Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001572.1

Orthogroup ID

OG0000948

Physical Location & Seq

Genomic Coordinates Reverse (-)

66313 .. 68901

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001572.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

atggattacatccagtcatacgctcaacatttcgacttgctcaggcacatcaaattcaataccaaagtgtgtggtatagagtatgaaggcccatctgagtatgagatgcaatcatcgagtctctggggcggcaccggtgagcctttcagctcgaaagggaaatggaaagttatggtagaagacaaacaaagcccttcaactgaggtttacttagtagactttgtagtcctctgcattggacgattcagtggtattccaaacattcctaaatttcctccgaacaagggtccagaagaatttcatggtgatgtcatacactcgatggaatatgcttccaaggattatgaaagtgctgctgaatttgtgaaaggaaagcaagtaacagttgttgggtttcagaaatctgcattggacattgcaatggagtgctcaaatgcaaatggggtaaaacatccatgtacagtgttgtacaagacagaacactggaatgttcctgcccgtgtgcctctcgaatacctatacctcaatcgcttctcggagcttttggttcataagcctggtgaaggcctcctactcagtctccttgcaacaattctttcacctctgagatgggcattttcaaaatttgttgaaagctacatagataagaagcttggattattcaagtatggaatggtacctaagcatagtttccttcaagaaatcagttcctgtctgatctcaaccgtgcctgaaaaattctatgaccgagtccaagaaggaagcattttacttaagaaatctcccaaaagcttcagcttttgccgagaaggcattttggttgaaggagaaaactcccctgtaaagacagatttggtcatattggctactggatttagaggtgatgagaagcttaaagacatctttgtgtcaccaacatttcaagactacatagctggatcacctaagtccattttacctctctacagggaatgcatccatggacgaattccacaactagctgtaattggattctctgtgagtatctcaaccttgcacacatcagagatgaggtgcagatggctagcagagctttttgcaggcacattcaaggtaccaagcataaaagaaatggagaaagatgtgaaacaatgggatgagtatgccaagcgatactctggaaaatactaccggagatcatgcatcggagcgcttcacatttggtacaatgaccaattgtgcaaggatatgggatggaatcccaaaaggaagaagggacttcttgctgaactatttgagccttatggcccaacggattatatttcctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

436

Amino Acids

49.64

Weight (kDa)

