Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000948

Physical Location & Seq

Genomic Coordinates Reverse (-)

18486259 .. 18487958

Gene Structure 1700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1203500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGATTACGAAAGAGCGCGTAACTTCGTGAAAGGAAAGCGTGTAACAGTTGTTGGATTTCAGAAATCTGCACTGGACATTGCAATGGAGTGTTCGAACGCAAATGGGATTGAACATCCATGCACAGTAATTTACAAGACAGAGCATTGGACTCTTCCTGACTATCTTCCATGGGGTGTTCCCCTGACATACCTATACGTTAATCGCTTCTCGGAGCTGTTGATTCATAAGCCTGGTGAAGGCATCCTACTTGGTCTCCTTGCAACAATTCTTTCACCTCTGAGATGGGGATTTTCAAAATTTGTTGAAAGCTACGTAACTAAGAAGCTTGGGTTGGCCAAGTACGGAATGGTACCTAAGCATTGTTTTCTTCAAGAAATTAGTTCTTGTCTGATCTCAACAATACCGGAAAAGTTCTACGATCGAGTCCAAGAGGGAAGCATCATACTGAAAAAATCCCCCAGCAGCTTCAGCTTTTGCCAGGAAGGCGTTTTGGTTGAAGGGGAAGTATCCCCTGTGAAGACAGATTTGGTGATACTCGCTACTGGGTTTAGAGGTGATAAAAAGCTCAAAGACATCTTTGCGTCTCCTACCTTTCAGGATTATATAGCTGGTTCGCCGGAGGCCATATTACCCCTCTACAGGGAATGCATACATGGACGAATTCCACAACTAGCCGTAATTGGATTTTCCGAGAGTCTTTCAAACTTGTGCACCTCCGAGATGAGATGCAGGTGGGTAGCTGAGCTTCTTGGAGGCACATTTACGTTACCAAGCATAAAAGAGATGGAGAAAGATGTGAACGAATGGGACGGATTCGCAAAGCGATACGCGGGCAAATACTATCGGAGATCATGCAACGGTACCGTTCATATATGGTACAATGACCAGTTGTGCAAGGACATGGGATGGAACCCTAAAAGAAAGAAGGGACTATTTGCTGAATTATTTGAGCCTTATGGACCATTGGATTACGCTCCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

329

Amino Acids

37.18

Weight (kDa)

