Rw6G021120

flavin-containing monooxygenase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
42223879 .. 42226705
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G021120.1

Sequence Viewer

Length: 1557 bp
ATGGGGAAGAAGGTGGCCATAATAGGAGCTGGGATCAGTGGCCTTCTTGCCTGCAAGTACACCCTTTCAAAGGGCATTCAACCCATCGTGTTCGAATCCTCGAGCACCATCGGAGGGGTATGGACCAAAACTGTTGAGAGTACCAAGCTCCAAACTCCTAAAGCAGTCTACCAATTCTCAGATTTTCCATGGCCTTCTTCAGTGACAGAAGACTTTCCAAACCAGCGTCAAGTTATGGATTACATCCATTCATACGCTCAACATTTCGACTTGCTCAGGCACATCAAATTCAATACCAAAGTGTGTGGTATAGAGTATGAAGGTCCATCAGAGGATGACATGCAATCATGGAGTCTCTGGGCCGGCACCAGTGAGCCTTTCAGCTCGAAAGGGAAATGGAAAGTTATGGTAGAAGACAAACAAAGCCCTTCAACTGAGGTTTACTTGGTAGACTTTGTAGTCCTCTGCCTTGGACGATTCAGTGGTATTCCAAACATTCCTAAATTTCCTCCGAACAAGGGTCCAGAAGAATTTCATGGTGATGTCATACACTCGATGGAATATGCTTCCAAGGATTATGAAAGCGCTGCTGAATTTGTGAAAGGAAAGCAAGTAACAGTTGTTGGGTTTCAGAAATCTGCATTGGACATTGCAATGGAGTGCTCAAATGCAAATGGGGTAGAACATCCATGTACCGTGTTGTACAAGACAGAACACTGGAATGTTCCTGACTATCTCCCATGGGGTGTGCCTCTGGGGTACCTATACCTCAATCGCTTCTCGGAGCTTTTGGTTCATAAGCCCGGTGAAGGCCTCCTACTCAGTCTCCTTGCAACAATTCTTTCACCTCTGAGATGGGCTTTTTCAAAATTTGTTGAAACCTACATAGATAAGAAGCTTGGGTTATCCAAGTATGGAATGGTACCAAAGCATAGTTTCCTTCAACAAATCAGTTCCTGTCTGCTCTCAACCGTGCCTGAAAAATTCTATGACCGAGTCCAAGAAGGAAGCATTTTACTTAAGAAATCTCCCAAATGCTTCAGCTTTTGCCGAGAGGGCATTTTGGTTGAAGGAGAAAACTCCCCTGTAAAGACAGATTTGGTCATATTGGCTACTGGATTTAGAGGTGATGAGAAGCTTAAAGACATCTTTGTGTCACCAACATTTCAAGACTACATAGCTGGATCACCTGAGTCCATTTTACCTCTCTACAGGGAATGCATCCATGGACGAATTCCACAACTAGCTGTAATTGGATTCTCCGTGAGTATCTCAAACTTGTACATATCAGAGATGAGGTGCAGATGGCTAGCAGAGCTTTTTGGAGGCACATTCAAGGTACCAAGCATAAAAGAAATGGAGAAAGATGTGAAACAATGGGATGAGTATGCCAAGCGATACTCCAGAAAATACTACCGGAGATCATGCATCGGAGCGCTTCACATATGGTACAATGACCAATTGTGCAAGGATATGGGATGGAATCCCAAAAGGAAGAAGGGACTTCTTGCTGAACTATTTGAGCCTTATGGCCCAACGGATTATATTTCCTCTTAA

Protein Analysis

518

Amino Acids

58.7

Weight (kDa)

