Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002898

Physical Location & Seq

Genomic Coordinates Reverse (-)

15566203 .. 15569154

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1159900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAAGATGCAGGGCTACAATGGAAGTCAAGCATGGGATACTTCTTTTGCCATTCAAGCGATCATATCAACTGACCTTGTTGAAGAGTATGGACCAATTTTAAGAAAAGAGCATCAGTATATCAAAGATTCCCAGGTAATCTCAACAGCTGATCATGGATGGCCTATCTCTGACTGCACAGCAGAAGGGCTGAAGGCTGCTTTATTACTATATAAACTTCCAGCAGAAACAGTTGGGGACTCATTAGATATAAAGCGCTTTTATGATGCTAATGACAATGGTGGTTTTGCGACTTATGAACTAACTAGATCATACCAGTGGTTCGAGGTAAGTATCATTTATATGCTGCCTAGCCTGCTCATATATGTTGAATGCACCTCAGCGGCAATTCAAGCATTTGCATTGTTCAAAAAATTATGTCCAGGGCATAGGAGTGAAGAAATAGAAAACTGTATTGCTCGTGCTGCAAAGTTCATTGAAACGGTACAAGCAACAGATGGATCTTGGTATGGTTCCTGGGGAGTATGCTTCACCTATGCTGGGTGGTTTGGAATGAAGGGTTTGGTTGCTGCGGGAAGGACATACGAAGACTGCTCTAGCATTTGTAAAGCATGCGACTTTTTGTTATCCAAAGAGCTTCCTTCAGGTGGATGGGGAGAAAGCTATCTATCATGTCAGAACAAGGCTAAGAGAGACCCAACTCCGTTGCATCGGGCAGCTAGGGTACTAATCAATTCTCAAATGGAAAATGGAGATTTCCCTCAAAAGGAGATCACTGGTGTCTTCAGCAAGAACCGTATGATCAGCTATTCAGCCTACCGAAACATTTTTCCCGTCTGGGCCCTCGGAGAATATCGTTGCAAGGTATTGGACGCCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

294

Amino Acids

32.81

Weight (kDa)