8.41

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	3 - 307	4.2e-16	Flavin-binding monooxygenase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16430 FvH4_2g16450
malus_domestica	MD00G1083300.v1.1 MD00G1083500.v1.1 MD05G1133000.v1.1 MD16G1203500.v1.1 MD16G1203700.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1 Prupe.8G177100_v2.0.a1
pyrus_communis	pycom05g13010 pycom05g13030 pycom05g13040
rosa_chinensis	RchiOBHm_Chr6g0280221 RchiOBHm_Chr6g0280281 RchiOBHm_Chr6g0280291 RchiOBHm_Chr6g0280311 RchiOBHm_Chr6g0280341
rosa_laevigata	RLG00000013067 RLG00000013073 RLG00000013075 RLG00000013076
rosa_multiflora	Rmu_sc0000757.1_g000002 Rmu_sc0001572.1_g000020 Rmu_sc0001572.1_g000034 Rmu_sc0002826.1_g000002 Rmu_sc0002858.1_g000010 Rmu_sc0002858.1_g000031 Rmu_sc0004211.1_g000005 Rmu_sc0010624.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188150 Rroxscaffold_7G00188190 Rroxscaffold_7G00188220 Rroxscaffold_7G00188230 Rroxscaffold_7G00188240 Rroxscaffold_7G00188270 Rroxscaffold_7G00188290
rosa_rugosa	Rorug06G0130900 Rorug06G0131200 Rorug06G0131200 Rorug06G0131200 Rorug06G0131500
rosa_samantha	Rh6AG241200 Rh6AG241800 Rh6AG241900 Rh6AG242100 Rh6AG242200 Rh6AG242700 Rh6AG242900 Rh6BG244800 Rh6BG245400 Rh6BG245500 Rh6BG245700 Rh6CG246700 Rh6CG247000 Rh6DG237500 Rh6DG238000 Rh6DG238300 Rh6DG238600
rosa_wichuraiana	Rw5G027390 Rw6G021000 Rw6G021020 Rw6G021040 Rw6G021070 Rw6G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	723
Acc36I	ACCTGC	1 cut(s)	723
Acc65I	GGTACC	2 cut(s)	352, 863
AccB1I	GGYRCC	2 cut(s)	352, 863
AccII	CGCG	2 cut(s)	19, 833
AciI	CCGC	1 cut(s)	833
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	2 cut(s)	299, 663
AcuI	CTGAAG	1 cut(s)	454
AfaI	GTAC	4 cut(s)	344, 354, 865, 881
AfiI	CCNNNNNNNGG	3 cut(s)	239, 642, 643
AgsI	TTSAA	6 cut(s)	113, 297, 308, 374, 500, 705
AjnI	CCWGG	2 cut(s)	232, 480
AjuI	GAANNNNNNNTTGG	4 cut(s)	317, 349, 512, 544
AluBI	AGCT	9 cut(s)	217, 312, 328, 468, 474, 568, 611, 743, 748
AluI	AGCT	9 cut(s)	217, 312, 328, 468, 474, 568, 611, 743, 748
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	2 cut(s)	260, 591
Alw44I	GTGCAC	1 cut(s)	712
AoxI	GGCC	2 cut(s)	336, 624
ApaLI	GTGCAC	1 cut(s)	712
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	2 cut(s)	299, 663
Asp718I	GGTACC	2 cut(s)	352, 863
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	962
AsuHPI	GGTGA	4 cut(s)	248, 267, 544, 569
AsuII	TTCGAA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	962
BaeGI	GKGCMC	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	352, 863
BarI	GAAGNNNNNNTAC	4 cut(s)	231, 263, 732, 764
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	3 cut(s)	279, 781, 903
BceAI	ACGGC	1 cut(s)	662
BciT130I	CCWGG	2 cut(s)	234, 482
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	260, 591
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	640
BfuAI	ACCTGC	1 cut(s)	723
BfuI	GTATCC	1 cut(s)	520
BglI	GCCNNNNNGGC	1 cut(s)	486
BisI	GCNGC	1 cut(s)	466
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	1 cut(s)	467
Bme1390I	CCNGG	2 cut(s)	234, 482
Bme18I	GGWCC	1 cut(s)	962
BmgT120I	GGNCC	1 cut(s)	962
BmiI	GGNNCC	3 cut(s)	354, 865, 914
BmrFI	CCNGG	2 cut(s)	234, 482
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	3 cut(s)	252, 450, 719
BmuI	ACTGGG	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	744
Bpu14I	TTCGAA	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 642, 643
Bse1I	ACTGG	3 cut(s)	78, 550, 889
Bse3DI	GCAATG	2 cut(s)	78, 90
BseBI	CCWGG	2 cut(s)	234, 482
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	3 cut(s)	115, 243, 914
