Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000948

Physical Location & Seq

Genomic Coordinates Reverse (-)

16560053 .. 16561631

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13030.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATGAGCAGATTCATGTGGTGGACTTTGTGATCCTTTGCATCGGGCGATTCAGCGACATTCCAAACATTCCCGAGTTCCCTCCAAACAAGGGACCAGAAGCATTTCATGGAGAGGTTATACACTCCATGAATTATGCCGACATGGATTACGGAAGTGCAGCTAAATTTGTGGAAGGAAAGCAAGTAACTGTTGTGGGATTTCAGAAATTTGCAATGGACATTGCAATGGAGTGCTCAAACGCAAATGGGGTTGAAAATCCGTGCACAGTGTTGTACAAGACAGAACACTGGAATCTTCCTGACTATCTTCCATGGGGCTTTCCCATCGCATACTTATACTTCAATCGCTTCTCGGAGCTCTTGGTACACAAGCCCGGTGAAGGCATCCTGCTCAGTCTCCTTGCAACCATTCTTTCACCTGTGAGATGGGGATTTTCTAAATTTGTCGAAAGCTATATAAATAAGAAGCTTGGTTTAACCAAGTATGGAATGGTACCTAAGCACAGTTTCCTTCAAGAAATCAGTTCTTGTATGATCGCAACAGTACCGGAAAATTTCTTTGATCGAGTCCGAGAGGGAAGCATTATACTGAAAAAGTCTCCCGGCGGCTTTGGCTTTTGCCAAGAAGGGATTCTGGTTAATGGTGAAAGCTCCCCTGTGAAGTCAGATTTGGTCATATTGGCTACTGGGTTTAGGGGTGAGAAAAAGCTCAAGGACATGTTTGTGTCTCCCACCTTTCAGGACTACATCATCGGTTCGCCAAAGTCCATATTACCCCTTTACAGGGAATGCATACACGGAAGAATTCCACAGCTAGCTGTGATTGGATTCTCTGAGAGTATTTCGAACTTATACACCTCCGAGATGAGATGCAGATGGCTAGCGGAGCTTCTCGGAGGCACATTTAAGCTACCAAGCATAAAAGAGATGGAGAAAGATGTGGAAAAATGGGACGCATACGCGAAGCGATATGCTTCCAGCCAATACTACCGGAGATCATGCATCGGTGCCCTTCATCTGTGGTACAATGACCAGTTGTGCAAGGACATGGGATGGAACCCCAAAAGAAAGAAGGGACTCTTTGCTGAATTGTTTGAGCCTTATGGCCCCATGGATTATGCTTCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

378

Amino Acids

42.76

Weight (kDa)

