Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000948

Physical Location & Seq

Genomic Coordinates Forward (+)

25831700 .. 25834425

Gene Structure 2726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013075

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAGGACATCCGCGCCTTCCATTGACAACAGCAACAATTTGGAACCTTCTAGACATGATTTTCCGTGGCCATCTTCAGTGAAAGAGGACAATCCTAACCAGAATCAGGTATTAGAATACACCCAGTCGTATGCTCGCCATTTCGACTTGCTCAAGAACATCAAATTCAATACCAAAGTCTGTGGTATAGAGTATGAAGGACCATCAGAGGAGGAGATGCGATCTTGGAGTCTTTGGGGTGGCACTGGAGAGCCATTCAGCTCAGAAGGGAAATGGAAAGTTGTAGTAGAAGAGAAGCAGAGCCTTTCAACCAAGACTTATCTAGTAGACTTTGTGATCCTCTGCGTTGGACGATTCAGCGATGTTCCAGACATTCCTGAATTCACTCCGAACAAGGGAACGGAAGCATTCCATGGAAAGGTTATACACTCGATGGAATACGCCGATATGGATTATGAAAGCGCTTCTAAATTCGTGACCAGAAAGCAAGTAACAATTGTCGGGTCTCAGAAATTTGCAATGGACATTGCAATAGAATGTTCGAATGCTAATGGGATAGAAAATCCATGCACATTGTTGTACAGAACAGAACACTGGAATATGCCAGATCTCCTTCCATGGGGTGTGCCTCTTGCATTACTCTACTTCAATCGCTTCTCGGAGCTCTTGGTTCATAAGCCTGGCGAAGGATTCCTGCTTAGTCTCCTTGCAACACTGCTTTCACCTCTGAGATGGTCGTTTTCAAAATTTGTGGAAACATATGCAGATAACAAGCTAGGATTATACAAGTATGGGATGGTACCTAAGCAGACATTCCTTCAAGATATTAGTTCTGGTTTGGTAGCATTAGTGCCTGAAAAGTTTTATGACCGAGTGCAAGAGGGAAGCATCATACTCAAGAAATCTCCGAGAAACTTGGGATTTTGCGAAGAAGGAATTTTGGTTGAAGGGGAAGTCTCGCCTCTGAAGACGGATTTGGTCATATTGGCTACAGGGTTTACAGGTGAAAAGAAGCTCGAAGACATCTTTGTGTCTCCCACCTTTCAGAATTACATAACGGGACCGCCTGAGGCAATATTGCCCCTCTACAGGTTAACTAGCTCTTATTTTTCAATAGATATTGTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

377

Amino Acids

42.54

Weight (kDa)