7.85

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 3 - 497 1.9e-44 Flavin-binding monooxygenase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 458
Acc65I GGTACC 3 cut(s) 759, 922, 1339
AccB1I GGYRCC 4 cut(s) 365, 759, 922, 1339
AccI GTMKAC 2 cut(s) 168, 450
AclWI GGATC 2 cut(s) 41, 1192
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 7 cut(s) 287, 503, 530, 593, 869, 983, 1233
AcuI CTGAAG 2 cut(s) 183, 1024
AfaI GTAC 9 cut(s) 59, 142, 694, 704, 761, 924, 1283, 1341, 1451
AfeI AGCGCT 2 cut(s) 586, 1437
AfiI CCNNNNNNNGG 4 cut(s) 70, 114, 518, 809
AflII CTTAAG 1 cut(s) 1019
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
Alw21I GWGCWC 2 cut(s) 107, 665
Alw26I GTCTC 2 cut(s) 359, 830
AlwI GGATC 2 cut(s) 41, 1192
AlwNI CAGNNNCTG 1 cut(s) 957
Ama87I CYCGRG 1 cut(s) 100
Aor51HI AGCGCT 2 cut(s) 586, 1437
AoxI GGCC 6 cut(s) 15, 40, 191, 360, 811, 1531
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 7 cut(s) 287, 503, 530, 593, 869, 983, 1233
Asp700I GAANNNNTTC 2 cut(s) 213, 531
Asp718I GGTACC 3 cut(s) 759, 922, 1339
AspLEI GCGC 2 cut(s) 587, 1438
AspS9I GGNCC 5 cut(s) 123, 323, 360, 521, 1532
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 6 cut(s) 551, 818, 837, 1139, 1149, 1179
AsuII TTCGAA 1 cut(s) 93
AsuNHI GCTAGC 1 cut(s) 1309
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 3 cut(s) 123, 323, 521
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 4 cut(s) 365, 759, 922, 1339
BarI GAAGNNNNNNTAC 2 cut(s) 801, 833
BbsI GAAGAC 2 cut(s) 216, 420
Bbv12I GWGCWC 2 cut(s) 107, 665
BbvI GCAGC 1 cut(s) 574
BccI CCATC 7 cut(s) 92, 116, 334, 550, 849, 1299, 1473
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 2 cut(s) 359, 830
BfaI CTAG 2 cut(s) 1244, 1310
BfmI CTRYAG 1 cut(s) 1210
BfoI RGCGCY 2 cut(s) 588, 1439
BfrI CTTAAG 1 cut(s) 1019
BglI GCCNNNNNGGC 1 cut(s) 1056
BisI GCNGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 589
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 3 cut(s) 123, 323, 521
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 5 cut(s) 123, 323, 360, 521, 1532
BmiI GGNNCC 5 cut(s) 367, 522, 761, 924, 1341
BmrFI CCNGG 1 cut(s) 804
BmsI GCATC 2 cut(s) 1230, 1437
BmtI GCTAGC 1 cut(s) 1313
BpiI GAAGAC 2 cut(s) 216, 420
BpmI CTGGAG 1 cut(s) 1387
Bpu10I CCTNAGC 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 804
BsaJI CCNNGG 5 cut(s) 188, 469, 570, 740, 1225
BsaWI WCCGGW 1 cut(s) 1416
BsaXI ACNNNNNCTCC 2 cut(s) 810, 840
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 114, 518, 809
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 3 cut(s) 369, 722, 1120
Bse3DI GCAATG 2 cut(s) 648, 660
BseDI CCNNGG 5 cut(s) 188, 469, 570, 740, 1225
BseGI GGATG 6 cut(s) 243, 340, 685, 1221, 1387, 1484
BseLI CCNNNNNNNGG 4 cut(s) 70, 114, 518, 809
BseMI GCAATG 2 cut(s) 648, 660
BseMII CTCAG 6 cut(s) 192, 289, 426, 835, 842, 1182