5.67

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_C	PF13243	92 - 230	7.7e-16	Squalene-hopene cyclase C-terminal domain
SQHop_cyclase_C	PF13243	236 - 286	2.5e-06	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07050 AT2G07050
fragaria_vesca	FvH4_4g05990 FvH4_4g05990 FvH4_4g05990 FvH4_4g05990 FvH4_6g36510 FvH4_6g36510
malus_domestica	MD00G1130000.v1.1 MD00G1220900.v1.1 MD13G1232100.v1.1 MD16G1237000.v1.1 MD17G1159900.v1.1 MD17G1245900.v1.1 MD17G1246400.v1.1
prunus_persica	Prupe.1G063400_v2.0.a1 Prupe.3G026100_v2.0.a1 Prupe.3G026100_v2.0.a1
pyrus_communis	pycom09g08550
rosa_chinensis	RchiOBHm_Chr2g0148711 RchiOBHm_Chr2g0148821 RchiOBHm_Chr2g0148951 RchiOBHm_Chr4g0397221
rosa_laevigata	RLG00000009438 RLG00000020359
rosa_multiflora	Rmu_sc0001796.1_g000004 Rmu_sc0002312.1_g000065 Rmu_sc0008532.1_g000008 Rmu_sc0017689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098550 Rroxscaffold_5G00342160
rosa_rugosa	Rorug03G0225900 Rorug03G0343900 Rorug03G0343900
rosa_samantha	Rh2AG467200 Rh2DG488900
rosa_wichuraiana	Rw2G038090 Rw4G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	383, 572
AclWI	GGATC	1 cut(s)	508
AcuI	CTGAAG	3 cut(s)	212, 627, 769
AcyI	GRCGYC	1 cut(s)	873
AfaI	GTAC	2 cut(s)	486, 726
AfeI	AGCGCT	1 cut(s)	257
AfiI	CCNNNNNNNGG	3 cut(s)	540, 647, 766
AgsI	TTSAA	6 cut(s)	56, 83, 371, 392, 409, 479
AjnI	CCWGG	3 cut(s)	132, 421, 515
AluBI	AGCT	5 cut(s)	149, 637, 663, 719, 807
AluI	AGCT	5 cut(s)	149, 637, 663, 719, 807
Alw26I	GTCTC	1 cut(s)	687
AlwI	GGATC	1 cut(s)	508
Aor51HI	AGCGCT	1 cut(s)	257
AoxI	GGCC	2 cut(s)	161, 840
ApaI	GGGCCC	1 cut(s)	844
ApeKI	GCWGC	5 cut(s)	197, 346, 464, 569, 716
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	3 cut(s)	92, 840, 841
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	844
BanII	GRGCYC	1 cut(s)	844
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	594, 775
BbvCI	CCTCAGC	1 cut(s)	379
BbvI	GCAGC	5 cut(s)	184, 333, 451, 556, 728
BccI	CCATC	3 cut(s)	153, 491, 645
BciT130I	CCWGG	3 cut(s)	134, 423, 517
BciVI	GTATCC	1 cut(s)	31
BclI	TGATCA	2 cut(s)	151, 801
BcoDI	GTCTC	1 cut(s)	687
BfaI	CTAG	4 cut(s)	306, 351, 597, 720
BfoI	RGCGCY	1 cut(s)	259
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	6 cut(s)	198, 347, 384, 465, 570, 717
BlsI	GCNGC	6 cut(s)	199, 348, 385, 466, 571, 718
Bme1390I	CCNGG	3 cut(s)	134, 423, 517
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	3 cut(s)	92, 840, 841
BmiI	GGNNCC	2 cut(s)	514, 842
BmrFI	CCNGG	3 cut(s)	134, 423, 517
BmsI	GCATC	3 cut(s)	121, 256, 718
BpiI	GAAGAC	2 cut(s)	594, 775
Bpu10I	CCTNAGC	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	873
BsaI	GGTCTC	1 cut(s)	687
BsaJI	CCNNGG	4 cut(s)	132, 422, 516, 844
Bsc4I	CCNNNNNNNGG	3 cut(s)	540, 647, 766
Bse1I	ACTGG	2 cut(s)	316, 781
BseBI	CCWGG	3 cut(s)	134, 423, 517
BseDI	CCNNGG	4 cut(s)	132, 422, 516, 844
BseGI	GGATG	2 cut(s)	164, 656
BseLI	CCNNNNNNNGG	3 cut(s)	540, 647, 766
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	316, 781
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	5 cut(s)	184, 333, 451, 556, 728
BseYI	CCCAGC	1 cut(s)	539
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	163, 842
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	3 cut(s)	540, 647, 766
BsmAI	GTCTC	1 cut(s)	687
BsmFI	GGGAC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	163, 842
Bso31I	GGTCTC	1 cut(s)	687
Bsp120I	GGGCCC	1 cut(s)	840
Bsp1286I	GDGCHC	1 cut(s)	844
Bsp143I	GATC	6 cut(s)	60, 151, 308, 500, 771, 801
BspACI	CCGC	2 cut(s)	383, 572
BspANI	GGCC	2 cut(s)	163, 842
BspCNI	CTCAG	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	514, 842
BspPI	GGATC	1 cut(s)	508
BspTNI	GGTCTC	1 cut(s)	687
BsrI	ACTGG	2 cut(s)	316, 781
BssECI	CCNNGG	4 cut(s)	132, 422, 516, 844
BssMI	GATC	6 cut(s)	60, 151, 308, 500, 771, 801
BssNI	GRCGYC	1 cut(s)	873
BssSI	CACGAG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	3 cut(s)	134, 423, 517
Bst4CI	ACNGT	4 cut(s)	232, 452, 484, 797
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	873
BstC8I	GCNNGC	2 cut(s)	356, 613
BstDEI	CTNAG	2 cut(s)	379, 687
BstF5I	GGATG	2 cut(s)	164, 656
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	6 cut(s)	63, 154, 311, 503, 774, 804
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	6 cut(s)	60, 151, 308, 500, 771, 801
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 355, 392, 464
BstNI	CCWGG	3 cut(s)	134, 423, 517
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	3 cut(s)	132, 421, 515