5.13

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	20 - 334	7e-20	Flavin-binding monooxygenase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16430 FvH4_2g16450
malus_domestica	MD00G1083300.v1.1 MD00G1083500.v1.1 MD05G1133000.v1.1 MD16G1203500.v1.1 MD16G1203700.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1 Prupe.8G177100_v2.0.a1
pyrus_communis	pycom05g13010 pycom05g13030 pycom05g13040
rosa_chinensis	RchiOBHm_Chr6g0280221 RchiOBHm_Chr6g0280281 RchiOBHm_Chr6g0280291 RchiOBHm_Chr6g0280311 RchiOBHm_Chr6g0280341
rosa_laevigata	RLG00000013067 RLG00000013073 RLG00000013075 RLG00000013076
rosa_multiflora	Rmu_sc0000757.1_g000002 Rmu_sc0001572.1_g000020 Rmu_sc0001572.1_g000034 Rmu_sc0002826.1_g000002 Rmu_sc0002858.1_g000010 Rmu_sc0002858.1_g000031 Rmu_sc0004211.1_g000005 Rmu_sc0010624.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188150 Rroxscaffold_7G00188190 Rroxscaffold_7G00188220 Rroxscaffold_7G00188230 Rroxscaffold_7G00188240 Rroxscaffold_7G00188270 Rroxscaffold_7G00188290
rosa_rugosa	Rorug06G0130900 Rorug06G0131200 Rorug06G0131200 Rorug06G0131200 Rorug06G0131500
rosa_samantha	Rh6AG241200 Rh6AG241800 Rh6AG241900 Rh6AG242100 Rh6AG242200 Rh6AG242700 Rh6AG242900 Rh6BG244800 Rh6BG245400 Rh6BG245500 Rh6BG245700 Rh6CG246700 Rh6CG247000 Rh6DG237500 Rh6DG238000 Rh6DG238300 Rh6DG238600
rosa_wichuraiana	Rw5G027390 Rw6G021000 Rw6G021020 Rw6G021040 Rw6G021070 Rw6G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	799
AccB1I	GGYRCC	1 cut(s)	799
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	12, 1064
AclWI	GGATC	1 cut(s)	331
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	6 cut(s)	164, 380, 470, 512, 746, 936
AcuI	CTGAAG	2 cut(s)	60, 986
AfaI	GTAC	2 cut(s)	581, 801
AfeI	AGCGCT	1 cut(s)	463
AfiI	CCNNNNNNNGG	6 cut(s)	106, 395, 418, 619, 686, 1089
AgsI	TTSAA	7 cut(s)	169, 309, 649, 744, 821, 947, 1113
AjnI	CCWGG	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AluBI	AGCT	5 cut(s)	261, 664, 775, 1015, 1101
AluI	AGCT	5 cut(s)	261, 664, 775, 1015, 1101
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	4 cut(s)	510, 707, 961, 1038
AlwI	GGATC	1 cut(s)	331
Aor51HI	AGCGCT	1 cut(s)	463
AoxI	GGCC	1 cut(s)	68
ApoI	RAATTY	6 cut(s)	164, 380, 470, 512, 746, 936
Asp718I	GGTACC	1 cut(s)	799
AspLEI	GCGC	2 cut(s)	16, 464
AspS9I	GGNCC	2 cut(s)	200, 1061
AsuHPI	GGTGA	2 cut(s)	714, 1016
AsuII	TTCGAA	1 cut(s)	542
AvaII	GGWCC	2 cut(s)	200, 1061
AxyI	CCTNAGG	1 cut(s)	1068
BalI	TGGCCA	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	666
BbsI	GAAGAC	2 cut(s)	974, 1026
Bbv12I	GWGCWC	1 cut(s)	666
BccI	CCATC	5 cut(s)	79, 211, 427, 726, 790
BciT130I	CCWGG	1 cut(s)	681
BcoDI	GTCTC	4 cut(s)	510, 707, 961, 1038
BfaI	CTAG	4 cut(s)	51, 323, 776, 1098
BfmI	CTRYAG	2 cut(s)	990, 1087
BfoI	RGCGCY	1 cut(s)	465
BglII	AGATCT	1 cut(s)	607
Bme1390I	CCNGG	1 cut(s)	681
Bme18I	GGWCC	2 cut(s)	200, 1061
BmgT120I	GGNCC	2 cut(s)	200, 1061
BmiI	GGNNCC	3 cut(s)	45, 801, 1062
BmrFI	CCNGG	1 cut(s)	681
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	207, 897
BmuI	ACTGGG	1 cut(s)	118
BpiI	GAAGAC	2 cut(s)	974, 1026
BpmI	CTGGAG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	804
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	137, 881
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	65, 412, 617
Bsc4I	CCNNNNNNNGG	6 cut(s)	106, 395, 418, 619, 686, 1089
Bse1I	ACTGG	3 cut(s)	124, 250, 599
Bse21I	CCTNAGG	1 cut(s)	1068
Bse3DI	GCAATG	2 cut(s)	525, 525