6.72

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16430 FvH4_2g16450
malus_domestica	MD00G1083300.v1.1 MD00G1083500.v1.1 MD05G1133000.v1.1 MD16G1203500.v1.1 MD16G1203700.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1 Prupe.8G177100_v2.0.a1
pyrus_communis	pycom05g13010 pycom05g13030 pycom05g13040
rosa_chinensis	RchiOBHm_Chr6g0280221 RchiOBHm_Chr6g0280281 RchiOBHm_Chr6g0280291 RchiOBHm_Chr6g0280311 RchiOBHm_Chr6g0280341
rosa_laevigata	RLG00000013067 RLG00000013073 RLG00000013075 RLG00000013076
rosa_multiflora	Rmu_sc0000757.1_g000002 Rmu_sc0001572.1_g000020 Rmu_sc0001572.1_g000034 Rmu_sc0002826.1_g000002 Rmu_sc0002858.1_g000010 Rmu_sc0002858.1_g000031 Rmu_sc0004211.1_g000005 Rmu_sc0010624.1_g000006
rosa_roxburghii	Rroxscaffold_7G00188150 Rroxscaffold_7G00188190 Rroxscaffold_7G00188220 Rroxscaffold_7G00188230 Rroxscaffold_7G00188240 Rroxscaffold_7G00188270 Rroxscaffold_7G00188290
rosa_rugosa	Rorug06G0130900 Rorug06G0131200 Rorug06G0131200 Rorug06G0131200 Rorug06G0131500
rosa_samantha	Rh6AG241200 Rh6AG241800 Rh6AG241900 Rh6AG242100 Rh6AG242200 Rh6AG242700 Rh6AG242900 Rh6BG244800 Rh6BG245400 Rh6BG245500 Rh6BG245700 Rh6CG246700 Rh6CG247000 Rh6DG237500 Rh6DG238000 Rh6DG238300 Rh6DG238600
rosa_wichuraiana	Rw5G027390 Rw6G021000 Rw6G021020 Rw6G021040 Rw6G021070 Rw6G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	496
AccB1I	GGYRCC	2 cut(s)	496, 1010
AccII	CGCG	1 cut(s)	965
AciI	CCGC	2 cut(s)	609, 887
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	5 cut(s)	167, 209, 443, 556, 807
AfaI	GTAC	5 cut(s)	278, 369, 498, 549, 1028
AfiI	CCNNNNNNNGG	4 cut(s)	92, 383, 786, 787
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	3 cut(s)	257, 346, 518
AjuI	GAANNNNNNNTTGG	4 cut(s)	618, 650, 656, 688
Alw21I	GWGCWC	3 cut(s)	239, 269, 363
Alw26I	GTCTC	3 cut(s)	404, 606, 735
Alw44I	GTGCAC	1 cut(s)	265
AlwI	GGATC	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	1108
ApaLI	GTGCAC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	5 cut(s)	167, 209, 443, 556, 807
Asp700I	GAANNNNTTC	2 cut(s)	105, 633
Asp718I	GGTACC	1 cut(s)	496
AspS9I	GGNCC	2 cut(s)	95, 1109
AsuC2I	CCSGG	2 cut(s)	378, 606
AsuHPI	GGTGA	4 cut(s)	392, 411, 659, 713
AsuII	TTCGAA	1 cut(s)	848
AsuNHI	GCTAGC	2 cut(s)	817, 883
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	2 cut(s)	269, 1015
BanI	GGYRCC	2 cut(s)	496, 1010
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	3 cut(s)	239, 269, 363
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	5 cut(s)	335, 423, 873, 925, 1050
BcnI	CCSGG	2 cut(s)	378, 606
BcoDI	GTCTC	3 cut(s)	404, 606, 735
BfaI	CTAG	2 cut(s)	818, 884
BisI	GCNGC	2 cut(s)	162, 610
BlsI	GCNGC	2 cut(s)	163, 611
Bme1390I	CCNGG	2 cut(s)	378, 606
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	95, 1109
BmiI	GGNNCC	5 cut(s)	96, 498, 1012, 1061, 1111
BmrFI	CCNGG	2 cut(s)	378, 606
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	4 cut(s)	51, 396, 863, 1014
BmtI	GCTAGC	2 cut(s)	821, 887
BmuI	ACTGGG	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu14I	TTCGAA	1 cut(s)	848
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	2 cut(s)	378, 606
BsaJI	CCNNGG	2 cut(s)	314, 1113
BsaWI	WCCGGW	2 cut(s)	550, 993
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 383, 786, 787
Bse1I	ACTGG	3 cut(s)	296, 694, 1036
Bse3DI	GCAATG	3 cut(s)	222, 222, 234
BseDI	CCNNGG	2 cut(s)	314, 1113
BseGI	GGATG	3 cut(s)	10, 387, 1061
BseLI	CCNNNNNNNGG	4 cut(s)	92, 383, 786, 787
BseMI	GCAATG	3 cut(s)	222, 222, 234