BseNI ACTGG 3 cut(s) 369, 722, 1120
BseXI GCAGC 1 cut(s) 574
BseYI CCCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 1321
BshFI GGCC 6 cut(s) 17, 42, 193, 362, 813, 1533
BshNI GGYRCC 4 cut(s) 365, 759, 922, 1339
BsiHKAI GWGCWC 2 cut(s) 107, 665
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 3 cut(s) 363, 804, 1417
BslFI GGGAC 1 cut(s) 1515
BslI CCNNNNNNNGG 4 cut(s) 70, 114, 518, 809
BsmAI GTCTC 2 cut(s) 359, 830
BsmFI GGGAC 1 cut(s) 1515
BsmI GAATGC 2 cut(s) 75, 1223
BsnI GGCC 6 cut(s) 17, 42, 193, 362, 813, 1533
BsoBI CYCGRG 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 107, 665
Bsp1407I TGTACA 2 cut(s) 702, 1281
Bsp143I GATC 3 cut(s) 33, 1184, 1421
Bsp19I CCATGG 3 cut(s) 188, 740, 1225
BspANI GGCC 6 cut(s) 17, 42, 193, 362, 813, 1533
BspCNI CTCAG 6 cut(s) 191, 288, 427, 834, 843, 1183
BspLI GGNNCC 5 cut(s) 367, 522, 761, 924, 1341
BspOI GCTAGC 1 cut(s) 1313
BspPI GGATC 2 cut(s) 41, 1192
BspT104I TTCGAA 1 cut(s) 93
BspT107I GGYRCC 4 cut(s) 365, 759, 922, 1339
BspTI CTTAAG 1 cut(s) 1019
BsrDI GCAATG 2 cut(s) 648, 660
BsrFI RCCGGY 1 cut(s) 362
BsrGI TGTACA 2 cut(s) 702, 1281
BsrI ACTGG 3 cut(s) 369, 722, 1120
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 5 cut(s) 188, 469, 570, 740, 1225
BssMI GATC 3 cut(s) 33, 1184, 1421
BssT1I CCWWGG 5 cut(s) 188, 469, 570, 740, 1225
Bst4CI ACNGT 4 cut(s) 133, 619, 697, 973
BstAFI CTTAAG 1 cut(s) 1019
BstAUI TGTACA 2 cut(s) 702, 1281
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 3 cut(s) 52, 364, 1311
BstDEI CTNAG 6 cut(s) 178, 275, 435, 821, 851, 1191
BstDSI CCRYGG 3 cut(s) 188, 740, 1225
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 6 cut(s) 243, 340, 685, 1221, 1387, 1484
BstH2I RGCGCY 2 cut(s) 588, 1439
BstHHI GCGC 2 cut(s) 587, 1438
BstKTI GATC 3 cut(s) 36, 1187, 1424
BstMAI GTCTC 2 cut(s) 359, 830
BstMBI GATC 3 cut(s) 33, 1184, 1421
BstMWI GCNNNNNNNGC 2 cut(s) 1056, 1315
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 802
BstSFI CTRYAG 1 cut(s) 1210
BstV1I GCAGC 1 cut(s) 574
BstV2I GAAGAC 2 cut(s) 216, 420
BsuRI GGCC 6 cut(s) 17, 42, 193, 362, 813, 1533
BtgI CCRYGG 3 cut(s) 188, 740, 1225
BtsCI GGATG 6 cut(s) 243, 340, 685, 1221, 1387, 1484
BtsIMutI CAGTG 5 cut(s) 43, 207, 376, 487, 715
Cac8I GCNNGC 3 cut(s) 52, 364, 1311
CaiI CAGNNNCTG 1 cut(s) 957
CfoI GCGC 2 cut(s) 587, 1438
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 5 cut(s) 123, 323, 360, 521, 1532
CseI GACGC 1 cut(s) 215
Csp6I GTAC 9 cut(s) 58, 141, 693, 703, 760, 923, 1282, 1340, 1450
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 8 cut(s) 189, 340, 348, 536, 690, 741, 1226, 1425
CviQI GTAC 9 cut(s) 58, 141, 693, 703, 760, 923, 1282, 1340, 1450
DdeI CTNAG 6 cut(s) 178, 275, 435, 821, 851, 1191
DpnI GATC 3 cut(s) 35, 1186, 1423
DpnII GATC 3 cut(s) 33, 1184, 1421
DrdI GACNNNNNNGTC 1 cut(s) 458
