Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000948

Physical Location & Seq

Genomic Coordinates Forward (+)

18532021 .. 18538264

Gene Structure 6244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1203700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAGGCCAATCCGGCGATGAGATGCAAGCTTGGAGTCACTAGGGTGGCATCGGAGAACCATTCAACTCCGGAGGGAAATGGAAGGTTGTTGCCCGATTACTCGAAGATTCATGTGGTGGACTTTGTGATCCTTTGCATCGGGCGATTCAGCGACGTTCCAAACATTCCCGAGTTCCCTCCAAACAAGGGACCAGAAGCATTTCATGGAGAGGTTATACACTCCATGAATTATGCCGACATGGATTACGAAAGCGCAGCTAAATTTGTGGAAGGAAAGCAAGTAACTGTTGTGGGATTTCAGAAATTTGCAATGGACATTGCGATGGAGTGCTCAATCGCAAATGGGGTTGAAAATCCATGCACAGTGTTGTACAAGACAGAACACTGGAATCTTCCTGGCTATCTTCCATGGGGCTTTCCCATCGCATACTTATACTTCAATCGCTTCTCGGAGCTCTTGGAACACAAGCCCGGTGAAGGCATCCAGCTCAGTCTCCTTGCAACAATTATTTCACCTGTGAGATGGGGGTTTTCGAAATTTGTCGAAAGCTATATAAATAAGAAGCTTGGTTTAGCCAAGTATGGAATGGTACCTAAGCACAGTTTCCTTCAAGAAATCAGTTCTTGTATGATAGCAACAGTACCGGAAAAGTTCTTTGATCGAGTCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

225

Amino Acids

25.24

Weight (kDa)