BseLI	CCNNNNNNNGG	3 cut(s)	239, 642, 643
BseMI	GCAATG	2 cut(s)	78, 90
BseMII	CTCAG	2 cut(s)	272, 735
BseNI	ACTGG	3 cut(s)	78, 550, 889
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	1 cut(s)	477
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	2 cut(s)	19, 833
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	338, 626
BshNI	GGYRCC	2 cut(s)	352, 863
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	716
BsiSI	CCGG	2 cut(s)	407, 620
BslFI	GGGAC	2 cut(s)	824, 945
BslI	CCNNNNNNNGG	3 cut(s)	239, 642, 643
BsmAI	GTCTC	2 cut(s)	260, 591
BsmBI	CGTCTC	1 cut(s)	591
BsmFI	GGGAC	2 cut(s)	824, 945
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	338, 626
Bso31I	GGTCTC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	716
Bsp143I	GATC	3 cut(s)	393, 421, 851
Bsp1720I	GCTNAGC	1 cut(s)	744
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	1 cut(s)	833
BspANI	GGCC	2 cut(s)	338, 626
BspCNI	CTCAG	2 cut(s)	273, 736
BspFNI	CGCG	2 cut(s)	19, 833
BspLI	GGNNCC	3 cut(s)	354, 865, 914
BspMI	ACCTGC	1 cut(s)	723
BspT104I	TTCGAA	1 cut(s)	95
BspT107I	GGYRCC	2 cut(s)	352, 863
BspTNI	GGTCTC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	78, 90
BsrI	ACTGG	3 cut(s)	78, 550, 889
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	3 cut(s)	393, 421, 851
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	2 cut(s)	234, 482
Bst4CI	ACNGT	4 cut(s)	49, 127, 863, 868
Bst6I	CTCTTC	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	316
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	835
BstDEI	CTNAG	4 cut(s)	281, 321, 357, 744
BstDSI	CCRYGG	1 cut(s)	170
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	3 cut(s)	115, 243, 914
BstFNI	CGCG	2 cut(s)	19, 833
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	396, 424, 854
BstMAI	GTCTC	2 cut(s)	260, 591
BstMBI	GATC	3 cut(s)	393, 421, 851
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	2 cut(s)	471, 486
BstNI	CCWGG	2 cut(s)	234, 482
BstSCI	CCNGG	2 cut(s)	232, 480
BstSFI	CTRYAG	1 cut(s)	640
BstSLI	GKGCMC	1 cut(s)	716
BstSNI	TACGTA	1 cut(s)	316
BstUI	CGCG	2 cut(s)	19, 833
BstV1I	GCAGC	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	527
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	338, 626
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	115, 243, 914
BtsIMutI	CAGTG	1 cut(s)	71
BveI	ACCTGC	1 cut(s)	723
Cac8I	GCNNGC	1 cut(s)	835
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	962
CseI	GACGC	1 cut(s)	573
Csp6I	GTAC	4 cut(s)	343, 353, 864, 880
CviAII	CATG	5 cut(s)	120, 171, 656, 855, 904
CviQI	GTAC	4 cut(s)	343, 353, 864, 880
DdeI	CTNAG	4 cut(s)	281, 321, 357, 744
DpnI	GATC	3 cut(s)	395, 423, 853
DpnII	GATC	3 cut(s)	393, 421, 851
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco105I	TACGTA	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	962
Eco57I	CTGAAG	1 cut(s)	454
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	232, 480
EcoT14I	CCWWGG	1 cut(s)	170
EcoT22I	ATGCAT	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	5 cut(s)	123, 174, 659, 858, 907
FaqI	GGGAC	2 cut(s)	824, 945
FatI	CATG	5 cut(s)	119, 170, 655, 854, 903
FauI	CCCGC	1 cut(s)	826
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	3 cut(s)	102, 230, 921
Fsp4HI	GCNGC	1 cut(s)	466
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	466
GsaI	CCCAGC	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	338, 626
HapII	CCGG	2 cut(s)	407, 620
HgaI	GACGC	1 cut(s)	573
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	5 cut(s)	123, 174, 659, 858, 907
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	5 cut(s)	151, 223, 426, 697, 816
HpaII	CCGG	2 cut(s)	407, 620