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	3 cut(s)	65, 412, 617
BseGI	GGATG	2 cut(s)	8, 801
BseLI	CCNNNNNNNGG	6 cut(s)	106, 395, 418, 619, 686, 1089
BseMI	GCAATG	2 cut(s)	525, 525
BseMII	CTCAG	4 cut(s)	276, 521, 719, 1059
BseNI	ACTGG	3 cut(s)	124, 250, 599
BseRI	GAGGAG	2 cut(s)	224, 227
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	799
BsiHKAI	GWGCWC	1 cut(s)	666
BslFI	GGGAC	1 cut(s)	1074
BslI	CCNNNNNNNGG	6 cut(s)	106, 395, 418, 619, 686, 1089
BsmAI	GTCTC	4 cut(s)	510, 707, 961, 1038
BsmFI	GGGAC	1 cut(s)	1074
BsmI	GAATGC	2 cut(s)	407, 550
BsnI	GGCC	1 cut(s)	70
Bso31I	GGTCTC	1 cut(s)	510
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	221, 336, 607
Bsp19I	CCATGG	2 cut(s)	412, 617
BspACI	CCGC	2 cut(s)	12, 1064
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	4 cut(s)	275, 520, 720, 1060
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	3 cut(s)	45, 801, 1062
BspPI	GGATC	1 cut(s)	331
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	799
BspTNI	GGTCTC	1 cut(s)	510
BsrDI	GCAATG	2 cut(s)	525, 525
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	124, 250, 599
BssECI	CCNNGG	3 cut(s)	65, 412, 617
BssMI	GATC	3 cut(s)	221, 336, 607
BssT1I	CCWWGG	2 cut(s)	412, 617
Bst2UI	CCWGG	1 cut(s)	681
Bst6I	CTCTTC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	579
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	6 cut(s)	262, 507, 698, 728, 804, 1068
BstDSI	CCRYGG	3 cut(s)	65, 412, 617
BstENI	CCTNNNNNAGG	1 cut(s)	684
BstF5I	GGATG	2 cut(s)	8, 801
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	2 cut(s)	16, 464
BstKTI	GATC	3 cut(s)	224, 339, 610
BstMAI	GTCTC	4 cut(s)	510, 707, 961, 1038
BstMBI	GATC	3 cut(s)	221, 336, 607
BstNI	CCWGG	1 cut(s)	681
BstSCI	CCNGG	1 cut(s)	679
BstSFI	CTRYAG	2 cut(s)	990, 1087
BstUI	CGCG	1 cut(s)	14
BstV2I	GAAGAC	2 cut(s)	974, 1026
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu36I	CCTNAGG	1 cut(s)	1068
BsuRI	GGCC	1 cut(s)	70
BtgI	CCRYGG	3 cut(s)	65, 412, 617
BtgZI	GCGATG	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	8, 801
BtsI	GCAGTG	1 cut(s)	713
BtsIMutI	CAGTG	4 cut(s)	84, 243, 592, 713
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	2 cut(s)	16, 464
Cfr13I	GGNCC	2 cut(s)	200, 1061
Csp6I	GTAC	2 cut(s)	580, 800
CspCI	CAANNNNNGTGG	4 cut(s)	163, 198, 732, 767
CviAII	CATG	4 cut(s)	56, 413, 567, 618
CviQI	GTAC	2 cut(s)	580, 800
DdeI	CTNAG	6 cut(s)	262, 507, 698, 728, 804, 1068
DpnI	GATC	3 cut(s)	223, 338, 609
DpnII	GATC	3 cut(s)	221, 336, 607
EaeI	YGGCCR	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	2 cut(s)	412, 617
Eco24I	GRGCYC	1 cut(s)	666
Eco31I	GGTCTC	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	200, 1061
Eco47III	AGCGCT	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	2 cut(s)	60, 986
Eco81I	CCTNAGG	1 cut(s)	1068
EcoICRI	GAGCTC	1 cut(s)	664
EcoNI	CCTNNNNNAGG	1 cut(s)	684
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	2 cut(s)	412, 617
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	2 cut(s)	412, 617
FaeI	CATG	4 cut(s)	59, 416, 570, 621
FaqI	GGGAC	1 cut(s)	1074
FatI	CATG	4 cut(s)	55, 412, 566, 617
FauNDI	CATATG	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	327
FokI	GGATG	1 cut(s)	808
FriOI	GRGCYC	1 cut(s)	666
FspBI	CTAG	4 cut(s)	51, 323, 776, 1098
GlaI	GCGC	2 cut(s)	15, 463
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	70
HhaI	GCGC	2 cut(s)	16, 464
Hin1II	CATG	4 cut(s)	59, 416, 570, 621
Hin6I	GCGC	2 cut(s)	14, 462