BseMII	CTCAG	2 cut(s)	409, 828
BseNI	ACTGG	3 cut(s)	296, 694, 1036
BseSI	GKGCMC	2 cut(s)	269, 1015
BseXI	GCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	965
BshFI	GGCC	1 cut(s)	1110
BshNI	GGYRCC	2 cut(s)	496, 1010
BsiHKAI	GWGCWC	3 cut(s)	239, 269, 363
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	4 cut(s)	378, 551, 606, 994
BslFI	GGGAC	3 cut(s)	108, 968, 1092
BslI	CCNNNNNNNGG	4 cut(s)	92, 383, 786, 787
BsmAI	GTCTC	3 cut(s)	404, 606, 735
BsmFI	GGGAC	3 cut(s)	108, 968, 1092
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	1 cut(s)	1110
BsoBI	CYCGRG	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	848
Bsp1286I	GDGCHC	4 cut(s)	239, 269, 363, 1015
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	33, 537, 565, 998
Bsp19I	CCATGG	2 cut(s)	314, 1113
BspACI	CCGC	2 cut(s)	609, 887
BspANI	GGCC	1 cut(s)	1110
BspCNI	CTCAG	2 cut(s)	408, 829
BspFNI	CGCG	1 cut(s)	965
BspLI	GGNNCC	5 cut(s)	96, 498, 1012, 1061, 1111
BspOI	GCTAGC	2 cut(s)	821, 887
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	848
BspT107I	GGYRCC	2 cut(s)	496, 1010
BsrDI	GCAATG	3 cut(s)	222, 222, 234
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	296, 694, 1036
BssECI	CCNNGG	2 cut(s)	314, 1113
BssMI	GATC	4 cut(s)	33, 537, 565, 998
BssT1I	CCWWGG	2 cut(s)	314, 1113
Bst4CI	ACNGT	4 cut(s)	193, 271, 509, 547
BstAUI	TGTACA	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	848
BstC8I	GCNNGC	2 cut(s)	819, 885
BstDEI	CTNAG	3 cut(s)	395, 501, 837
BstDSI	CCRYGG	2 cut(s)	314, 1113
BstF5I	GGATG	3 cut(s)	10, 387, 1061
BstFNI	CGCG	1 cut(s)	965
BstKTI	GATC	4 cut(s)	36, 540, 568, 1001
BstMAI	GTCTC	3 cut(s)	404, 606, 735
BstMBI	GATC	4 cut(s)	33, 537, 565, 998
BstMWI	GCNNNNNNNGC	2 cut(s)	615, 889
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	376, 604
BstSLI	GKGCMC	2 cut(s)	269, 1015
BstUI	CGCG	1 cut(s)	965
BstV1I	GCAGC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	1110
BtgI	CCRYGG	2 cut(s)	314, 1113
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	10, 387, 1061
BtsIMutI	CAGTG	2 cut(s)	276, 289
Cac8I	GCNNGC	2 cut(s)	819, 885
Cfr13I	GGNCC	2 cut(s)	95, 1109
CseI	GACGC	1 cut(s)	965
Csp6I	GTAC	5 cut(s)	277, 368, 497, 548, 1027
CviAII	CATG	9 cut(s)	17, 110, 130, 145, 315, 721, 1002, 1051, 1114
CviQI	GTAC	5 cut(s)	277, 368, 497, 548, 1027
DdeI	CTNAG	3 cut(s)	395, 501, 837
DpnI	GATC	4 cut(s)	35, 539, 567, 1000
DpnII	GATC	4 cut(s)	33, 537, 565, 998
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	314, 1113
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	807
EcoT14I	CCWWGG	2 cut(s)	314, 1113
EcoT22I	ATGCAT	2 cut(s)	797, 1007
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	2 cut(s)	314, 1113
FaeI	CATG	9 cut(s)	20, 113, 133, 148, 318, 724, 1005, 1054, 1117
FalI	AAGNNNNNCTT	2 cut(s)	1067, 1099
FaqI	GGGAC	3 cut(s)	108, 968, 1092
FatI	CATG	9 cut(s)	16, 109, 129, 144, 314, 720, 1001, 1050, 1113
Fnu4HI	GCNGC	2 cut(s)	162, 610
FokI	GGATG	3 cut(s)	17, 374, 1068
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	162, 610
FspBI	CTAG	2 cut(s)	818, 884
GluI	GCNGC	2 cut(s)	162, 610
HaeIII	GGCC	1 cut(s)	1110
HapII	CCGG	4 cut(s)	378, 551, 606, 994
HgaI	GACGC	1 cut(s)	965
Hin1II	CATG	9 cut(s)	20, 113, 133, 148, 318, 724, 1005, 1054, 1117
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	7 cut(s)	13, 51, 295, 570, 634, 831, 1080
HpaII	CCGG	4 cut(s)	378, 551, 606, 994
HphI	GGTGA	4 cut(s)	392, 411, 659, 713
Hpy166II	GTNNAC	3 cut(s)	25, 267, 370
