Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004211.1

Orthogroup ID

OG0000948

Physical Location & Seq

Genomic Coordinates Reverse (-)

13709 .. 15323

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004211.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggaatatgcttccaaggattatgaaaacgctgctgaatttgtgaaaggaaagcaagtaacagttgttgggtttcagaaatctgcattggacattgcaatggagtgctcaaatgcaaatgaacactggaatgttcctgactatctcccatggggtgtgcctctggggtacctatacctcaatcgcttctcggagcttttggttcataagcccggtgaaggcctcctactcagtctccttgcaacaattctttcacctctgagatgggcattttcaaaatttgttgaaacctacatagataagaagcttgggttatccaagtatggaatggtaccaaagcatagtttccttcaacaaatcagttcctgtctgctctcaaccgtgcctgaaaaattctatgaccgagtccaagaaggaagcattttacttaagaaatctccatgcttcagcttttgccgagaaggcattttggttgaaggagaaaactcccctgtaaagacagatttggtcatattggctactggatttagaggtgatgagaagcttaaagacatctttgcgtcaccaacatttcaagactacatagctggatcacctgagtccattttacctctctacagggaatgcatccatggacgaattccacaactagctgtaattggattctccgtgagtatctcaaacttgtacatatcagagatgaggtgcagatggctagcagagctttttggaggcacattcaaggtaccaagcataaaagaaatggagaaagatgtgaaacaatgggatgagtatgccaagcgatactccagaaaatactacaggagatcatgcatcggagcgcctcacatatggtacaatgaccaattgtgcaaggatatgggatggaatcccaaaaggaagaagggacttcttgctgaactatttgagccttatggcccaacggattatatttcctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

320

Amino Acids

36.57

Weight (kDa)