HinP1I	GCGC	2 cut(s)	14, 462
HincII	GTYRAC	1 cut(s)	1095
HindII	GTYRAC	1 cut(s)	1095
HinfI	GANTC	4 cut(s)	103, 229, 354, 690
HpaI	GTTAAC	1 cut(s)	1095
HphI	GGTGA	2 cut(s)	714, 1016
Hpy166II	GTNNAC	3 cut(s)	328, 999, 1095
Hpy188I	TCNGA	9 cut(s)	208, 265, 390, 510, 661, 729, 909, 966, 1047
Hpy188III	TCNNGA	7 cut(s)	51, 154, 368, 377, 475, 821, 898
Hpy8I	GTNNAC	3 cut(s)	328, 999, 1095
HpyAV	CCTTC	9 cut(s)	27, 57, 191, 260, 623, 680, 827, 926, 941
HpyCH4V	TGCA	7 cut(s)	518, 530, 570, 635, 710, 764, 877
HpyF3I	CTNAG	6 cut(s)	262, 507, 698, 728, 804, 1068
Hsp92II	CATG	4 cut(s)	59, 416, 570, 621
HspAI	GCGC	2 cut(s)	14, 462
KpnI	GGTACC	1 cut(s)	803
KspAI	GTTAAC	1 cut(s)	1095
Kzo9I	GATC	3 cut(s)	221, 336, 607
LmnI	GCTCC	1 cut(s)	661
LweI	GCATC	2 cut(s)	207, 897
MaeI	CTAG	4 cut(s)	51, 323, 776, 1098
MaeIII	GTNAC	2 cut(s)	475, 490
MalI	GATC	3 cut(s)	223, 338, 609
MboI	GATC	3 cut(s)	221, 336, 607
MboII	GAAGA	5 cut(s)	66, 302, 941, 979, 1031
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	666
MlsI	TGGCCA	1 cut(s)	70
MluCI	AATT	9 cut(s)	37, 164, 380, 470, 495, 512, 746, 936, 1048
MluNI	TGGCCA	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	328
Mox20I	TGGCCA	1 cut(s)	70
MscI	TGGCCA	1 cut(s)	70
MseI	TTAA	1 cut(s)	1094
MslI	CAYNNNNRTG	1 cut(s)	1028
Msp20I	TGGCCA	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	681
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	2 cut(s)	407, 550
MvaI	CCWGG	1 cut(s)	681
MvnI	CGCG	1 cut(s)	14
NcoI	CCATGG	2 cut(s)	412, 617
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	3 cut(s)	221, 336, 607
NlaIII	CATG	4 cut(s)	59, 416, 570, 621
NlaIV	GGNNCC	3 cut(s)	45, 801, 1062
NmuCI	GTSAC	1 cut(s)	475
NspV	TTCGAA	1 cut(s)	542
PctI	GAATGC	2 cut(s)	407, 550
PfeI	GAWTC	3 cut(s)	103, 354, 690
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	3 cut(s)	45, 801, 1062
PspPI	GGNCC	2 cut(s)	200, 1061
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	2 cut(s)	581, 801
RsaNI	GTAC	2 cut(s)	580, 800
RseI	CAYNNNNRTG	1 cut(s)	1028
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	1 cut(s)	1094
Sau3AI	GATC	3 cut(s)	221, 336, 607
Sau96I	GGNCC	2 cut(s)	200, 1061
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	681
SduI	GDGCHC	1 cut(s)	666
SfaNI	GCATC	2 cut(s)	207, 897
SfcI	CTRYAG	2 cut(s)	990, 1087
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	2 cut(s)	200, 1061
SmiMI	CAYNNNNRTG	1 cut(s)	1028
SmlI	CTYRAG	2 cut(s)	152, 896
SmoI	CTYRAG	2 cut(s)	152, 896
Sse9I	AATT	9 cut(s)	37, 164, 380, 470, 495, 512, 746, 936, 1048
SsiI	CCGC	2 cut(s)	12, 1064
SspI	AATATT	1 cut(s)	1077
SspMI	CTAG	4 cut(s)	51, 323, 776, 1098
SstI	GAGCTC	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	679
StyI	CCWWGG	2 cut(s)	412, 617
TaqI	TCGA	4 cut(s)	144, 431, 542, 1017
TaqII	GACCGA	1 cut(s)	885
TasI	AATT	9 cut(s)	37, 164, 380, 470, 495, 512, 746, 936, 1048
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	3 cut(s)	103, 354, 690
Tru1I	TTAA	1 cut(s)	1094
Tru9I	TTAA	1 cut(s)	1094
TscAI	CASTG	4 cut(s)	84, 250, 599, 720
TseFI	GTSAC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	3 cut(s)	210, 471, 662
TspGWI	ACGGA	3 cut(s)	54, 416, 986
TspRI	CASTG	4 cut(s)	84, 250, 599, 720
VpaK11BI	GGWCC	2 cut(s)	200, 1061
XagI	CCTNNNNNAGG	1 cut(s)	684
XapI	RAATTY	6 cut(s)	164, 380, 470, 512, 746, 936
XbaI	TCTAGA	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	4 cut(s)	51, 323, 776, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.