DseDI GACNNNNNNGTC 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 15
Eco130I CCWWGG 5 cut(s) 188, 469, 570, 740, 1225
Eco147I AGGCCT 1 cut(s) 813
Eco47I GGWCC 3 cut(s) 123, 323, 521
Eco47III AGCGCT 2 cut(s) 586, 1437
Eco57I CTGAAG 2 cut(s) 183, 1024
Eco88I CYCGRG 1 cut(s) 100
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 1233
EcoT14I CCWWGG 5 cut(s) 188, 469, 570, 740, 1225
EcoT22I ATGCAT 2 cut(s) 1223, 1430
ErhI CCWWGG 5 cut(s) 188, 469, 570, 740, 1225
FaeI CATG 8 cut(s) 192, 343, 351, 539, 693, 744, 1229, 1428
FaqI GGGAC 1 cut(s) 1515
FatI CATG 8 cut(s) 188, 339, 347, 535, 689, 740, 1225, 1424
FauNDI CATATG 1 cut(s) 1445
FblI GTMKAC 2 cut(s) 168, 450
Fnu4HI GCNGC 1 cut(s) 588
FokI GGATG 6 cut(s) 230, 347, 672, 1208, 1394, 1491
Fsp4HI GCNGC 1 cut(s) 588
FspBI CTAG 2 cut(s) 1244, 1310
GlaI GCGC 2 cut(s) 586, 1437
GluI GCNGC 1 cut(s) 588
GsaI CCCAGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 1387
HaeII RGCGCY 2 cut(s) 588, 1439
HaeIII GGCC 6 cut(s) 17, 42, 193, 362, 813, 1533
HapII CCGG 3 cut(s) 363, 804, 1417
HgaI GACGC 1 cut(s) 215
HhaI GCGC 2 cut(s) 587, 1438
Hin1II CATG 8 cut(s) 192, 343, 351, 539, 693, 744, 1229, 1428
Hin6I GCGC 2 cut(s) 585, 1436
HinP1I GCGC 2 cut(s) 585, 1436
HindIII AAGCTT 2 cut(s) 896, 1136
HinfI GANTC 7 cut(s) 95, 352, 477, 996, 1193, 1257, 1483
HpaII CCGG 3 cut(s) 363, 804, 1417
HphI GGTGA 6 cut(s) 551, 818, 837, 1139, 1149, 1179
Hpy166II GTNNAC 4 cut(s) 60, 169, 442, 451
Hpy188I TCNGA 9 cut(s) 113, 181, 331, 513, 633, 784, 852, 1291, 1433
Hpy188III TCNNGA 4 cut(s) 524, 728, 1169, 1404
Hpy8I GTNNAC 4 cut(s) 60, 169, 442, 451
HpyCH4III ACNGT 4 cut(s) 133, 619, 697, 973
HpyF10VI GCNNNNNNNGC 2 cut(s) 1056, 1315
HpyF3I CTNAG 6 cut(s) 178, 275, 435, 821, 851, 1191
Hsp92II CATG 8 cut(s) 192, 343, 351, 539, 693, 744, 1229, 1428
HspAI GCGC 2 cut(s) 585, 1436
KpnI GGTACC 3 cut(s) 763, 926, 1343
KroI GCCGGC 1 cut(s) 362
KroNI GCCGGC 1 cut(s) 364
Kzo9I GATC 3 cut(s) 33, 1184, 1421
LmnI GCTCC 4 cut(s) 26, 153, 784, 1433
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 2 cut(s) 1230, 1437
MaeI CTAG 2 cut(s) 1244, 1310
MaeIII GTNAC 3 cut(s) 202, 613, 1155
MalI GATC 3 cut(s) 35, 1186, 1423
MboI GATC 3 cut(s) 33, 1184, 1421
MboII GAAGA 6 cut(s) 19, 189, 221, 425, 539, 1507
MfeI CAATTG 1 cut(s) 1460
MhlI GDGCHC 2 cut(s) 107, 665
MlsI TGGCCA 1 cut(s) 17
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 3 cut(s) 361, 1005, 1202
Mox20I TGGCCA 1 cut(s) 17
Mph1103I ATGCAT 2 cut(s) 1223, 1430
MroNI GCCGGC 1 cut(s) 362
MroXI GAANNNNTTC 2 cut(s) 213, 531
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 1020, 1140, 1555
MslI CAYNNNNRTG 4 cut(s) 540, 653, 720, 1151
Msp20I TGGCCA 1 cut(s) 17
MspCI CTTAAG 1 cut(s) 1019
MspI CCGG 3 cut(s) 363, 804, 1417
MspR9I CCNGG 1 cut(s) 804
MunI CAATTG 1 cut(s) 1460
Mva1269I GAATGC 2 cut(s) 75, 1223