8.17

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16430 FvH4_2g16450
malus_domestica	MD00G1083300.v1.1 MD00G1083500.v1.1 MD05G1133000.v1.1 MD16G1203500.v1.1 MD16G1203700.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1 Prupe.8G177100_v2.0.a1
pyrus_communis	pycom05g13010 pycom05g13030 pycom05g13040
rosa_chinensis	RchiOBHm_Chr6g0280221 RchiOBHm_Chr6g0280281 RchiOBHm_Chr6g0280291 RchiOBHm_Chr6g0280311 RchiOBHm_Chr6g0280341
rosa_laevigata	RLG00000013067 RLG00000013073 RLG00000013075 RLG00000013076
rosa_multiflora	Rmu_sc0000757.1_g000002 Rmu_sc0001572.1_g000020 Rmu_sc0001572.1_g000034 Rmu_sc0002826.1_g000002 Rmu_sc0002858.1_g000010 Rmu_sc0002858.1_g000031 Rmu_sc0004211.1_g000005 Rmu_sc0010624.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188150 Rroxscaffold_7G00188190 Rroxscaffold_7G00188220 Rroxscaffold_7G00188230 Rroxscaffold_7G00188240 Rroxscaffold_7G00188270 Rroxscaffold_7G00188290
rosa_rugosa	Rorug06G0130900 Rorug06G0131200 Rorug06G0131200 Rorug06G0131200 Rorug06G0131500
rosa_samantha	Rh6AG241200 Rh6AG241800 Rh6AG241900 Rh6AG242100 Rh6AG242200 Rh6AG242700 Rh6AG242900 Rh6BG244800 Rh6BG245400 Rh6BG245500 Rh6BG245700 Rh6CG246700 Rh6CG247000 Rh6DG237500 Rh6DG238000 Rh6DG238300 Rh6DG238600
rosa_wichuraiana	Rw5G027390 Rw6G021000 Rw6G021020 Rw6G021040 Rw6G021070 Rw6G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
Acc65I	GGTACC	2 cut(s)	676, 1093
AccB1I	GGYRCC	3 cut(s)	131, 676, 1093
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	946
AcsI	RAATTY	7 cut(s)	53, 269, 296, 359, 623, 737, 987
AcuI	CTGAAG	1 cut(s)	778
AfaI	GTAC	5 cut(s)	460, 470, 678, 1095, 1205
AfeI	AGCGCT	1 cut(s)	1191
AfiI	CCNNNNNNNGG	2 cut(s)	284, 563
AflII	CTTAAG	1 cut(s)	773
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	9 cut(s)	58, 198, 621, 632, 664, 698, 824, 923, 1090
AjnI	CCWGG	1 cut(s)	556
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	2 cut(s)	125, 584
AlwI	GGATC	1 cut(s)	946
AlwNI	CAGNNNCTG	1 cut(s)	711
Aor51HI	AGCGCT	1 cut(s)	1191
AoxI	GGCC	3 cut(s)	88, 565, 1285
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	7 cut(s)	53, 269, 296, 359, 623, 737, 987
AsiGI	ACCGGT	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	297
Asp718I	GGTACC	2 cut(s)	676, 1093
AspLEI	GCGC	1 cut(s)	1192
AspS9I	GGNCC	3 cut(s)	89, 287, 1286
AsuHPI	GGTGA	7 cut(s)	149, 317, 572, 591, 893, 903, 933
AsuNHI	GCTAGC	1 cut(s)	1063
AvaII	GGWCC	1 cut(s)	287
BanI	GGYRCC	3 cut(s)	131, 676, 1093
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	5 cut(s)	100, 316, 603, 1053, 1227
BciT130I	CCWGG	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	125, 584
BfaI	CTAG	2 cut(s)	998, 1064
BfmI	CTRYAG	1 cut(s)	964
BfoI	RGCGCY	1 cut(s)	1193
BfrI	CTTAAG	1 cut(s)	773
BglI	GCCNNNNNGGC	1 cut(s)	810
BisI	GCNGC	2 cut(s)	130, 354
BlsI	GCNGC	2 cut(s)	131, 355
Bme1390I	CCNGG	1 cut(s)	558
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	3 cut(s)	89, 287, 1286
BmiI	GGNNCC	4 cut(s)	133, 288, 678, 1095
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	3 cut(s)	96, 984, 1191
BmtI	GCTAGC	1 cut(s)	1067
BpiI	GAAGAC	1 cut(s)	186
Bpu10I	CCTNAGC	2 cut(s)	41, 681
BsaJI	CCNNGG	2 cut(s)	336, 979
BsaWI	WCCGGW	2 cut(s)	134, 1170
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 563
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	3 cut(s)	13, 488, 874
Bse3DI	GCAATG	2 cut(s)	414, 426
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	336, 979
BseGI	GGATG	5 cut(s)	9, 451, 975, 1141, 1238
BseLI	CCNNNNNNNGG	2 cut(s)	284, 563
BseMI	GCAATG	2 cut(s)	414, 426