8.27

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16430 FvH4_2g16450
malus_domestica	MD00G1083300.v1.1 MD00G1083500.v1.1 MD05G1133000.v1.1 MD16G1203500.v1.1 MD16G1203700.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1 Prupe.8G177100_v2.0.a1
pyrus_communis	pycom05g13010 pycom05g13030 pycom05g13040
rosa_chinensis	RchiOBHm_Chr6g0280221 RchiOBHm_Chr6g0280281 RchiOBHm_Chr6g0280291 RchiOBHm_Chr6g0280311 RchiOBHm_Chr6g0280341
rosa_laevigata	RLG00000013067 RLG00000013073 RLG00000013075 RLG00000013076
rosa_multiflora	Rmu_sc0000757.1_g000002 Rmu_sc0001572.1_g000020 Rmu_sc0001572.1_g000034 Rmu_sc0002826.1_g000002 Rmu_sc0002858.1_g000010 Rmu_sc0002858.1_g000031 Rmu_sc0004211.1_g000005 Rmu_sc0010624.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188150 Rroxscaffold_7G00188190 Rroxscaffold_7G00188220 Rroxscaffold_7G00188230 Rroxscaffold_7G00188240 Rroxscaffold_7G00188270 Rroxscaffold_7G00188290
rosa_rugosa	Rorug06G0130900 Rorug06G0131200 Rorug06G0131200 Rorug06G0131200 Rorug06G0131500
rosa_samantha	Rh6AG241200 Rh6AG241800 Rh6AG241900 Rh6AG242100 Rh6AG242200 Rh6AG242700 Rh6AG242900 Rh6BG244800 Rh6BG245400 Rh6BG245500 Rh6BG245700 Rh6CG246700 Rh6CG247000 Rh6DG237500 Rh6DG238000 Rh6DG238300 Rh6DG238600
rosa_wichuraiana	Rw5G027390 Rw6G021000 Rw6G021020 Rw6G021040 Rw6G021070 Rw6G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	168, 331, 745
AccB1I	GGYRCC	3 cut(s)	168, 331, 745
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	4 cut(s)	38, 278, 392, 639
AcuI	CTGAAG	1 cut(s)	430
AfaI	GTAC	5 cut(s)	170, 333, 689, 747, 857
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	6 cut(s)	276, 287, 353, 476, 575, 742
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	7 cut(s)	196, 307, 450, 544, 587, 653, 724
AluI	AGCT	7 cut(s)	196, 307, 450, 544, 587, 653, 724
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	598
AlwNI	CAGNNNCTG	1 cut(s)	366
AoxI	GGCC	2 cut(s)	220, 937
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	4 cut(s)	38, 278, 392, 639
Asp718I	GGTACC	3 cut(s)	168, 331, 745
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	1 cut(s)	938
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	5 cut(s)	227, 246, 545, 555, 585
AsuNHI	GCTAGC	1 cut(s)	715
BanI	GGYRCC	3 cut(s)	168, 331, 745
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	3 cut(s)	258, 705, 879
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	650, 716
BfmI	CTRYAG	2 cut(s)	616, 820
BfoI	RGCGCY	1 cut(s)	845
BfrI	CTTAAG	1 cut(s)	428
BglI	GCCNNNNNGGC	1 cut(s)	462
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	938
BmiI	GGNNCC	3 cut(s)	170, 333, 747
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	636, 843
BmtI	GCTAGC	1 cut(s)	719
BpmI	CTGGAG	1 cut(s)	793
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	15, 149, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	131, 526
Bse3DI	GCAATG	2 cut(s)	93, 105
BseDI	CCNNGG	3 cut(s)	15, 149, 631
BseGI	GGATG	3 cut(s)	627, 793, 890
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	2 cut(s)	93, 105
BseMII	CTCAG	3 cut(s)	244, 251, 588
BseNI	ACTGG	2 cut(s)	131, 526
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	727
BshFI	GGCC	2 cut(s)	222, 939
BshNI	GGYRCC	3 cut(s)	168, 331, 745
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	921
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	921
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	222, 939
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	2 cut(s)	590, 827
Bsp19I	CCATGG	2 cut(s)	149, 631
BspANI	GGCC	2 cut(s)	222, 939
BspCNI	CTCAG	3 cut(s)	243, 252, 589
BspLI	GGNNCC	3 cut(s)	170, 333, 747
BspOI	GCTAGC	1 cut(s)	719
BspPI	GGATC	1 cut(s)	598
BspT107I	GGYRCC	3 cut(s)	168, 331, 745
BspTI	CTTAAG	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	93, 105
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	2 cut(s)	131, 526
BssECI	CCNNGG	3 cut(s)	15, 149, 631
BssMI	GATC	2 cut(s)	590, 827
BssT1I	CCWWGG	3 cut(s)	15, 149, 631
Bst4CI	ACNGT	2 cut(s)	64, 382
BstAFI	CTTAAG	1 cut(s)	428
BstAUI	TGTACA	1 cut(s)	687
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	3 cut(s)	230, 260, 597
BstDSI	CCRYGG	2 cut(s)	149, 631
BstF5I	GGATG	3 cut(s)	627, 793, 890
BstH2I	RGCGCY	1 cut(s)	845
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	2 cut(s)	593, 830
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	590, 827
BstMWI	GCNNNNNNNGC	2 cut(s)	462, 721
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	2 cut(s)	616, 820
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	222, 939