MwoI GCNNNNNNNGC 2 cut(s) 1056, 1315
NaeI GCCGGC 1 cut(s) 364
NciI CCSGG 1 cut(s) 804
NcoI CCATGG 3 cut(s) 188, 740, 1225
NdeI CATATG 1 cut(s) 1445
NdeII GATC 3 cut(s) 33, 1184, 1421
NgoMIV GCCGGC 1 cut(s) 362
NheI GCTAGC 1 cut(s) 1309
NlaIII CATG 8 cut(s) 192, 343, 351, 539, 693, 744, 1229, 1428
NlaIV GGNNCC 5 cut(s) 367, 522, 761, 924, 1341
NmeAIII GCCGAG 1 cut(s) 1076
NmuCI GTSAC 2 cut(s) 202, 1155
NsiI ATGCAT 2 cut(s) 1223, 1430
NspI RCATGY 1 cut(s) 343
NspV TTCGAA 1 cut(s) 93
PaeR7I CTCGAG 1 cut(s) 100
PceI AGGCCT 1 cut(s) 813
PctI GAATGC 2 cut(s) 75, 1223
PdiI GCCGGC 1 cut(s) 364
PdmI GAANNNNTTC 2 cut(s) 213, 531
PfeI GAWTC 4 cut(s) 95, 477, 1257, 1483
PflFI GACNNNGTC 1 cut(s) 995
PkrI GCNGC 1 cut(s) 589
PleI GAGTC 3 cut(s) 360, 1004, 1201
PpsI GAGTC 3 cut(s) 360, 1004, 1201
PspFI CCCAGC 1 cut(s) 29
PspN4I GGNNCC 5 cut(s) 367, 522, 761, 924, 1341
PspPI GGNCC 5 cut(s) 123, 323, 360, 521, 1532
PspXI VCTCGAGB 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 957
PsyI GACNNNGTC 1 cut(s) 995
RsaI GTAC 9 cut(s) 59, 142, 694, 704, 761, 924, 1283, 1341, 1451
RsaNI GTAC 9 cut(s) 58, 141, 693, 703, 760, 923, 1282, 1340, 1450
RseI CAYNNNNRTG 4 cut(s) 540, 653, 720, 1151
SaqAI TTAA 3 cut(s) 1020, 1140, 1555
SatI GCNGC 1 cut(s) 588
Sau3AI GATC 3 cut(s) 33, 1184, 1421
Sau96I GGNCC 5 cut(s) 123, 323, 360, 521, 1532
SchI GAGTC 3 cut(s) 361, 1005, 1202
ScrFI CCNGG 1 cut(s) 804
SduI GDGCHC 2 cut(s) 107, 665
SfaNI GCATC 2 cut(s) 1230, 1437
SfcI CTRYAG 1 cut(s) 1210
Sfr274I CTCGAG 1 cut(s) 100
SfuI TTCGAA 1 cut(s) 93
SinI GGWCC 3 cut(s) 123, 323, 521
SlaI CTCGAG 1 cut(s) 100
SmiMI CAYNNNNRTG 4 cut(s) 540, 653, 720, 1151
SmlI CTYRAG 2 cut(s) 100, 1019
SmoI CTYRAG 2 cut(s) 100, 1019
SseBI AGGCCT 1 cut(s) 813
SspMI CTAG 2 cut(s) 1244, 1310
StuI AGGCCT 1 cut(s) 813
StyD4I CCNGG 1 cut(s) 802
StyI CCWWGG 5 cut(s) 188, 469, 570, 740, 1225
TaaI ACNGT 4 cut(s) 133, 619, 697, 973
TaqI TCGA 5 cut(s) 93, 101, 267, 386, 554
TaqII GACCGA 1 cut(s) 1008
TatI WGTACW 3 cut(s) 57, 702, 1281
TfiI GAWTC 4 cut(s) 95, 477, 1257, 1483
Tru1I TTAA 3 cut(s) 1020, 1140, 1555
Tru9I TTAA 3 cut(s) 1020, 1140, 1555
TscAI CASTG 5 cut(s) 43, 207, 376, 487, 722
TseFI GTSAC 2 cut(s) 202, 1155
TseI GCWGC 1 cut(s) 587
Tsp45I GTSAC 2 cut(s) 202, 1155
TspDTI ATGAA 5 cut(s) 240, 333, 524, 594, 785
TspGWI ACGGA 2 cut(s) 1252, 1553
TspRI CASTG 5 cut(s) 43, 207, 376, 487, 722
Tth111I GACNNNGTC 1 cut(s) 995
Vha464I CTTAAG 1 cut(s) 1019
VpaK11BI GGWCC 3 cut(s) 123, 323, 521
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 7 cut(s) 287, 503, 530, 593, 869, 983, 1233
XceI RCATGY 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 916
XhoI CTCGAG 1 cut(s) 100
XmiI GTMKAC 2 cut(s) 168, 450
XmnI GAANNNNTTC 2 cut(s) 213, 531
XspI CTAG 2 cut(s) 1244, 1310
Zsp2I ATGCAT 2 cut(s) 1223, 1430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.