BstSLI	GKGCMC	1 cut(s)	844
BstV1I	GCAGC	5 cut(s)	184, 333, 451, 556, 728
BstV2I	GAAGAC	2 cut(s)	594, 775
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	163, 842
BtsCI	GGATG	2 cut(s)	164, 656
BtsIMutI	CAGTG	2 cut(s)	323, 774
Cac8I	GCNNGC	2 cut(s)	356, 613
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	3 cut(s)	92, 840, 841
Csp6I	GTAC	2 cut(s)	485, 725
CviAII	CATG	4 cut(s)	33, 155, 612, 672
CviQI	GTAC	2 cut(s)	485, 725
DdeI	CTNAG	2 cut(s)	379, 687
DpnI	GATC	6 cut(s)	62, 153, 310, 502, 773, 803
DpnII	GATC	6 cut(s)	60, 151, 308, 500, 771, 801
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	844
Eco31I	GGTCTC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	92
Eco47III	AGCGCT	1 cut(s)	257
Eco57I	CTGAAG	3 cut(s)	212, 627, 769
EcoO109I	RGGNCCY	1 cut(s)	841
EcoRII	CCWGG	3 cut(s)	132, 421, 515
EcoT38I	GRGCYC	1 cut(s)	844
FaeI	CATG	4 cut(s)	36, 158, 615, 675
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	4 cut(s)	32, 154, 611, 671
FauI	CCCGC	1 cut(s)	565
FbaI	TGATCA	2 cut(s)	151, 801
Fnu4HI	GCNGC	6 cut(s)	198, 347, 384, 465, 570, 717
FokI	GGATG	2 cut(s)	171, 663
FriOI	GRGCYC	1 cut(s)	844
Fsp4HI	GCNGC	6 cut(s)	198, 347, 384, 465, 570, 717
FspBI	CTAG	4 cut(s)	306, 351, 597, 720
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	6 cut(s)	198, 347, 384, 465, 570, 717
GsaI	CCCAGC	1 cut(s)	543
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	2 cut(s)	163, 842
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	873
Hin1II	CATG	4 cut(s)	36, 158, 615, 675
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	128, 239
HphI	GGTGA	1 cut(s)	523
Hpy188I	TCNGA	3 cut(s)	172, 678, 848
HpyAV	CCTTC	5 cut(s)	179, 187, 550, 570, 651
HpyCH4III	ACNGT	4 cut(s)	232, 452, 484, 797
HpyCH4V	TGCA	7 cut(s)	10, 177, 375, 401, 467, 709, 861
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 355, 392, 464
HpyF3I	CTNAG	2 cut(s)	379, 687
Hsp92I	GRCGYC	1 cut(s)	873
Hsp92II	CATG	4 cut(s)	36, 158, 615, 675
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	2 cut(s)	151, 801
Kzo9I	GATC	6 cut(s)	60, 151, 308, 500, 771, 801
Lsp1109I	GCAGC	5 cut(s)	184, 333, 451, 556, 728
LweI	GCATC	3 cut(s)	121, 256, 718
MaeI	CTAG	4 cut(s)	306, 351, 597, 720
MalI	GATC	6 cut(s)	62, 153, 310, 502, 773, 803
MboI	GATC	6 cut(s)	60, 151, 308, 500, 771, 801
MboII	GAAGA	5 cut(s)	16, 95, 449, 599, 775
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	1 cut(s)	844
MluCI	AATT	4 cut(s)	96, 387, 413, 733
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	4 cut(s)	319, 388, 771, 854
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	3 cut(s)	316, 341, 432
MspA1I	CMGCKG	2 cut(s)	149, 383
MspR9I	CCNGG	3 cut(s)	134, 423, 517
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	3 cut(s)	134, 423, 517
MwoI	GCNNNNNNNGC	4 cut(s)	56, 355, 392, 464
NdeII	GATC	6 cut(s)	60, 151, 308, 500, 771, 801
NlaIII	CATG	4 cut(s)	36, 158, 615, 675
NlaIV	GGNNCC	2 cut(s)	514, 842
NspI	RCATGY	1 cut(s)	615
PaeI	GCATGC	1 cut(s)	615
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	6 cut(s)	199, 348, 385, 466, 571, 718
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp6I	CCWGG	3 cut(s)	132, 421, 515
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	3 cut(s)	132, 421, 515
PspN4I	GGNNCC	2 cut(s)	514, 842
PspOMI	GGGCCC	1 cut(s)	840
PspPI	GGNCC	3 cut(s)	92, 840, 841
PsuI	RGATCY	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	486, 726
RsaNI	GTAC	2 cut(s)	485, 725
RseI	CAYNNNNRTG	3 cut(s)	316, 341, 432
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	6 cut(s)	198, 347, 384, 465, 570, 717
Sau3AI	GATC	6 cut(s)	60, 151, 308, 500, 771, 801
Sau96I	GGNCC	3 cut(s)	92, 840, 841
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	3 cut(s)	134, 423, 517
SduI	GDGCHC	1 cut(s)	844
SfaNI	GCATC	3 cut(s)	121, 256, 718
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	3 cut(s)	316, 341, 432
SphI	GCATGC	1 cut(s)	615
Sse9I	AATT	4 cut(s)	96, 387, 413, 733
SsiI	CCGC	2 cut(s)	383, 572
SspMI	CTAG	4 cut(s)	306, 351, 597, 720
StyD4I	CCNGG	3 cut(s)	132, 421, 515
TaaI	ACNGT	4 cut(s)	232, 452, 484, 797
TaqI	TCGA	1 cut(s)	324
TasI	AATT	4 cut(s)	96, 387, 413, 733
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	323, 781
TseI	GCWGC	5 cut(s)	197, 346, 464, 569, 716
TspDTI	ATGAA	4 cut(s)	17, 312, 463, 569
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	2 cut(s)	323, 781
VpaK11BI	GGWCC	1 cut(s)	92
XceI	RCATGY	1 cut(s)	615
XspI	CTAG	4 cut(s)	306, 351, 597, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.