BseMII	CTCAG	5 cut(s)	55, 87, 192, 589, 596
BseNI	ACTGG	3 cut(s)	13, 488, 874
BseXI	GCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	1075
BshFI	GGCC	3 cut(s)	90, 567, 1287
BshNI	GGYRCC	3 cut(s)	131, 676, 1093
BshTI	ACCGGT	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	135, 1171
BslFI	GGGAC	1 cut(s)	1269
BslI	CCNNNNNNNGG	2 cut(s)	284, 563
BsmAI	GTCTC	2 cut(s)	125, 584
BsmFI	GGGAC	1 cut(s)	1269
BsmI	GAATGC	1 cut(s)	977
BsnI	GGCC	3 cut(s)	90, 567, 1287
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp1407I	TGTACA	2 cut(s)	458, 468
Bsp143I	GATC	3 cut(s)	717, 938, 1175
Bsp19I	CCATGG	1 cut(s)	979
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	3 cut(s)	90, 567, 1287
BspCNI	CTCAG	5 cut(s)	54, 88, 193, 588, 597
BspLI	GGNNCC	4 cut(s)	133, 288, 678, 1095
BspOI	GCTAGC	1 cut(s)	1067
BspPI	GGATC	1 cut(s)	946
BspT107I	GGYRCC	3 cut(s)	131, 676, 1093
BspTI	CTTAAG	1 cut(s)	773
BsrDI	GCAATG	2 cut(s)	414, 426
BsrFI	RCCGGY	1 cut(s)	134
BsrGI	TGTACA	2 cut(s)	458, 468
BsrI	ACTGG	3 cut(s)	13, 488, 874
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	336, 979
BssMI	GATC	3 cut(s)	717, 938, 1175
BssT1I	CCWWGG	2 cut(s)	336, 979
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	385, 463, 727
BstAFI	CTTAAG	1 cut(s)	773
BstAUI	TGTACA	2 cut(s)	458, 468
BstC8I	GCNNGC	2 cut(s)	1065, 1081
BstDEI	CTNAG	8 cut(s)	41, 96, 201, 211, 575, 605, 681, 945
BstDSI	CCRYGG	1 cut(s)	979
BstENI	CCTNNNNNAGG	1 cut(s)	561
BstF5I	GGATG	5 cut(s)	9, 451, 975, 1141, 1238
BstH2I	RGCGCY	1 cut(s)	1193
BstHHI	GCGC	1 cut(s)	1192
BstKTI	GATC	3 cut(s)	720, 941, 1178
BstMAI	GTCTC	2 cut(s)	125, 584
BstMBI	GATC	3 cut(s)	717, 938, 1175
BstMWI	GCNNNNNNNGC	2 cut(s)	810, 1069
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	1 cut(s)	964
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	186
BsuRI	GGCC	3 cut(s)	90, 567, 1287
BtgI	CCRYGG	1 cut(s)	979
BtsCI	GGATG	5 cut(s)	9, 451, 975, 1141, 1238
BtsIMutI	CAGTG	3 cut(s)	253, 468, 481
Cac8I	GCNNGC	2 cut(s)	1065, 1081
CaiI	CAGNNNCTG	1 cut(s)	711
CfoI	GCGC	1 cut(s)	1192
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	89, 287, 1286
Csp6I	GTAC	5 cut(s)	459, 469, 677, 1094, 1204
CspAI	ACCGGT	1 cut(s)	134
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	4 cut(s)	302, 456, 980, 1179
CviQI	GTAC	5 cut(s)	459, 469, 677, 1094, 1204
DdeI	CTNAG	8 cut(s)	41, 96, 201, 211, 575, 605, 681, 945
DpnI	GATC	3 cut(s)	719, 940, 1177
DpnII	GATC	3 cut(s)	717, 938, 1175
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eco130I	CCWWGG	2 cut(s)	336, 979
Eco147I	AGGCCT	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	287
Eco47III	AGCGCT	1 cut(s)	1191
Eco57I	CTGAAG	1 cut(s)	778
EcoNI	CCTNNNNNAGG	1 cut(s)	561
EcoRI	GAATTC	1 cut(s)	987
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	2 cut(s)	336, 979
EcoT22I	ATGCAT	2 cut(s)	977, 1184
ErhI	CCWWGG	2 cut(s)	336, 979
FaeI	CATG	4 cut(s)	305, 459, 983, 1182
FaqI	GGGAC	1 cut(s)	1269
FatI	CATG	4 cut(s)	301, 455, 979, 1178
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	130, 354
FokI	GGATG	4 cut(s)	438, 962, 1148, 1245
Fsp4HI	GCNGC	2 cut(s)	130, 354
FspBI	CTAG	2 cut(s)	998, 1064
GlaI	GCGC	1 cut(s)	1191
GluI	GCNGC	2 cut(s)	130, 354
HaeII	RGCGCY	1 cut(s)	1193
HaeIII	GGCC	3 cut(s)	90, 567, 1287
HapII	CCGG	2 cut(s)	135, 1171
HhaI	GCGC	1 cut(s)	1192
Hin1II	CATG	4 cut(s)	305, 459, 983, 1182
Hin6I	GCGC	1 cut(s)	1190
HinP1I	GCGC	1 cut(s)	1190
HindIII	AAGCTT	3 cut(s)	650, 790, 890
HinfI	GANTC	5 cut(s)	118, 243, 750, 1011, 1237
HpaII	CCGG	2 cut(s)	135, 1171