7.04

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	36 - 162	1.8e-08	Flavin-binding monooxygenase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16430 FvH4_2g16450
malus_domestica	MD00G1083300.v1.1 MD00G1083500.v1.1 MD05G1133000.v1.1 MD16G1203500.v1.1 MD16G1203700.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1 Prupe.8G177100_v2.0.a1
pyrus_communis	pycom05g13010 pycom05g13030 pycom05g13040
rosa_chinensis	RchiOBHm_Chr6g0280221 RchiOBHm_Chr6g0280281 RchiOBHm_Chr6g0280291 RchiOBHm_Chr6g0280311 RchiOBHm_Chr6g0280341
rosa_laevigata	RLG00000013067 RLG00000013073 RLG00000013075 RLG00000013076
rosa_multiflora	Rmu_sc0000757.1_g000002 Rmu_sc0001572.1_g000020 Rmu_sc0001572.1_g000034 Rmu_sc0002826.1_g000002 Rmu_sc0002858.1_g000010 Rmu_sc0002858.1_g000031 Rmu_sc0004211.1_g000005 Rmu_sc0010624.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188150 Rroxscaffold_7G00188190 Rroxscaffold_7G00188220 Rroxscaffold_7G00188230 Rroxscaffold_7G00188240 Rroxscaffold_7G00188270 Rroxscaffold_7G00188290
rosa_rugosa	Rorug06G0130900 Rorug06G0131200 Rorug06G0131200 Rorug06G0131200 Rorug06G0131500
rosa_samantha	Rh6AG241200 Rh6AG241800 Rh6AG241900 Rh6AG242100 Rh6AG242200 Rh6AG242700 Rh6AG242900 Rh6BG244800 Rh6BG245400 Rh6BG245500 Rh6BG245700 Rh6CG246700 Rh6CG247000 Rh6DG237500 Rh6DG238000 Rh6DG238300 Rh6DG238600
rosa_wichuraiana	Rw5G027390 Rw6G021000 Rw6G021020 Rw6G021040 Rw6G021070 Rw6G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	592
AccIII	TCCGGA	1 cut(s)	70
AclWI	GGATC	1 cut(s)	124
AcsI	RAATTY	3 cut(s)	263, 305, 539
AfaI	GTAC	3 cut(s)	374, 594, 645
AfiI	CCNNNNNNNGG	2 cut(s)	188, 479
AgsI	TTSAA	4 cut(s)	66, 353, 442, 614
AjnI	CCWGG	1 cut(s)	397
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	6 cut(s)	31, 260, 457, 490, 552, 568
AluI	AGCT	6 cut(s)	31, 260, 457, 490, 552, 568
Alw21I	GWGCWC	2 cut(s)	335, 459
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	3 cut(s)	263, 305, 539
Asp700I	GAANNNNTTC	1 cut(s)	201
Asp718I	GGTACC	1 cut(s)	592
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	2 cut(s)	488, 507
AsuII	TTCGAA	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	2 cut(s)	335, 459
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	3 cut(s)	319, 431, 519
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	14
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	399, 474
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	192, 594
BmrFI	CCNGG	2 cut(s)	399, 474
BmsI	GCATC	4 cut(s)	14, 59, 147, 492
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	410
BsaWI	WCCGGW	2 cut(s)	70, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 479
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	2 cut(s)	318, 318
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	188, 479
BseMI	GCAATG	2 cut(s)	318, 318
BseMII	CTCAG	1 cut(s)	505
BseNI	ACTGG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	2 cut(s)	335, 459
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	4 cut(s)	14, 71, 474, 647
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	188, 479
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	335, 459
Bsp13I	TCCGGA	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	129, 661
Bsp19I	CCATGG	1 cut(s)	410
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	504
BspEI	TCCGGA	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	192, 594
BspPI	GGATC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	592
BsrDI	GCAATG	2 cut(s)	318, 318
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	129, 661
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	4 cut(s)	289, 367, 605, 643
BstAUI	TGTACA	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	491, 597
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	2 cut(s)	132, 664
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	2 cut(s)	129, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	397, 472
BstV1I	GCAGC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	410
BtgZI	GCGATG	3 cut(s)	32, 338, 409
BtsCI	GGATG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	372, 385
Cac8I	GCNNGC	1 cut(s)	29
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	373, 593, 644
CviAII	CATG	6 cut(s)	113, 206, 226, 241, 360, 411
CviQI	GTAC	3 cut(s)	373, 593, 644
DdeI	CTNAG	2 cut(s)	491, 597
DpnI	GATC	2 cut(s)	131, 663
DpnII	GATC	2 cut(s)	129, 661
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	6 cut(s)	116, 209, 229, 244, 363, 414
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	6 cut(s)	112, 205, 225, 240, 359, 410
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	4 cut(s)	14, 71, 474, 647
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	6 cut(s)	116, 209, 229, 244, 363, 414
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	2 cut(s)	29, 566
HinfI	GANTC	5 cut(s)	36, 109, 147, 391, 666
HpaII	CCGG	4 cut(s)	14, 71, 474, 647
HphI	GGTGA	2 cut(s)	488, 507
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	4 cut(s)	55, 303, 454, 671
Hpy188III	TCNNGA	3 cut(s)	71, 170, 614
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	4 cut(s)	78, 266, 473, 620
HpyCH4III	ACNGT	4 cut(s)	289, 367, 605, 643
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	5 cut(s)	27, 138, 311, 363, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	491, 597
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	116, 209, 229, 244, 363, 414
HspAI	GCGC	1 cut(s)	255
Kpn2I	TCCGGA	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	596
Kzo9I	GATC	2 cut(s)	129, 661
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	4 cut(s)	14, 59, 147, 492
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	37, 283
MalI	GATC	2 cut(s)	131, 663
MboI	GATC	2 cut(s)	129, 661
MboII	GAAGA	3 cut(s)	118, 386, 398
MhlI	GDGCHC	2 cut(s)	335, 459
MluCI	AATT	5 cut(s)	229, 263, 305, 507, 539
MlyI	GAGTC	2 cut(s)	45, 675
MnlI	CCTC	3 cut(s)	67, 189, 205
MroI	TCCGGA	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	201
MslI	CAYNNNNRTG	2 cut(s)	44, 323
MspI	CCGG	4 cut(s)	14, 71, 474, 647
MspR9I	CCNGG	2 cut(s)	399, 474
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	474
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	2 cut(s)	129, 661
NlaIII	CATG	6 cut(s)	116, 209, 229, 244, 363, 414
NlaIV	GGNNCC	2 cut(s)	192, 594
NmuCI	GTSAC	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	536
OliI	CACNNNNGTG	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	3 cut(s)	109, 147, 391
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	44, 674
PpsI	GAGTC	2 cut(s)	44, 674
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	192, 594
PspPI	GGNCC	1 cut(s)	191
RsaI	GTAC	3 cut(s)	374, 594, 645
RsaNI	GTAC	3 cut(s)	373, 593, 644
RseI	CAYNNNNRTG	2 cut(s)	44, 323
SacI	GAGCTC	1 cut(s)	459
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	129, 661
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	2 cut(s)	45, 675
ScrFI	CCNGG	2 cut(s)	399, 474
SduI	GDGCHC	2 cut(s)	335, 459
SfaNI	GCATC	4 cut(s)	14, 59, 147, 492
SfuI	TTCGAA	1 cut(s)	536
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	44, 323
Sse9I	AATT	5 cut(s)	229, 263, 305, 507, 539
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	2 cut(s)	397, 472
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	4 cut(s)	289, 367, 605, 643
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	4 cut(s)	104, 536, 546, 664
TasI	AATT	5 cut(s)	229, 263, 305, 507, 539
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	3 cut(s)	109, 147, 391
TscAI	CASTG	2 cut(s)	372, 392
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	17, 101, 194, 242
TspRI	CASTG	2 cut(s)	372, 392
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	3 cut(s)	263, 305, 539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.