HphI	GGTGA	4 cut(s)	248, 267, 544, 569
Hpy166II	GTNNAC	2 cut(s)	714, 802
Hpy188I	TCNGA	7 cut(s)	63, 214, 282, 393, 694, 721, 849
Hpy188III	TCNNGA	4 cut(s)	28, 158, 374, 599
Hpy8I	GTNNAC	2 cut(s)	714, 802
HpyAV	CCTTC	4 cut(s)	233, 479, 494, 922
HpyCH4III	ACNGT	4 cut(s)	49, 127, 863, 868
HpyCH4IV	ACGT	3 cut(s)	198, 315, 767
HpyCH4V	TGCA	9 cut(s)	71, 83, 123, 263, 651, 714, 732, 858, 897
HpyF10VI	GCNNNNNNNGC	2 cut(s)	471, 486
HpyF3I	CTNAG	4 cut(s)	281, 321, 357, 744
HpySE526I	ACGT	3 cut(s)	198, 315, 767
Hsp92II	CATG	5 cut(s)	123, 174, 659, 858, 907
HspAI	GCGC	1 cut(s)	17
KpnI	GGTACC	2 cut(s)	356, 867
Kzo9I	GATC	3 cut(s)	393, 421, 851
LmnI	GCTCC	2 cut(s)	214, 982
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	3 cut(s)	252, 450, 719
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	3 cut(s)	198, 315, 767
MaeIII	GTNAC	4 cut(s)	20, 43, 316, 768
MalI	GATC	3 cut(s)	395, 423, 853
MboI	GATC	3 cut(s)	393, 421, 851
MboII	GAAGA	4 cut(s)	146, 158, 362, 532
MhlI	GDGCHC	1 cut(s)	716
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	7 cut(s)	129, 267, 299, 378, 663, 681, 944
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	3 cut(s)	145, 435, 706
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	7 cut(s)	288, 427, 548, 616, 647, 727, 749
Mox20I	TGGCCA	1 cut(s)	338
Mph1103I	ATGCAT	1 cut(s)	653
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	201, 985
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	2 cut(s)	407, 620
MspR9I	CCNGG	2 cut(s)	234, 482
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	2 cut(s)	234, 482
MvnI	CGCG	2 cut(s)	19, 833
MwoI	GCNNNNNNNGC	2 cut(s)	471, 486
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	3 cut(s)	393, 421, 851
NlaIII	CATG	5 cut(s)	123, 174, 659, 858, 907
NlaIV	GGNNCC	3 cut(s)	354, 865, 914
NsiI	ATGCAT	1 cut(s)	653
NspV	TTCGAA	1 cut(s)	95
PaqCI	CACCTGC	1 cut(s)	723
PctI	GAATGC	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	223, 816
PkrI	GCNGC	1 cut(s)	467
Ple19I	CGATCG	1 cut(s)	424
PleI	GAGTC	3 cut(s)	145, 434, 705
PpsI	GAGTC	3 cut(s)	145, 434, 705
Ppu21I	YACGTR	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	232, 480
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	232, 480
PspN4I	GGNNCC	3 cut(s)	354, 865, 914
PspPI	GGNCC	1 cut(s)	962
PvuI	CGATCG	1 cut(s)	424
RsaI	GTAC	4 cut(s)	344, 354, 865, 881
RsaNI	GTAC	4 cut(s)	343, 353, 864, 880
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	201, 985
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	3 cut(s)	393, 421, 851
Sau96I	GGNCC	1 cut(s)	962
SchI	GAGTC	3 cut(s)	145, 435, 706
ScrFI	CCNGG	2 cut(s)	234, 482
SduI	GDGCHC	1 cut(s)	716
SfaNI	GCATC	3 cut(s)	252, 450, 719
SfcI	CTRYAG	1 cut(s)	640
SfuI	TTCGAA	1 cut(s)	95
SinI	GGWCC	1 cut(s)	962
SmiMI	CAYNNNNRTG	1 cut(s)	83
SnaBI	TACGTA	1 cut(s)	316
Sse9I	AATT	7 cut(s)	129, 267, 299, 378, 663, 681, 944
SsiI	CCGC	1 cut(s)	833
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	2 cut(s)	232, 480
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	4 cut(s)	49, 127, 863, 868
TaiI	ACGT	3 cut(s)	201, 318, 770
TaqI	TCGA	2 cut(s)	95, 424
TasI	AATT	7 cut(s)	129, 267, 299, 378, 663, 681, 944
TfiI	GAWTC	2 cut(s)	223, 816
Tru1I	TTAA	2 cut(s)	201, 985
Tru9I	TTAA	2 cut(s)	201, 985
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	1 cut(s)	465
TspDTI	ATGAA	2 cut(s)	215, 860
TspGWI	ACGGA	2 cut(s)	360, 828
TspRI	CASTG	1 cut(s)	78
VneI	GTGCAC	1 cut(s)	712
VpaK11BI	GGWCC	1 cut(s)	962
XagI	CCTNNNNNAGG	1 cut(s)	237
XapI	RAATTY	2 cut(s)	299, 663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	674
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.