HphI	GGTGA	7 cut(s)	149, 317, 572, 591, 893, 903, 933
Hpy166II	GTNNAC	2 cut(s)	208, 217
Hpy188I	TCNGA	8 cut(s)	97, 279, 399, 538, 606, 717, 1045, 1187
Hpy188III	TCNNGA	5 cut(s)	290, 509, 698, 923, 1158
Hpy8I	GTNNAC	2 cut(s)	208, 217
HpyAV	CCTTC	8 cut(s)	80, 204, 557, 704, 752, 803, 818, 1246
HpyCH4III	ACNGT	3 cut(s)	385, 463, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	810, 1069
HpyF3I	CTNAG	8 cut(s)	41, 96, 201, 211, 575, 605, 681, 945
Hsp92II	CATG	4 cut(s)	305, 459, 983, 1182
HspAI	GCGC	1 cut(s)	1190
KpnI	GGTACC	2 cut(s)	680, 1097
Kzo9I	GATC	3 cut(s)	717, 938, 1175
LmnI	GCTCC	2 cut(s)	538, 1187
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	3 cut(s)	96, 984, 1191
MaeI	CTAG	2 cut(s)	998, 1064
MaeIII	GTNAC	2 cut(s)	379, 909
MalI	GATC	3 cut(s)	719, 940, 1177
MboI	GATC	3 cut(s)	717, 938, 1175
MboII	GAAGA	3 cut(s)	191, 305, 1261
MfeI	CAATTG	1 cut(s)	1214
MhlI	GDGCHC	1 cut(s)	431
MlyI	GAGTC	2 cut(s)	127, 759
Mph1103I	ATGCAT	2 cut(s)	977, 1184
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	3 cut(s)	774, 894, 1309
MslI	CAYNNNNRTG	4 cut(s)	306, 419, 486, 905
MspCI	CTTAAG	1 cut(s)	773
MspI	CCGG	2 cut(s)	135, 1171
MspR9I	CCNGG	1 cut(s)	558
MunI	CAATTG	1 cut(s)	1214
Mva1269I	GAATGC	1 cut(s)	977
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	2 cut(s)	810, 1069
NcoI	CCATGG	1 cut(s)	979
NdeII	GATC	3 cut(s)	717, 938, 1175
NheI	GCTAGC	1 cut(s)	1063
NlaIII	CATG	4 cut(s)	305, 459, 983, 1182
NlaIV	GGNNCC	4 cut(s)	133, 288, 678, 1095
NmeAIII	GCCGAG	1 cut(s)	830
NmuCI	GTSAC	1 cut(s)	909
NsiI	ATGCAT	2 cut(s)	977, 1184
PceI	AGGCCT	1 cut(s)	567
PctI	GAATGC	1 cut(s)	977
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	243, 1011, 1237
PflFI	GACNNNGTC	1 cut(s)	749
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	131, 355
PleI	GAGTC	2 cut(s)	126, 758
PpsI	GAGTC	2 cut(s)	126, 758
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	4 cut(s)	133, 288, 678, 1095
PspPI	GGNCC	3 cut(s)	89, 287, 1286
PstNI	CAGNNNCTG	1 cut(s)	711
PsyI	GACNNNGTC	1 cut(s)	749
RsaI	GTAC	5 cut(s)	460, 470, 678, 1095, 1205
RsaNI	GTAC	5 cut(s)	459, 469, 677, 1094, 1204
RseI	CAYNNNNRTG	4 cut(s)	306, 419, 486, 905
SaqAI	TTAA	3 cut(s)	774, 894, 1309
SatI	GCNGC	2 cut(s)	130, 354
Sau3AI	GATC	3 cut(s)	717, 938, 1175
Sau96I	GGNCC	3 cut(s)	89, 287, 1286
SchI	GAGTC	2 cut(s)	127, 759
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	431
SfaNI	GCATC	3 cut(s)	96, 984, 1191
SfcI	CTRYAG	1 cut(s)	964
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	4 cut(s)	306, 419, 486, 905
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	2 cut(s)	998, 1064
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	2 cut(s)	336, 979
TaaI	ACNGT	3 cut(s)	385, 463, 727
TaqI	TCGA	5 cut(s)	33, 116, 152, 320, 510
TaqII	GACCGA	1 cut(s)	762
TatI	WGTACW	2 cut(s)	458, 468
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	243, 1011, 1237
Tru1I	TTAA	3 cut(s)	774, 894, 1309
Tru9I	TTAA	3 cut(s)	774, 894, 1309
TscAI	CASTG	3 cut(s)	253, 468, 488
TseFI	GTSAC	1 cut(s)	909
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	909
TspDTI	ATGAA	4 cut(s)	99, 290, 360, 539
TspGWI	ACGGA	1 cut(s)	1307
TspRI	CASTG	3 cut(s)	253, 468, 488
Tth111I	GACNNNGTC	1 cut(s)	749
Vha464I	CTTAAG	1 cut(s)	773
VpaK11BI	GGWCC	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	561
XapI	RAATTY	7 cut(s)	53, 269, 296, 359, 623, 737, 987
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	2 cut(s)	998, 1064
Zsp2I	ATGCAT	2 cut(s)	977, 1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.