Hpy188I	TCNGA	7 cut(s)	207, 358, 575, 670, 838, 865, 899
Hpy188III	TCNNGA	5 cut(s)	74, 302, 518, 743, 1131
Hpy8I	GTNNAC	3 cut(s)	25, 267, 370
HpyAV	CCTTC	6 cut(s)	170, 377, 524, 623, 1025, 1069
HpyCH4III	ACNGT	4 cut(s)	193, 271, 509, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	615, 889
HpyF3I	CTNAG	3 cut(s)	395, 501, 837
Hsp92II	CATG	9 cut(s)	20, 113, 133, 148, 318, 724, 1005, 1054, 1117
KpnI	GGTACC	1 cut(s)	500
Kzo9I	GATC	4 cut(s)	33, 537, 565, 998
LmnI	GCTCC	3 cut(s)	358, 659, 889
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	4 cut(s)	51, 396, 863, 1014
MaeI	CTAG	2 cut(s)	818, 884
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	4 cut(s)	35, 539, 567, 1000
MboI	GATC	4 cut(s)	33, 537, 565, 998
MboII	GAAGA	3 cut(s)	290, 302, 816
MhlI	GDGCHC	4 cut(s)	239, 269, 363, 1015
MluCI	AATT	7 cut(s)	133, 167, 209, 443, 556, 807, 1091
MlyI	GAGTC	2 cut(s)	579, 1074
MnlI	CCTC	5 cut(s)	93, 109, 571, 871, 893
Mph1103I	ATGCAT	2 cut(s)	797, 1007
MroXI	GAANNNNTTC	2 cut(s)	105, 633
MseI	TTAA	3 cut(s)	479, 642, 909
MslI	CAYNNNNRTG	2 cut(s)	227, 725
MspI	CCGG	4 cut(s)	378, 551, 606, 994
MspR9I	CCNGG	2 cut(s)	378, 606
Mva1269I	GAATGC	1 cut(s)	797
MvnI	CGCG	1 cut(s)	965
MwoI	GCNNNNNNNGC	2 cut(s)	615, 889
NciI	CCSGG	2 cut(s)	378, 606
NcoI	CCATGG	2 cut(s)	314, 1113
NdeII	GATC	4 cut(s)	33, 537, 565, 998
NheI	GCTAGC	2 cut(s)	817, 883
NlaIII	CATG	9 cut(s)	20, 113, 133, 148, 318, 724, 1005, 1054, 1117
NlaIV	GGNNCC	5 cut(s)	96, 498, 1012, 1061, 1111
NsiI	ATGCAT	2 cut(s)	797, 1007
NspI	RCATGY	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	848
PciI	ACATGT	1 cut(s)	720
PctI	GAATGC	1 cut(s)	797
PdmI	GAANNNNTTC	2 cut(s)	105, 633
PfeI	GAWTC	5 cut(s)	13, 51, 295, 634, 831
PkrI	GCNGC	2 cut(s)	163, 611
PleI	GAGTC	2 cut(s)	578, 1074
PpsI	GAGTC	2 cut(s)	578, 1074
PscI	ACATGT	1 cut(s)	720
Psp124BI	GAGCTC	1 cut(s)	363
PspN4I	GGNNCC	5 cut(s)	96, 498, 1012, 1061, 1111
PspPI	GGNCC	2 cut(s)	95, 1109
RsaI	GTAC	5 cut(s)	278, 369, 498, 549, 1028
RsaNI	GTAC	5 cut(s)	277, 368, 497, 548, 1027
RseI	CAYNNNNRTG	2 cut(s)	227, 725
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	479, 642, 909
SatI	GCNGC	2 cut(s)	162, 610
Sau3AI	GATC	4 cut(s)	33, 537, 565, 998
Sau96I	GGNCC	2 cut(s)	95, 1109
SchI	GAGTC	2 cut(s)	579, 1074
ScrFI	CCNGG	2 cut(s)	378, 606
SduI	GDGCHC	4 cut(s)	239, 269, 363, 1015
SfaNI	GCATC	4 cut(s)	51, 396, 863, 1014
SfuI	TTCGAA	1 cut(s)	848
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	2 cut(s)	227, 725
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	7 cut(s)	133, 167, 209, 443, 556, 807, 1091
SsiI	CCGC	2 cut(s)	609, 887
SspMI	CTAG	2 cut(s)	818, 884
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	376, 604
StyI	CCWWGG	2 cut(s)	314, 1113
TaaI	ACNGT	4 cut(s)	193, 271, 509, 547
TaqI	TCGA	3 cut(s)	450, 568, 848
TasI	AATT	7 cut(s)	133, 167, 209, 443, 556, 807, 1091
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	5 cut(s)	13, 51, 295, 634, 831
Tru1I	TTAA	3 cut(s)	479, 642, 909
Tru9I	TTAA	3 cut(s)	479, 642, 909
TscAI	CASTG	2 cut(s)	276, 296
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	4 cut(s)	5, 98, 146, 1007
TspGWI	ACGGA	3 cut(s)	168, 252, 816
TspRI	CASTG	2 cut(s)	276, 296
VneI	GTGCAC	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	5 cut(s)	167, 209, 443, 556, 807
XceI	RCATGY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmnI	GAANNNNTTC	2 cut(s)	105, 633
XspI	CTAG	2 cut(s)	818, 884
Zsp2I	ATGCAT	2 cut(s)	797, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.