BtgI	CCRYGG	2 cut(s)	149, 631
BtsCI	GGATG	3 cut(s)	627, 793, 890
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	717
CaiI	CAGNNNCTG	1 cut(s)	366
CfoI	GCGC	1 cut(s)	844
Cfr13I	GGNCC	1 cut(s)	938
CseI	GACGC	1 cut(s)	549
Csp6I	GTAC	5 cut(s)	169, 332, 688, 746, 856
CviAII	CATG	4 cut(s)	150, 441, 632, 831
CviQI	GTAC	5 cut(s)	169, 332, 688, 746, 856
DdeI	CTNAG	3 cut(s)	230, 260, 597
DpnI	GATC	2 cut(s)	592, 829
DpnII	GATC	2 cut(s)	590, 827
Eco130I	CCWWGG	3 cut(s)	15, 149, 631
Eco147I	AGGCCT	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	639
EcoT14I	CCWWGG	3 cut(s)	15, 149, 631
EcoT22I	ATGCAT	2 cut(s)	629, 836
ErhI	CCWWGG	3 cut(s)	15, 149, 631
FaeI	CATG	4 cut(s)	153, 444, 635, 834
FaqI	GGGAC	1 cut(s)	921
FatI	CATG	4 cut(s)	149, 440, 631, 830
FauNDI	CATATG	1 cut(s)	851
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	614, 800, 897
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	650, 716
GlaI	GCGC	1 cut(s)	843
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	793
HaeII	RGCGCY	1 cut(s)	845
HaeIII	GGCC	2 cut(s)	222, 939
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	549
HhaI	GCGC	1 cut(s)	844
Hin1II	CATG	4 cut(s)	153, 444, 635, 834
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HindIII	AAGCTT	2 cut(s)	305, 542
HinfI	GANTC	4 cut(s)	405, 599, 663, 889
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	5 cut(s)	227, 246, 545, 555, 585
Hpy188I	TCNGA	5 cut(s)	78, 193, 261, 697, 839
Hpy188III	TCNNGA	3 cut(s)	137, 575, 810
HpyAV	CCTTC	6 cut(s)	212, 359, 407, 455, 470, 898
HpyCH4III	ACNGT	2 cut(s)	64, 382
HpyCH4V	TGCA	8 cut(s)	86, 98, 116, 242, 627, 708, 834, 873
HpyF10VI	GCNNNNNNNGC	2 cut(s)	462, 721
HpyF3I	CTNAG	3 cut(s)	230, 260, 597
Hsp92II	CATG	4 cut(s)	153, 444, 635, 834
HspAI	GCGC	1 cut(s)	842
KpnI	GGTACC	3 cut(s)	172, 335, 749
Kzo9I	GATC	2 cut(s)	590, 827
LmnI	GCTCC	2 cut(s)	193, 839
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	2 cut(s)	636, 843
MaeI	CTAG	2 cut(s)	650, 716
MaeIII	GTNAC	2 cut(s)	58, 561
MalI	GATC	2 cut(s)	592, 829
MboI	GATC	2 cut(s)	590, 827
MboII	GAAGA	1 cut(s)	913
MfeI	CAATTG	1 cut(s)	866
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	7 cut(s)	38, 246, 278, 392, 639, 657, 866
MlyI	GAGTC	2 cut(s)	414, 608
MnlI	CCTC	9 cut(s)	171, 188, 233, 267, 524, 621, 696, 725, 855
Mph1103I	ATGCAT	2 cut(s)	629, 836
MseI	TTAA	3 cut(s)	429, 546, 961
MslI	CAYNNNNRTG	2 cut(s)	98, 129
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	866
Mva1269I	GAATGC	1 cut(s)	629
MwoI	GCNNNNNNNGC	2 cut(s)	462, 721
NciI	CCSGG	1 cut(s)	213
NcoI	CCATGG	2 cut(s)	149, 631
NdeI	CATATG	1 cut(s)	851
NdeII	GATC	2 cut(s)	590, 827
NheI	GCTAGC	1 cut(s)	715
NlaIII	CATG	4 cut(s)	153, 444, 635, 834
NlaIV	GGNNCC	3 cut(s)	170, 333, 747
NmeAIII	GCCGAG	1 cut(s)	482
NmuCI	GTSAC	1 cut(s)	561
NsiI	ATGCAT	2 cut(s)	629, 836
PceI	AGGCCT	1 cut(s)	222
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	2 cut(s)	663, 889
PflFI	GACNNNGTC	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	2 cut(s)	413, 607
PpsI	GAGTC	2 cut(s)	413, 607
PspN4I	GGNNCC	3 cut(s)	170, 333, 747
PspPI	GGNCC	1 cut(s)	938
PstNI	CAGNNNCTG	1 cut(s)	366
PsyI	GACNNNGTC	1 cut(s)	404
RsaI	GTAC	5 cut(s)	170, 333, 689, 747, 857
RsaNI	GTAC	5 cut(s)	169, 332, 688, 746, 856
RseI	CAYNNNNRTG	2 cut(s)	98, 129
SaqAI	TTAA	3 cut(s)	429, 546, 961
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	590, 827
Sau96I	GGNCC	1 cut(s)	938
SchI	GAGTC	2 cut(s)	414, 608
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	110
SfaNI	GCATC	2 cut(s)	636, 843
SfcI	CTRYAG	2 cut(s)	616, 820
SmiMI	CAYNNNNRTG	2 cut(s)	98, 129
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	7 cut(s)	38, 246, 278, 392, 639, 657, 866
SseBI	AGGCCT	1 cut(s)	222
SspMI	CTAG	2 cut(s)	650, 716
StuI	AGGCCT	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	3 cut(s)	15, 149, 631
TaaI	ACNGT	2 cut(s)	64, 382
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	7 cut(s)	38, 246, 278, 392, 639, 657, 866
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	2 cut(s)	663, 889
Tru1I	TTAA	3 cut(s)	429, 546, 961
Tru9I	TTAA	3 cut(s)	429, 546, 961
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	3 cut(s)	39, 135, 194
TspGWI	ACGGA	2 cut(s)	658, 959
TspRI	CASTG	1 cut(s)	131
Tth111I	GACNNNGTC	1 cut(s)	404
Vha464I	CTTAAG	1 cut(s)	428
XapI	RAATTY	4 cut(s)	38, 278, 392, 639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XspI	CTAG	2 cut(s)	650, 716
Zsp2I	ATGCAT	2 cut(s)	629, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.