)	20, 36
HspAI	GCGC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	4 cut(s)	10, 59, 103, 113
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	66
MluCI	AATT	2 cut(s)	100, 120
MnlI	CCTC	1 cut(s)	144
MseI	TTAA	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	20, 36
NlaIV	GGNNCC	1 cut(s)	132
NspI	RCATGY	2 cut(s)	20, 36
PaeI	GCATGC	1 cut(s)	36
PciI	ACATGT	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	46
PscI	ACATGT	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	132
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	45
SetI	ASST	4 cut(s)	67, 117, 136, 184
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	100, 120
SspMI	CTAG	1 cut(s)	66
TasI	AATT	2 cut(s)	100, 120
TatI	WGTACW	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	1 cut(s)	44
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	2 cut(s)	20, 36
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.